Wall clock time and date at job start Tue Mar 31 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.87400 * 2 1 4 4 C 1.55146 * 110.98977 * 236.15776 * 2 1 3 5 5 C 1.54314 * 103.01521 * 206.25659 * 4 2 1 6 6 N 1.47436 * 107.23707 * 22.28077 * 5 4 2 7 7 C 1.46899 * 111.00006 * 123.25891 * 6 5 4 8 8 C 1.50702 * 109.47120 * 69.87663 * 7 6 5 9 9 O 1.21285 * 120.00308 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99823 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99784 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.31007 * 120.00400 * 127.00487 * 12 11 10 14 14 C 1.50695 * 119.99666 * 7.56139 * 13 12 11 15 15 N 1.46496 * 109.47317 * 127.15371 * 14 13 12 16 16 C 1.36935 * 120.00093 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00152 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00265 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00258 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99621 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46876 * 90.00090 * 20 18 16 22 22 H 1.48498 * 109.46803 * 209.99843 * 20 18 16 23 23 H 1.48492 * 109.47467 * 329.99981 * 20 18 16 24 24 C 1.47844 * 108.56749 * 0.99090 * 6 5 4 25 25 H 1.08995 * 109.47076 * 182.39235 * 1 2 3 26 26 H 1.09003 * 109.47161 * 302.39232 * 1 2 3 27 27 H 1.08998 * 109.47251 * 62.38795 * 1 2 3 28 28 H 1.08994 * 110.70333 * 87.86822 * 4 2 1 29 29 H 1.09001 * 110.85004 * 324.70443 * 4 2 1 30 30 H 1.09000 * 109.88866 * 262.87240 * 5 4 2 31 31 H 1.09002 * 109.88812 * 141.69321 * 5 4 2 32 32 H 1.09002 * 109.47353 * 309.87749 * 7 6 5 33 33 H 1.09003 * 109.47044 * 189.87249 * 7 6 5 34 34 H 0.97002 * 120.00032 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47220 * 60.00054 * 11 10 8 36 36 H 1.09003 * 109.47050 * 299.99670 * 11 10 8 37 37 H 1.08000 * 120.00209 * 307.00157 * 12 11 10 38 38 H 1.07997 * 120.00128 * 187.56039 * 13 12 11 39 39 H 1.09007 * 109.47194 * 247.15625 * 14 13 12 40 40 H 1.09002 * 109.47221 * 7.15049 * 14 13 12 41 41 H 0.96999 * 120.00171 * 0.02562 * 15 14 13 42 42 H 0.96998 * 119.99903 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.37475 * 94.73655 * 24 6 5 44 44 H 1.08999 * 110.37276 * 217.07106 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2031 5 6 3.4691 -1.2709 -0.7010 6 7 3.4312 -1.2423 0.7726 7 6 3.7611 -2.5594 1.3333 8 6 5.2206 -2.8534 1.1001 9 8 5.9174 -2.0455 0.5231 10 7 5.7515 -4.0146 1.5317 11 6 7.1702 -4.3007 1.3045 12 6 7.5084 -5.6522 1.8787 13 6 8.0974 -6.5528 1.1314 14 6 8.5902 -6.1848 -0.2443 15 7 10.0001 -6.5606 -0.3747 16 6 10.6667 -6.3220 -1.5468 17 1 10.1531 -5.8565 -2.3751 18 6 12.0026 -6.6786 -1.6706 19 7 12.6434 -6.4488 -2.7970 20 14 12.8910 -7.4831 -0.2379 21 1 12.7459 -8.9582 -0.3309 22 1 14.3311 -7.1236 -0.2837 23 1 12.3025 -7.0074 1.0397 24 6 2.0849 -0.8064 1.2005 25 1 -0.3633 -1.0267 0.0429 26 1 -0.3634 0.5505 0.8678 27 1 -0.3634 0.4763 -0.9106 28 1 2.1883 -0.1684 -2.0806 29 1 1.4485 -1.6631 -1.4235 30 1 4.2420 -0.5941 -1.0653 31 1 3.6681 -2.2851 -1.0473 32 1 3.1544 -3.3235 0.8474 33 1 3.5570 -2.5599 2.4041 34 1 5.1942 -4.6609 1.9929 35 1 7.7773 -3.5368 1.7905 36 1 7.3740 -4.2999 0.2337 37 1 7.2652 -5.8786 2.9063 38 1 8.2298 -7.5587 1.5014 39 1 8.0022 -6.7139 -0.9944 40 1 8.4854 -5.1100 -0.3924 41 1 10.4613 -6.9791 0.3690 42 1 13.5767 -6.6983 -2.8836 43 1 1.4523 -1.6709 1.4019 44 1 2.1544 -0.1720 2.0842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497675220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:19 Heat of formation + Delta-G solvation = -21.439513 kcal Electronic energy + Delta-G solvation = -21358.357789 eV Core-core repulsion = 18117.479554 eV Total energy + Delta-G solvation = -3240.878235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05551 -39.57284 -38.02604 -36.15427 -34.48083 -34.22189 -32.81828 -30.79418 -29.28236 -27.86639 -26.51711 -25.33643 -24.05786 -22.31762 -21.46669 -21.12561 -20.45255 -19.16235 -17.79883 -17.55396 -17.41938 -16.82998 -16.45073 -16.04645 -15.77804 -15.47594 -15.10796 -14.82878 -14.55641 -14.35444 -14.29385 -14.02420 -13.94866 -13.64112 -13.46280 -13.09686 -13.01482 -12.87137 -12.74926 -12.22017 -12.14146 -11.89280 -11.88473 -11.66087 -11.59081 -11.51640 -11.08988 -10.93061 -10.33558 -9.94766 -9.29094 -9.27840 -8.06369 -5.41593 1.01443 1.36310 1.41431 1.49078 1.67856 2.25410 2.46383 3.06317 3.24407 3.63672 3.67828 3.74218 3.83867 3.94520 3.95183 4.10907 4.27917 4.30083 4.32950 4.37417 4.49496 4.58389 4.60636 4.70521 4.83164 4.85497 4.87546 4.87908 4.98932 5.05314 5.09464 5.21347 5.30757 5.40605 5.45616 5.54370 5.68472 5.85482 5.91842 6.02471 6.17211 6.64440 7.03417 7.33851 7.77420 7.99263 9.15120 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032617 B = 0.002543 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.245468 B =11008.592632 C =11558.441374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.135 4.135 5 C 0.051 3.949 6 N -0.540 5.540 7 C 0.040 3.960 8 C 0.502 3.498 9 O -0.575 6.575 10 N -0.711 5.711 11 C 0.139 3.861 12 C -0.152 4.152 13 C -0.140 4.140 14 C 0.162 3.838 15 N -0.753 5.753 16 C -0.244 4.244 17 H 0.051 0.949 18 C -0.067 4.067 19 N -0.984 5.984 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.250 1.250 24 C 0.048 3.952 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.418 0.582 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.156 0.844 38 H 0.136 0.864 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.369 0.631 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.057 7.000 14.967 33.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.173 4.173 5 C -0.077 4.077 6 N -0.264 5.264 7 C -0.091 4.091 8 C 0.288 3.712 9 O -0.453 6.453 10 N -0.365 5.365 11 C 0.015 3.985 12 C -0.171 4.171 13 C -0.159 4.159 14 C 0.037 3.963 15 N -0.399 5.399 16 C -0.374 4.374 17 H 0.069 0.931 18 C -0.258 4.258 19 N -0.634 5.634 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.174 1.174 24 C -0.078 4.078 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.203 0.797 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -28.174 8.003 14.523 32.692 hybrid contribution 0.625 -1.177 -0.156 1.341 sum -27.550 6.827 14.367 31.812 Atomic orbital electron populations 1.21675 0.92634 1.02469 1.02552 1.22280 0.96807 0.99142 0.93687 0.90623 1.22881 0.95135 1.00497 0.98815 1.22661 0.97696 0.99896 0.87398 1.63174 1.29087 1.25723 1.08449 1.22200 0.90920 0.91946 1.04041 1.21293 0.91136 0.80872 0.77860 1.90727 1.63625 1.48180 1.42746 1.45801 1.10553 1.19986 1.60183 1.20349 0.82225 0.95617 1.00308 1.22845 1.01403 0.92596 1.00249 1.23064 0.98122 1.00148 0.94568 1.20051 0.83905 0.97483 0.94869 1.42593 1.08807 1.74906 1.13605 1.19028 0.93884 1.32865 0.91666 0.93136 1.25640 0.97470 1.02459 1.00263 1.69904 1.10937 1.54865 1.27658 0.85280 0.77315 0.78672 0.79730 1.19805 1.22100 1.17394 1.23206 0.86826 0.99213 0.98595 0.92024 0.91529 0.92099 0.90610 0.90320 0.93036 0.94014 0.89441 0.84998 0.74438 0.92258 0.92598 0.82621 0.84623 0.95412 0.95075 0.79723 0.93157 0.91442 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.30 71.98 0.67 -0.44 16 2 C -0.10 -1.26 3.63 -9.41 -0.03 -1.29 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.13 -2.03 6.41 31.78 0.20 -1.82 16 5 C 0.05 1.13 5.65 86.65 0.49 1.62 16 6 N -0.54 -10.76 4.85 -890.14 -4.32 -15.08 16 7 C 0.04 0.63 5.03 85.56 0.43 1.06 16 8 C 0.50 12.42 7.48 87.66 0.66 13.07 16 9 O -0.57 -20.93 15.55 -3.05 -0.05 -20.98 16 10 N -0.71 -14.30 5.55 -466.78 -2.59 -16.89 16 11 C 0.14 3.69 5.76 85.63 0.49 4.19 16 12 C -0.15 -3.32 9.63 25.64 0.25 -3.08 16 13 C -0.14 -3.85 9.63 25.64 0.25 -3.60 16 14 C 0.16 6.40 6.34 85.63 0.54 6.95 16 15 N -0.75 -36.62 5.40 -347.18 -1.87 -38.49 16 16 C -0.24 -14.60 10.47 84.03 0.88 -13.72 16 17 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 18 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 19 N -0.98 -64.91 13.97 21.65 0.30 -64.60 16 20 Si 0.96 46.17 27.73 68.60 1.90 48.08 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 24 C 0.05 0.62 6.15 86.77 0.53 1.16 16 25 H 0.06 0.44 8.10 -2.39 -0.02 0.42 16 26 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.00 8.04 -2.39 -0.02 0.98 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 0.97 7.31 -2.39 -0.02 0.95 16 32 H 0.09 1.00 7.96 -2.39 -0.02 0.99 16 33 H 0.13 1.29 8.07 -2.39 -0.02 1.27 16 34 H 0.42 4.84 8.46 -92.71 -0.78 4.06 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.89 5.29 -2.39 -0.01 1.88 16 37 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.03 1.13 8.14 -2.38 -0.02 1.12 16 40 H 0.03 1.32 5.30 -2.39 -0.01 1.31 16 41 H 0.37 16.69 5.52 -92.71 -0.51 16.18 16 42 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 43 H 0.07 0.61 7.67 -2.39 -0.02 0.59 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -80.62 354.12 -1.17 -81.79 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -0.37 Total: 25.69 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.82 Total: 0.49 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -8.48 Total: -135.07 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.08 kcal Total: -80.62 -1.17 -81.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.354 kcal (2) G-P(sol) polarization free energy of solvation -80.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds