Wall clock time and date at job start Tue Mar 31 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.87423 * 2 1 4 4 C 1.55136 * 110.99168 * 236.16025 * 2 1 3 5 5 C 1.54321 * 103.02220 * 206.25261 * 4 2 1 6 6 N 1.47441 * 107.23085 * 22.28334 * 5 4 2 7 7 C 1.46893 * 111.00254 * 123.25853 * 6 5 4 8 8 C 1.50705 * 109.47448 * 69.87324 * 7 6 5 9 9 O 1.21285 * 119.99408 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00442 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00015 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46915 * 179.97438 * 11 10 8 13 13 C 1.31005 * 119.99776 * 125.00274 * 12 11 10 14 14 C 1.50702 * 119.99932 * 180.27660 * 13 12 11 15 15 N 1.46500 * 109.47089 * 124.72256 * 14 13 12 16 16 C 1.36938 * 119.99971 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99921 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00313 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99846 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47084 * 89.99934 * 20 18 16 22 22 H 1.48502 * 109.47397 * 210.00339 * 20 18 16 23 23 H 1.48507 * 109.47187 * 330.00315 * 20 18 16 24 24 C 1.47846 * 108.56760 * 0.98778 * 6 5 4 25 25 H 1.09004 * 109.46722 * 182.39139 * 1 2 3 26 26 H 1.09004 * 109.46660 * 302.38341 * 1 2 3 27 27 H 1.08996 * 109.47284 * 62.38575 * 1 2 3 28 28 H 1.08999 * 110.70995 * 87.86958 * 4 2 1 29 29 H 1.09005 * 110.85208 * 324.70620 * 4 2 1 30 30 H 1.08996 * 109.88835 * 262.88020 * 5 4 2 31 31 H 1.08997 * 109.88884 * 141.68853 * 5 4 2 32 32 H 1.08994 * 109.47372 * 309.87122 * 7 6 5 33 33 H 1.09004 * 109.47617 * 189.87101 * 7 6 5 34 34 H 0.97006 * 119.99902 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47251 * 59.99732 * 11 10 8 36 36 H 1.08994 * 109.46778 * 299.99704 * 11 10 8 37 37 H 1.08002 * 120.00511 * 305.00212 * 12 11 10 38 38 H 1.08002 * 119.99708 * 359.97438 * 13 12 11 39 39 H 1.09002 * 109.47005 * 244.72313 * 14 13 12 40 40 H 1.08999 * 109.47073 * 4.72010 * 14 13 12 41 41 H 0.96998 * 119.99957 * 359.97438 * 15 14 13 42 42 H 0.96993 * 120.00156 * 179.97438 * 19 18 16 43 43 H 1.09001 * 110.37157 * 94.73630 * 24 6 5 44 44 H 1.08997 * 110.37652 * 217.07706 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0857 -0.8066 -1.2030 5 6 3.4693 -1.2708 -0.7011 6 7 3.4314 -1.2423 0.7725 7 6 3.7613 -2.5593 1.3332 8 6 5.2208 -2.8534 1.0999 9 8 5.9174 -2.0455 0.5229 10 7 5.7517 -4.0145 1.5315 11 6 7.1704 -4.3005 1.3042 12 6 7.5089 -5.6517 1.8795 13 6 8.0622 -6.5661 1.1220 14 6 8.3950 -7.9194 1.6957 15 7 7.7573 -8.9623 0.8883 16 6 7.9199 -10.2808 1.2205 17 1 8.5180 -10.5517 2.0780 18 6 7.3152 -11.2689 0.4558 19 7 6.5851 -10.9386 -0.5883 20 14 7.5377 -13.0674 0.9086 21 1 6.4602 -13.4794 1.8437 22 1 7.4717 -13.8991 -0.3200 23 1 8.8582 -13.2537 1.5621 24 6 2.0850 -0.8064 1.2005 25 1 -0.3633 -1.0268 0.0429 26 1 -0.3633 0.5504 0.8679 27 1 -0.3633 0.4763 -0.9106 28 1 2.1884 -0.1683 -2.0806 29 1 1.4485 -1.6630 -1.4236 30 1 4.2421 -0.5939 -1.0653 31 1 3.6682 -2.2849 -1.0474 32 1 3.1545 -3.3234 0.8473 33 1 3.5572 -2.5600 2.4040 34 1 5.1944 -4.6609 1.9927 35 1 7.7775 -3.5367 1.7901 36 1 7.3741 -4.2998 0.2335 37 1 7.2954 -5.8661 2.9163 38 1 8.2754 -6.3518 0.0852 39 1 9.4755 -8.0623 1.6861 40 1 8.0296 -7.9792 2.7209 41 1 7.2198 -8.7189 0.1184 42 1 6.1629 -11.6291 -1.1228 43 1 1.4524 -1.6710 1.4018 44 1 2.1545 -0.1720 2.0841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497675219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:17 Heat of formation + Delta-G solvation = -8.182043 kcal Electronic energy + Delta-G solvation = -21047.001694 eV Core-core repulsion = 17806.698346 eV Total energy + Delta-G solvation = -3240.303348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14089 -38.71399 -36.25029 -34.67607 -33.62374 -32.80983 -30.70772 -30.04805 -28.36443 -26.80069 -25.16195 -23.90121 -22.00900 -21.37808 -20.77076 -20.36145 -19.33595 -17.16943 -16.96754 -16.70972 -16.37738 -15.44763 -15.14242 -14.77097 -14.30969 -14.15271 -13.91419 -13.61391 -13.42634 -13.35027 -13.25501 -12.90135 -12.79196 -12.49770 -12.22161 -11.96704 -11.83807 -11.46076 -11.27226 -11.05192 -11.02121 -10.90670 -10.84984 -10.63472 -10.10508 -9.91215 -9.81995 -9.23554 -8.98797 -8.71703 -8.55093 -6.97510 -5.80613 -3.10229 2.26266 2.64385 3.19304 3.41065 3.46210 3.48113 3.82294 4.23923 4.34208 4.56470 4.57104 4.73405 4.95421 4.98950 5.00263 5.05148 5.08880 5.15825 5.26015 5.29954 5.40124 5.41681 5.52630 5.59181 5.63400 5.69875 5.76334 5.80781 5.88418 5.99086 6.04879 6.11752 6.36934 6.46122 6.55807 6.67047 6.68341 6.89652 7.13618 7.52152 7.65788 8.24472 8.37785 9.49051 10.05356 10.40634 11.42159 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.002380 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.038197 B =11760.197324 C =12530.335580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.513 5.513 7 C 0.030 3.970 8 C 0.511 3.489 9 O -0.526 6.526 10 N -0.727 5.727 11 C 0.157 3.843 12 C -0.201 4.201 13 C -0.108 4.108 14 C 0.172 3.828 15 N -0.730 5.730 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.046 3.954 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.049 0.951 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 21.895 3.469 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.180 4.180 5 C -0.077 4.077 6 N -0.237 5.237 7 C -0.101 4.101 8 C 0.296 3.704 9 O -0.401 6.401 10 N -0.380 5.380 11 C 0.035 3.965 12 C -0.220 4.220 13 C -0.127 4.127 14 C 0.045 3.955 15 N -0.374 5.374 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.082 4.082 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.817 22.672 3.310 24.927 hybrid contribution -0.893 -1.988 -0.083 2.181 sum -10.711 20.684 3.228 23.515 Atomic orbital electron populations 1.21722 0.94317 1.01954 1.01965 1.22282 0.95564 0.99831 0.94407 0.89686 1.22923 0.96711 0.99988 0.98371 1.22791 0.96921 1.01301 0.86668 1.63283 1.27043 1.24591 1.08781 1.22179 0.93808 0.91871 1.02268 1.20482 0.89717 0.81310 0.78885 1.90697 1.62123 1.46513 1.40776 1.46054 1.11621 1.19865 1.60473 1.20276 0.80952 0.94877 1.00438 1.22703 1.04310 0.94674 1.00336 1.23334 0.95090 0.95007 0.99267 1.19826 0.96309 0.85146 0.94180 1.42299 1.60315 1.01425 1.33366 1.19249 1.25829 0.82736 1.09491 0.91050 1.24770 1.00278 0.98136 0.97824 1.69663 1.37198 1.32208 1.19074 0.86156 0.77698 0.84948 0.77178 1.21665 1.21707 1.20690 1.23152 0.88062 0.98508 0.98449 0.92613 0.92385 0.92333 0.90673 0.91437 0.89806 0.92878 0.91601 0.87935 0.76378 0.91170 0.91367 0.86773 0.87301 0.95135 0.95671 0.78158 0.93444 0.93307 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.30 37.16 0.35 -0.45 16 2 C -0.10 -0.73 3.63 -88.49 -0.32 -1.05 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.14 -1.12 6.41 -24.91 -0.16 -1.28 16 5 C 0.05 0.53 5.65 -2.84 -0.02 0.52 16 6 N -0.51 -5.39 4.85 -232.70 -1.13 -6.52 16 7 C 0.03 0.29 5.03 -4.98 -0.03 0.27 16 8 C 0.51 6.51 7.48 -10.99 -0.08 6.43 16 9 O -0.53 -8.69 15.54 5.55 0.09 -8.60 16 10 N -0.73 -8.44 5.55 -61.47 -0.34 -8.78 16 11 C 0.16 2.02 6.11 -5.19 -0.03 1.99 16 12 C -0.20 -2.73 9.24 -36.03 -0.33 -3.06 16 13 C -0.11 -1.75 9.24 -36.03 -0.33 -2.08 16 14 C 0.17 3.44 6.70 -5.19 -0.03 3.41 16 15 N -0.73 -18.58 5.59 -61.09 -0.34 -18.93 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.05 0.36 6.15 -2.30 -0.01 0.35 16 25 H 0.05 0.32 8.10 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.51 8.04 -51.93 -0.42 0.10 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.60 7.31 -51.93 -0.38 0.22 16 32 H 0.07 0.56 7.96 -51.93 -0.41 0.15 16 33 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.40 3.86 8.46 -40.82 -0.35 3.51 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 37 H 0.11 1.46 7.84 -52.49 -0.41 1.05 16 38 H 0.11 1.75 7.84 -52.49 -0.41 1.33 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 41 H 0.38 10.31 7.66 -40.82 -0.31 10.00 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -32.89 361.72 -9.49 -42.38 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.67 Total: 7.64 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.25 Total: -2.41 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.09 Total: -61.74 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.89 -9.49 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.202 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds