Wall clock time and date at job start Tue Mar 31 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.87400 * 2 1 4 4 C 1.55146 * 110.98977 * 236.15776 * 2 1 3 5 5 C 1.54314 * 103.01521 * 206.25659 * 4 2 1 6 6 N 1.47436 * 107.23707 * 22.28077 * 5 4 2 7 7 C 1.46899 * 111.00006 * 123.25891 * 6 5 4 8 8 C 1.50702 * 109.47120 * 69.87663 * 7 6 5 9 9 O 1.21285 * 120.00308 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99823 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99784 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.31007 * 120.00400 * 127.00487 * 12 11 10 14 14 C 1.50695 * 119.99666 * 7.56139 * 13 12 11 15 15 N 1.46496 * 109.47317 * 127.15371 * 14 13 12 16 16 C 1.36935 * 120.00093 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00152 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00265 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00258 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99621 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46876 * 90.00090 * 20 18 16 22 22 H 1.48498 * 109.46803 * 209.99843 * 20 18 16 23 23 H 1.48492 * 109.47467 * 329.99981 * 20 18 16 24 24 C 1.47844 * 108.56749 * 0.99090 * 6 5 4 25 25 H 1.08995 * 109.47076 * 182.39235 * 1 2 3 26 26 H 1.09003 * 109.47161 * 302.39232 * 1 2 3 27 27 H 1.08998 * 109.47251 * 62.38795 * 1 2 3 28 28 H 1.08994 * 110.70333 * 87.86822 * 4 2 1 29 29 H 1.09001 * 110.85004 * 324.70443 * 4 2 1 30 30 H 1.09000 * 109.88866 * 262.87240 * 5 4 2 31 31 H 1.09002 * 109.88812 * 141.69321 * 5 4 2 32 32 H 1.09002 * 109.47353 * 309.87749 * 7 6 5 33 33 H 1.09003 * 109.47044 * 189.87249 * 7 6 5 34 34 H 0.97002 * 120.00032 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47220 * 60.00054 * 11 10 8 36 36 H 1.09003 * 109.47050 * 299.99670 * 11 10 8 37 37 H 1.08000 * 120.00209 * 307.00157 * 12 11 10 38 38 H 1.07997 * 120.00128 * 187.56039 * 13 12 11 39 39 H 1.09007 * 109.47194 * 247.15625 * 14 13 12 40 40 H 1.09002 * 109.47221 * 7.15049 * 14 13 12 41 41 H 0.96999 * 120.00171 * 0.02562 * 15 14 13 42 42 H 0.96998 * 119.99903 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.37475 * 94.73655 * 24 6 5 44 44 H 1.08999 * 110.37276 * 217.07106 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2031 5 6 3.4691 -1.2709 -0.7010 6 7 3.4312 -1.2423 0.7726 7 6 3.7611 -2.5594 1.3333 8 6 5.2206 -2.8534 1.1001 9 8 5.9174 -2.0455 0.5231 10 7 5.7515 -4.0146 1.5317 11 6 7.1702 -4.3007 1.3045 12 6 7.5084 -5.6522 1.8787 13 6 8.0974 -6.5528 1.1314 14 6 8.5902 -6.1848 -0.2443 15 7 10.0001 -6.5606 -0.3747 16 6 10.6667 -6.3220 -1.5468 17 1 10.1531 -5.8565 -2.3751 18 6 12.0026 -6.6786 -1.6706 19 7 12.6434 -6.4488 -2.7970 20 14 12.8910 -7.4831 -0.2379 21 1 12.7459 -8.9582 -0.3309 22 1 14.3311 -7.1236 -0.2837 23 1 12.3025 -7.0074 1.0397 24 6 2.0849 -0.8064 1.2005 25 1 -0.3633 -1.0267 0.0429 26 1 -0.3634 0.5505 0.8678 27 1 -0.3634 0.4763 -0.9106 28 1 2.1883 -0.1684 -2.0806 29 1 1.4485 -1.6631 -1.4235 30 1 4.2420 -0.5941 -1.0653 31 1 3.6681 -2.2851 -1.0473 32 1 3.1544 -3.3235 0.8474 33 1 3.5570 -2.5599 2.4041 34 1 5.1942 -4.6609 1.9929 35 1 7.7773 -3.5368 1.7905 36 1 7.3740 -4.2999 0.2337 37 1 7.2652 -5.8786 2.9063 38 1 8.2298 -7.5587 1.5014 39 1 8.0022 -6.7139 -0.9944 40 1 8.4854 -5.1100 -0.3924 41 1 10.4613 -6.9791 0.3690 42 1 13.5767 -6.6983 -2.8836 43 1 1.4523 -1.6709 1.4019 44 1 2.1544 -0.1720 2.0842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497675220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:19 Heat of formation + Delta-G solvation = 5.545646 kcal Electronic energy + Delta-G solvation = -21357.187624 eV Core-core repulsion = 18117.479554 eV Total energy + Delta-G solvation = -3239.708070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14780 -38.74084 -36.64922 -34.58659 -33.63518 -32.82561 -30.88956 -30.09432 -28.36400 -26.58601 -25.38018 -24.42916 -22.06402 -21.49223 -20.77449 -20.24982 -18.92124 -17.50491 -16.78863 -16.71184 -16.32234 -15.81011 -15.18140 -14.79109 -14.40576 -14.19171 -13.89097 -13.76218 -13.48656 -13.32518 -13.11332 -12.90988 -12.74996 -12.65115 -12.41940 -12.17663 -11.93166 -11.47014 -11.27571 -11.21915 -11.03022 -10.91138 -10.86064 -10.52920 -10.11751 -9.88147 -9.59562 -9.24388 -9.04682 -8.64980 -8.55398 -7.22235 -5.76188 -3.12458 2.13320 2.66591 3.15864 3.38267 3.40843 3.46005 3.80524 4.22786 4.33341 4.55212 4.59660 4.71266 4.91263 4.95904 4.97420 5.01322 5.05170 5.14604 5.19506 5.27491 5.38956 5.40307 5.52332 5.57480 5.58273 5.64540 5.69115 5.75317 5.82507 5.88983 6.06314 6.07890 6.28112 6.44206 6.50460 6.66460 6.68081 6.76632 7.02458 7.51566 7.99427 8.27406 8.42350 9.20781 9.92682 10.12246 11.41989 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032617 B = 0.002543 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.245468 B =11008.592632 C =11558.441374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.141 4.141 5 C 0.050 3.950 6 N -0.513 5.513 7 C 0.033 3.967 8 C 0.508 3.492 9 O -0.517 6.517 10 N -0.728 5.728 11 C 0.140 3.860 12 C -0.192 4.192 13 C -0.120 4.120 14 C 0.166 3.834 15 N -0.751 5.751 16 C -0.246 4.246 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.046 3.954 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.397 0.603 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.036 0.964 40 H 0.044 0.956 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.047 0.953 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.762 8.264 11.364 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.179 4.179 5 C -0.077 4.077 6 N -0.237 5.237 7 C -0.099 4.099 8 C 0.292 3.708 9 O -0.391 6.391 10 N -0.381 5.381 11 C 0.018 3.982 12 C -0.212 4.212 13 C -0.139 4.139 14 C 0.040 3.960 15 N -0.397 5.397 16 C -0.376 4.376 17 H 0.109 0.891 18 C -0.192 4.192 19 N -0.580 5.580 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.081 4.081 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.230 0.770 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.796 9.295 10.866 29.494 hybrid contribution 0.001 -1.685 1.032 1.976 sum -25.795 7.610 11.898 29.409 Atomic orbital electron populations 1.21717 0.94355 1.01843 1.01992 1.22288 0.95513 0.99934 0.94401 0.89614 1.22919 0.96667 0.99939 0.98422 1.22804 0.96988 1.01409 0.86522 1.63278 1.26991 1.24553 1.08890 1.22161 0.93822 0.91851 1.02075 1.20479 0.89692 0.81423 0.79181 1.90743 1.61963 1.46241 1.40165 1.46007 1.11544 1.19864 1.60709 1.20544 0.80565 0.94819 1.02254 1.22646 1.04567 0.94836 0.99114 1.23311 0.95448 0.98282 0.96880 1.19971 0.86266 0.98318 0.91434 1.42616 1.07059 1.74903 1.15084 1.19068 0.93549 1.34045 0.90914 0.89119 1.24684 0.96498 1.01136 0.96835 1.69703 1.10561 1.52941 1.24824 0.86520 0.79439 0.79547 0.82884 1.21059 1.21647 1.20291 1.23142 0.88042 0.98425 0.98487 0.92705 0.92403 0.92309 0.90591 0.91537 0.89614 0.92856 0.91847 0.88089 0.76961 0.91038 0.89299 0.87002 0.86946 0.94609 0.93884 0.80554 0.93005 0.93449 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.30 37.16 0.35 -0.40 16 2 C -0.10 -0.72 3.63 -88.48 -0.32 -1.04 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.14 -1.10 6.41 -24.91 -0.16 -1.26 16 5 C 0.05 0.53 5.65 -2.84 -0.02 0.52 16 6 N -0.51 -5.34 4.85 -232.70 -1.13 -6.47 16 7 C 0.03 0.29 5.03 -4.98 -0.03 0.27 16 8 C 0.51 6.45 7.48 -10.98 -0.08 6.37 16 9 O -0.52 -9.03 15.55 5.55 0.09 -8.94 16 10 N -0.73 -8.00 5.55 -61.47 -0.34 -8.35 16 11 C 0.14 1.93 5.76 -5.20 -0.03 1.90 16 12 C -0.19 -2.43 9.63 -36.03 -0.35 -2.78 16 13 C -0.12 -1.80 9.63 -36.03 -0.35 -2.15 16 14 C 0.17 3.26 6.34 -5.20 -0.03 3.23 16 15 N -0.75 -18.30 5.40 -61.09 -0.33 -18.63 16 16 C -0.25 -7.15 10.47 -15.06 -0.16 -7.31 16 17 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 20 Si 0.89 22.40 27.73 -169.99 -4.71 17.69 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 24 C 0.05 0.35 6.15 -2.30 -0.01 0.34 16 25 H 0.05 0.28 8.10 -51.93 -0.42 -0.14 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.59 7.31 -51.93 -0.38 0.21 16 32 H 0.06 0.47 7.96 -51.93 -0.41 0.05 16 33 H 0.10 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.40 3.03 8.46 -40.82 -0.35 2.68 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.45 5.29 -51.93 -0.27 1.17 16 37 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.87 5.30 -51.93 -0.28 0.60 16 41 H 0.36 8.54 5.52 -40.82 -0.23 8.31 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -34.87 354.12 -8.99 -43.86 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.39 Total: 6.80 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.28 Total: -2.28 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -1.02 Total: -62.46 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.87 -8.99 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.402 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds