Wall clock time and date at job start Tue Mar 31 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.87423 * 2 1 4 4 C 1.55136 * 110.99168 * 236.16025 * 2 1 3 5 5 C 1.54321 * 103.02220 * 206.25261 * 4 2 1 6 6 N 1.47441 * 107.23085 * 22.28334 * 5 4 2 7 7 C 1.46893 * 111.00254 * 123.25853 * 6 5 4 8 8 C 1.50705 * 109.47448 * 69.87324 * 7 6 5 9 9 O 1.21285 * 119.99408 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00442 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00015 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46915 * 179.97438 * 11 10 8 13 13 C 1.31005 * 119.99776 * 125.00274 * 12 11 10 14 14 C 1.50702 * 119.99932 * 180.27660 * 13 12 11 15 15 N 1.46500 * 109.47089 * 124.72256 * 14 13 12 16 16 C 1.36938 * 119.99971 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99921 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00313 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99846 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47084 * 89.99934 * 20 18 16 22 22 H 1.48502 * 109.47397 * 210.00339 * 20 18 16 23 23 H 1.48507 * 109.47187 * 330.00315 * 20 18 16 24 24 C 1.47846 * 108.56760 * 0.98778 * 6 5 4 25 25 H 1.09004 * 109.46722 * 182.39139 * 1 2 3 26 26 H 1.09004 * 109.46660 * 302.38341 * 1 2 3 27 27 H 1.08996 * 109.47284 * 62.38575 * 1 2 3 28 28 H 1.08999 * 110.70995 * 87.86958 * 4 2 1 29 29 H 1.09005 * 110.85208 * 324.70620 * 4 2 1 30 30 H 1.08996 * 109.88835 * 262.88020 * 5 4 2 31 31 H 1.08997 * 109.88884 * 141.68853 * 5 4 2 32 32 H 1.08994 * 109.47372 * 309.87122 * 7 6 5 33 33 H 1.09004 * 109.47617 * 189.87101 * 7 6 5 34 34 H 0.97006 * 119.99902 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47251 * 59.99732 * 11 10 8 36 36 H 1.08994 * 109.46778 * 299.99704 * 11 10 8 37 37 H 1.08002 * 120.00511 * 305.00212 * 12 11 10 38 38 H 1.08002 * 119.99708 * 359.97438 * 13 12 11 39 39 H 1.09002 * 109.47005 * 244.72313 * 14 13 12 40 40 H 1.08999 * 109.47073 * 4.72010 * 14 13 12 41 41 H 0.96998 * 119.99957 * 359.97438 * 15 14 13 42 42 H 0.96993 * 120.00156 * 179.97438 * 19 18 16 43 43 H 1.09001 * 110.37157 * 94.73630 * 24 6 5 44 44 H 1.08997 * 110.37652 * 217.07706 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0857 -0.8066 -1.2030 5 6 3.4693 -1.2708 -0.7011 6 7 3.4314 -1.2423 0.7725 7 6 3.7613 -2.5593 1.3332 8 6 5.2208 -2.8534 1.0999 9 8 5.9174 -2.0455 0.5229 10 7 5.7517 -4.0145 1.5315 11 6 7.1704 -4.3005 1.3042 12 6 7.5089 -5.6517 1.8795 13 6 8.0622 -6.5661 1.1220 14 6 8.3950 -7.9194 1.6957 15 7 7.7573 -8.9623 0.8883 16 6 7.9199 -10.2808 1.2205 17 1 8.5180 -10.5517 2.0780 18 6 7.3152 -11.2689 0.4558 19 7 6.5851 -10.9386 -0.5883 20 14 7.5377 -13.0674 0.9086 21 1 6.4602 -13.4794 1.8437 22 1 7.4717 -13.8991 -0.3200 23 1 8.8582 -13.2537 1.5621 24 6 2.0850 -0.8064 1.2005 25 1 -0.3633 -1.0268 0.0429 26 1 -0.3633 0.5504 0.8679 27 1 -0.3633 0.4763 -0.9106 28 1 2.1884 -0.1683 -2.0806 29 1 1.4485 -1.6630 -1.4236 30 1 4.2421 -0.5939 -1.0653 31 1 3.6682 -2.2849 -1.0474 32 1 3.1545 -3.3234 0.8473 33 1 3.5572 -2.5600 2.4040 34 1 5.1944 -4.6609 1.9927 35 1 7.7775 -3.5367 1.7901 36 1 7.3741 -4.2998 0.2335 37 1 7.2954 -5.8661 2.9163 38 1 8.2754 -6.3518 0.0852 39 1 9.4755 -8.0623 1.6861 40 1 8.0296 -7.9792 2.7209 41 1 7.2198 -8.7189 0.1184 42 1 6.1629 -11.6291 -1.1228 43 1 1.4524 -1.6710 1.4018 44 1 2.1545 -0.1720 2.0841 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497675219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:16 Heat of formation + Delta-G solvation = -31.857976 kcal Electronic energy + Delta-G solvation = -21048.028359 eV Core-core repulsion = 17806.698346 eV Total energy + Delta-G solvation = -3241.330013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04529 -39.53957 -37.65144 -36.19268 -34.45399 -34.23267 -32.44721 -30.79003 -29.40426 -27.97207 -26.17338 -25.31726 -23.60070 -22.24991 -21.53222 -21.22205 -20.55253 -19.12471 -17.97236 -17.43882 -17.33338 -16.70735 -16.38557 -15.99053 -15.63265 -15.36953 -15.15485 -14.82544 -14.65882 -14.44654 -14.02268 -13.90517 -13.65650 -13.48870 -13.34221 -13.07088 -12.92987 -12.81500 -12.75009 -12.19832 -12.14675 -12.00153 -11.88914 -11.78792 -11.59246 -11.51828 -11.08415 -10.92673 -10.34003 -9.95144 -9.30055 -9.02637 -7.97214 -5.27231 1.04927 1.47834 1.49557 1.58273 1.65459 2.26171 2.56285 3.06080 3.36669 3.62985 3.67451 3.73528 3.92676 3.94717 4.08754 4.22486 4.28199 4.30872 4.36364 4.47091 4.49574 4.59931 4.67309 4.70378 4.72858 4.85053 4.86840 4.91992 4.98739 4.99959 5.08921 5.20643 5.30081 5.37465 5.45379 5.46726 5.65554 5.83054 5.90709 5.99903 6.24983 6.59210 7.27704 7.30944 8.04965 8.28958 9.26363 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.002380 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.038197 B =11760.197324 C =12530.335580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.136 4.136 5 C 0.052 3.948 6 N -0.534 5.534 7 C 0.035 3.965 8 C 0.508 3.492 9 O -0.569 6.569 10 N -0.719 5.719 11 C 0.160 3.840 12 C -0.159 4.159 13 C -0.134 4.134 14 C 0.173 3.827 15 N -0.744 5.744 16 C -0.249 4.249 17 H 0.079 0.921 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.046 3.954 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.414 0.586 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.062 0.938 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 22.116 5.106 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.174 4.174 5 C -0.076 4.076 6 N -0.259 5.259 7 C -0.096 4.096 8 C 0.295 3.705 9 O -0.448 6.448 10 N -0.373 5.373 11 C 0.036 3.964 12 C -0.178 4.178 13 C -0.153 4.153 14 C 0.048 3.952 15 N -0.387 5.387 16 C -0.380 4.380 17 H 0.097 0.903 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.193 1.193 24 C -0.081 4.081 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.146 0.854 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.919 22.899 5.000 25.857 hybrid contribution -0.507 -1.940 -0.532 2.074 sum -11.427 20.960 4.468 24.287 Atomic orbital electron populations 1.21685 0.92865 1.02298 1.02613 1.22275 0.96651 0.99263 0.93574 0.90168 1.22890 0.95237 1.00407 0.98911 1.22684 0.97760 0.99932 0.87253 1.63222 1.28863 1.25252 1.08556 1.22210 0.91457 0.92012 1.03914 1.21092 0.90873 0.80750 0.77811 1.90682 1.63407 1.47932 1.42743 1.45961 1.11162 1.19984 1.60150 1.20165 0.81999 0.94462 0.99742 1.22782 1.00685 0.93849 1.00529 1.23003 0.98523 0.94142 0.99628 1.19909 0.95761 0.85632 0.93914 1.42536 1.60535 1.01951 1.33695 1.19681 1.24970 0.84133 1.09240 0.90339 1.25633 1.00680 1.02492 0.98118 1.69822 1.38652 1.33227 1.20387 0.85089 0.78120 0.79602 0.76629 1.21123 1.22211 1.19342 1.23224 0.86951 0.99115 0.98799 0.92402 0.91526 0.91929 0.90212 0.90806 0.92260 0.94200 0.90119 0.85356 0.74924 0.90557 0.92651 0.85051 0.87639 0.95242 0.94772 0.79441 0.93920 0.92009 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.30 71.98 0.67 -0.57 16 2 C -0.10 -1.26 3.63 -9.41 -0.03 -1.29 16 3 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 4 C -0.14 -2.04 6.41 31.77 0.20 -1.83 16 5 C 0.05 1.09 5.65 86.65 0.49 1.58 16 6 N -0.53 -10.70 4.85 -890.12 -4.32 -15.02 16 7 C 0.04 0.62 5.03 85.56 0.43 1.05 16 8 C 0.51 12.48 7.48 87.66 0.66 13.13 16 9 O -0.57 -18.96 15.54 -3.05 -0.05 -19.01 16 10 N -0.72 -15.54 5.55 -466.79 -2.59 -18.13 16 11 C 0.16 3.90 6.11 85.63 0.52 4.42 16 12 C -0.16 -4.03 9.24 25.64 0.24 -3.79 16 13 C -0.13 -4.24 9.24 25.64 0.24 -4.00 16 14 C 0.17 6.82 6.70 85.63 0.57 7.39 16 15 N -0.74 -38.00 5.59 -347.17 -1.94 -39.95 16 16 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 20 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.05 0.64 6.15 86.77 0.53 1.17 16 25 H 0.06 0.51 8.10 -2.39 -0.02 0.49 16 26 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.02 8.04 -2.38 -0.02 1.00 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 0.91 7.31 -2.39 -0.02 0.90 16 32 H 0.08 1.20 7.96 -2.39 -0.02 1.18 16 33 H 0.13 1.58 8.07 -2.38 -0.02 1.56 16 34 H 0.41 6.95 8.46 -92.70 -0.78 6.17 16 35 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.06 1.53 7.79 -2.39 -0.02 1.51 16 37 H 0.13 2.94 7.84 -2.91 -0.02 2.92 16 38 H 0.11 3.41 7.84 -2.91 -0.02 3.39 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.03 1.29 7.79 -2.39 -0.02 1.27 16 41 H 0.37 20.37 7.66 -92.71 -0.71 19.66 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.06 0.70 7.67 -2.39 -0.02 0.68 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -70.90 361.72 -1.28 -72.18 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.52 Total: 31.05 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.82 Total: 0.26 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -8.57 Total: -132.25 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.90 -1.28 -72.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.323 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds