Wall clock time and date at job start Tue Mar 31 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.28955 * 2 1 4 4 C 1.54260 * 110.32807 * 122.12756 * 2 1 3 5 5 C 1.54381 * 105.06213 * 118.89636 * 4 2 1 6 6 N 1.48553 * 104.59389 * 23.85245 * 5 4 2 7 7 C 1.46904 * 111.00004 * 200.95997 * 6 5 4 8 8 C 1.50699 * 109.47227 * 290.12717 * 7 6 5 9 9 O 1.21284 * 119.99649 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00402 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00132 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47054 * 179.97438 * 11 10 8 13 13 C 1.30998 * 120.00259 * 124.99485 * 12 11 10 14 14 C 1.50700 * 120.00259 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47309 * 125.00264 * 14 13 12 16 16 C 1.36926 * 120.00371 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.38818 * 120.00352 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99435 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99973 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47477 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47192 * 120.00364 * 20 18 16 23 23 H 1.48500 * 109.47071 * 239.99514 * 20 18 16 24 24 C 1.48558 * 104.22588 * 320.52051 * 6 5 4 25 25 H 1.09002 * 109.47153 * 299.32544 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.32735 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.32716 * 1 2 3 28 28 H 1.09002 * 110.32312 * 237.79553 * 4 2 1 29 29 H 1.09002 * 110.32032 * 359.97438 * 4 2 1 30 30 H 1.08996 * 110.41313 * 142.63749 * 5 4 2 31 31 H 1.09001 * 110.40788 * 265.07948 * 5 4 2 32 32 H 1.08997 * 109.46872 * 50.12757 * 7 6 5 33 33 H 1.09009 * 109.46828 * 170.12928 * 7 6 5 34 34 H 0.97001 * 119.99304 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47116 * 299.99418 * 11 10 8 36 36 H 1.08991 * 109.47306 * 60.00083 * 11 10 8 37 37 H 1.08001 * 120.00307 * 305.00379 * 12 11 10 38 38 H 1.07999 * 119.99925 * 0.02562 * 13 12 11 39 39 H 1.09001 * 109.47308 * 245.00278 * 14 13 12 40 40 H 1.08999 * 109.46953 * 5.00208 * 14 13 12 41 41 H 0.97007 * 119.99332 * 0.02562 * 15 14 13 42 42 H 0.97003 * 119.99779 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.40899 * 280.70312 * 24 6 5 44 44 H 1.09006 * 110.41652 * 158.26330 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0659 -0.7693 1.2250 5 6 2.8807 -1.9415 0.6376 6 7 3.2693 -1.4835 -0.7211 7 6 3.6068 -2.6232 -1.5844 8 6 4.9012 -3.2394 -1.1197 9 8 5.4848 -2.7752 -0.1632 10 7 5.4103 -4.3063 -1.7670 11 6 6.6682 -4.9057 -1.3149 12 6 7.0145 -6.0747 -2.2005 13 6 8.1778 -6.1194 -2.8013 14 6 8.5238 -7.2882 -3.6875 15 7 8.9048 -6.7988 -5.0147 16 6 9.2631 -7.6856 -5.9946 17 1 9.2645 -8.7459 -5.7892 18 6 9.6246 -7.2218 -7.2521 19 7 9.6234 -5.9297 -7.5023 20 14 10.1128 -8.4317 -8.5889 21 1 10.0318 -9.8159 -8.0575 22 1 9.1909 -8.2909 -9.7447 23 1 11.5032 -8.1499 -9.0279 24 6 2.0662 -0.7722 -1.2245 25 1 -0.3633 0.5033 0.8960 26 1 -0.3633 -1.0276 -0.0121 27 1 -0.3634 0.5243 -0.8839 28 1 2.7082 -0.1250 1.8254 29 1 1.2388 -1.1465 1.8266 30 1 3.7671 -2.1296 1.2434 31 1 2.2648 -2.8387 0.5746 32 1 2.8113 -3.3664 -1.5324 33 1 3.7166 -2.2797 -2.6131 34 1 4.9432 -4.6778 -2.5317 35 1 7.4639 -4.1624 -1.3661 36 1 6.5579 -5.2496 -0.2865 37 1 6.3036 -6.8757 -2.3401 38 1 8.8888 -5.3186 -2.6616 39 1 9.3560 -7.8409 -3.2514 40 1 7.6585 -7.9450 -3.7769 41 1 8.9039 -5.8464 -5.1991 42 1 9.8756 -5.6056 -8.3811 43 1 1.3229 -1.4863 -1.5789 44 1 2.3393 -0.0797 -2.0209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497675218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:14 Heat of formation + Delta-G solvation = -31.714648 kcal Electronic energy + Delta-G solvation = -20990.637294 eV Core-core repulsion = 17749.313497 eV Total energy + Delta-G solvation = -3241.323798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02344 -39.53109 -37.65267 -36.19728 -34.48384 -34.27940 -32.44625 -30.70785 -29.38113 -27.95567 -26.15925 -25.29776 -23.60107 -22.40081 -21.60839 -21.02833 -20.52686 -19.12130 -18.06031 -17.38530 -17.07408 -16.71059 -16.49844 -16.05094 -15.58246 -15.44919 -15.16701 -14.97711 -14.77734 -14.30800 -14.11335 -13.85380 -13.50595 -13.36369 -13.23803 -13.13350 -12.91302 -12.77774 -12.72291 -12.34844 -12.15285 -11.99492 -11.79126 -11.77303 -11.59951 -11.40050 -11.08605 -10.91531 -10.32869 -9.96959 -9.44622 -9.02336 -7.97010 -5.26977 1.05058 1.48049 1.48931 1.59281 1.64421 2.25847 2.56411 3.09579 3.36926 3.65672 3.68587 3.73942 3.95168 4.02188 4.08849 4.22701 4.27501 4.28787 4.37244 4.47326 4.53395 4.64410 4.67063 4.69466 4.73176 4.79761 4.87358 4.92080 4.99796 5.00110 5.14815 5.23234 5.30381 5.38343 5.42167 5.47223 5.65787 5.83109 5.86125 5.92039 6.25247 6.58402 7.27029 7.31145 8.05267 8.29185 9.26714 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031030 B = 0.002229 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.150212 B =12561.213469 C =13174.393157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.076 0.924 4 C -0.118 4.118 5 C 0.034 3.966 6 N -0.519 5.519 7 C 0.029 3.971 8 C 0.509 3.491 9 O -0.569 6.569 10 N -0.719 5.719 11 C 0.160 3.840 12 C -0.160 4.160 13 C -0.133 4.133 14 C 0.173 3.827 15 N -0.745 5.745 16 C -0.248 4.248 17 H 0.079 0.921 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.294 1.294 24 C 0.036 3.964 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.414 0.586 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.060 0.940 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.862 8.347 16.192 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.094 4.094 6 N -0.244 5.244 7 C -0.103 4.103 8 C 0.296 3.704 9 O -0.448 6.448 10 N -0.372 5.372 11 C 0.036 3.964 12 C -0.179 4.179 13 C -0.153 4.153 14 C 0.048 3.952 15 N -0.387 5.387 16 C -0.379 4.379 17 H 0.097 0.903 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.218 1.218 23 H -0.221 1.221 24 C -0.092 4.092 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.251 0.749 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.932 8.818 16.832 27.538 hybrid contribution -0.012 -0.880 -1.301 1.571 sum -19.944 7.938 15.531 26.495 Atomic orbital electron populations 1.21827 0.93114 1.02150 1.02554 1.21879 0.96553 0.99493 0.93593 0.90539 1.22395 0.99231 0.96347 0.97663 1.23123 0.98535 0.97136 0.90591 1.65113 1.34708 1.22169 1.02396 1.22194 0.94210 0.94172 0.99685 1.21029 0.87348 0.79462 0.82530 1.90673 1.62493 1.62371 1.29244 1.45955 1.24922 1.31751 1.34562 1.20166 0.85942 0.92803 0.97452 1.22774 0.97305 0.98846 0.98954 1.23006 0.97957 0.98553 0.95746 1.19912 0.97321 0.93815 0.84175 1.42545 1.81517 1.06218 1.08444 1.19718 1.36269 0.90452 0.91498 0.90308 1.25644 1.03341 0.97745 1.00280 1.69836 1.56379 1.13490 1.22350 0.85016 0.76920 0.78571 0.78887 1.18856 1.21849 1.22088 1.23306 0.90261 0.97547 0.98048 0.91802 0.92449 0.91825 0.91799 0.89807 0.91691 0.93474 0.89212 0.86090 0.74913 0.92655 0.90503 0.85053 0.87647 0.95226 0.94763 0.79432 0.93931 0.92185 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.91 71.98 0.64 -0.59 16 2 C -0.10 -1.23 3.65 -9.90 -0.04 -1.27 16 3 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 4 C -0.12 -1.76 6.65 31.49 0.21 -1.55 16 5 C 0.03 0.65 5.80 86.45 0.50 1.15 16 6 N -0.52 -10.40 5.06 -886.05 -4.49 -14.88 16 7 C 0.03 0.50 5.30 85.56 0.45 0.95 16 8 C 0.51 12.40 7.63 87.66 0.67 13.07 16 9 O -0.57 -18.76 14.84 -3.04 -0.05 -18.80 16 10 N -0.72 -15.39 5.55 -466.81 -2.59 -17.98 16 11 C 0.16 3.87 6.11 85.63 0.52 4.39 16 12 C -0.16 -4.01 9.24 25.65 0.24 -3.78 16 13 C -0.13 -4.23 9.24 25.65 0.24 -3.99 16 14 C 0.17 6.81 6.70 85.63 0.57 7.38 16 15 N -0.74 -38.05 5.59 -347.18 -1.94 -40.00 16 16 C -0.25 -13.84 9.99 84.04 0.84 -13.00 16 17 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 19 N -0.97 -59.57 13.06 21.65 0.28 -59.28 16 20 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 C 0.04 0.51 6.03 86.45 0.52 1.03 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.49 8.12 -2.39 -0.02 0.47 16 27 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.97 7.71 -2.39 -0.02 0.95 16 30 H 0.06 1.63 6.91 -2.39 -0.02 1.62 16 31 H 0.05 0.79 7.82 -2.39 -0.02 0.77 16 32 H 0.09 1.12 7.88 -2.39 -0.02 1.10 16 33 H 0.12 1.74 8.13 -2.38 -0.02 1.72 16 34 H 0.41 6.88 8.46 -92.71 -0.78 6.10 16 35 H 0.06 1.53 7.79 -2.39 -0.02 1.52 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.13 2.91 7.84 -2.91 -0.02 2.89 16 38 H 0.11 3.42 7.84 -2.91 -0.02 3.40 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.03 1.29 7.79 -2.39 -0.02 1.27 16 41 H 0.37 20.43 7.66 -92.70 -0.71 19.72 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.06 0.68 7.70 -2.39 -0.02 0.67 16 44 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -71.09 360.52 -1.43 -72.53 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.52 Total: 30.75 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.84 Total: -0.22 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -8.73 Total: -132.14 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -71.09 -1.43 -72.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.811 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds