Wall clock time and date at job start Tue Mar 31 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47240 * 2 1 4 4 C 1.52992 * 109.47484 * 239.99622 * 2 1 3 5 5 N 1.46507 * 109.47415 * 185.00097 * 4 2 1 6 6 C 1.46505 * 119.99548 * 270.00426 * 5 4 2 7 7 C 1.36931 * 119.99955 * 89.99900 * 5 4 2 8 8 H 1.07999 * 119.99807 * 21.96576 * 7 5 4 9 9 C 1.38812 * 119.99864 * 201.96636 * 7 5 4 10 10 N 1.31613 * 120.00412 * 11.84493 * 9 7 5 11 11 Si 1.86802 * 119.99797 * 191.84465 * 9 7 5 12 12 H 1.48499 * 109.47243 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47161 * 119.99780 * 11 9 7 14 14 H 1.48492 * 109.47228 * 240.00003 * 11 9 7 15 15 N 1.46500 * 109.46954 * 119.99428 * 2 1 3 16 16 C 1.34775 * 120.00218 * 275.00599 * 15 2 1 17 17 O 1.21278 * 120.00101 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99950 * 180.02562 * 16 15 2 19 19 C 1.56248 * 116.68839 * 297.57015 * 18 16 15 20 20 C 1.55911 * 102.63582 * 199.97087 * 19 18 16 21 21 N 1.49516 * 105.39245 * 0.46981 * 20 19 18 22 22 C 1.49527 * 105.92505 * 287.97013 * 21 20 19 23 23 C 1.54656 * 105.28219 * 71.26335 * 22 21 20 24 24 C 1.50460 * 102.03755 * 34.38103 * 21 20 19 25 25 H 1.08994 * 109.47436 * 300.00580 * 1 2 3 26 26 H 1.09002 * 109.46356 * 60.00293 * 1 2 3 27 27 H 1.08994 * 109.46713 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47450 * 305.00493 * 4 2 1 29 29 H 1.09009 * 109.47046 * 65.00342 * 4 2 1 30 30 H 1.09001 * 109.47191 * 94.24488 * 6 5 4 31 31 H 1.09003 * 109.46539 * 214.23986 * 6 5 4 32 32 H 1.08991 * 109.47394 * 334.23534 * 6 5 4 33 33 H 0.97002 * 120.00606 * 180.02562 * 10 9 7 34 34 H 0.97002 * 119.99978 * 94.99965 * 15 2 1 35 35 H 1.08997 * 110.66473 * 319.47588 * 19 18 16 36 36 H 1.08993 * 110.66838 * 82.61254 * 19 18 16 37 37 H 1.09004 * 110.87696 * 241.14476 * 20 19 18 38 38 H 1.08992 * 109.58164 * 119.12782 * 20 19 18 39 39 H 1.08996 * 110.28039 * 190.21568 * 22 21 20 40 40 H 1.08997 * 110.28036 * 312.30675 * 22 21 20 41 41 H 1.09005 * 110.66570 * 242.22697 * 23 22 21 42 42 H 1.08997 * 110.67045 * 119.09215 * 23 22 21 43 43 H 1.09004 * 111.91042 * 188.40030 * 24 21 20 44 44 H 1.09001 * 111.96745 * 62.21155 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5002 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7611 7 6 4.0851 -1.9158 -0.6020 8 1 3.5318 -2.8380 -0.5029 9 6 5.3890 -1.8348 -0.1330 10 7 5.9827 -0.6640 -0.0379 11 14 6.3013 -3.3876 0.3631 12 1 5.4193 -4.5654 0.1625 13 1 7.5199 -3.5343 -0.4728 14 1 6.6900 -3.2977 1.7934 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0181 2.3572 17 8 1.8589 1.1587 2.4115 18 6 2.6498 -0.7283 3.5876 19 6 1.7751 -1.9065 4.1245 20 6 2.2567 -2.0434 5.6011 21 7 3.2978 -0.9850 5.7787 22 6 4.4922 -1.4512 5.0092 23 6 4.0992 -1.3078 3.5203 24 6 2.7732 0.1211 4.9039 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 1.6055 -1.7197 -1.2951 29 1 1.7518 -0.1583 -2.1369 30 1 4.6026 0.9455 -0.9799 31 1 5.2404 -0.2028 -2.1812 32 1 3.7811 0.7485 -2.5467 33 1 6.8940 -0.6074 0.2895 34 1 2.2490 -1.6317 1.1528 35 1 0.7157 -1.6574 4.0645 36 1 1.9874 -2.8242 3.5762 37 1 2.6859 -3.0293 5.7798 38 1 1.4195 -1.8669 6.2762 39 1 5.3549 -0.8242 5.2344 40 1 4.7098 -2.4931 5.2440 41 1 4.1026 -2.2794 3.0262 42 1 4.7678 -0.6137 3.0110 43 1 3.4935 0.9325 4.7984 44 1 1.8044 0.4859 5.2449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498426989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:56 Heat of formation + Delta-G solvation = 7.860367 kcal Electronic energy + Delta-G solvation = -24281.985208 eV Core-core repulsion = 21042.377512 eV Total energy + Delta-G solvation = -3239.607696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78011 -38.51477 -36.23071 -33.96415 -31.64128 -30.65095 -30.43353 -29.37289 -27.83273 -26.19651 -25.63800 -22.86651 -22.31598 -21.43390 -20.49835 -19.87148 -18.81554 -16.83459 -16.41275 -15.87921 -15.57834 -15.13489 -14.94532 -14.33539 -13.95639 -13.67248 -13.17614 -13.01797 -12.85090 -12.60419 -12.45273 -12.14476 -11.96999 -11.88334 -11.54174 -11.41850 -11.33438 -11.25802 -11.03657 -10.88731 -10.74860 -10.49500 -10.33410 -10.27007 -10.06897 -10.03519 -9.87329 -9.13169 -8.91631 -8.61801 -8.25328 -6.82111 -5.78144 -3.24008 3.22630 3.27368 3.35885 3.37949 3.84355 4.03631 4.40653 4.67694 4.76459 5.03525 5.18315 5.29417 5.31307 5.32096 5.42322 5.49845 5.63853 5.67510 5.76579 5.82986 5.88206 5.89057 5.96278 5.99390 6.08554 6.13294 6.15154 6.23874 6.26911 6.43648 6.46695 6.52066 6.69636 6.73262 6.78534 6.87673 7.30034 7.35732 7.66338 7.76241 8.30625 8.33477 8.96311 9.16087 9.80178 10.30471 11.25656 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.008672 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.685848 B = 3228.072830 C = 4565.168999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.065 0.935 9 C 0.011 3.989 10 N -0.896 5.896 11 Si 0.889 3.111 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.288 1.288 15 N -0.681 5.681 16 C 0.554 3.446 17 O -0.559 6.559 18 C -0.123 4.123 19 C -0.135 4.135 20 C 0.014 3.986 21 N -0.469 5.469 22 C 0.012 3.988 23 C -0.127 4.127 24 C 0.040 3.960 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.044 0.956 32 H -0.005 1.005 33 H 0.251 0.749 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -2.903 5.928 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.083 0.917 9 C -0.188 4.188 10 N -0.541 5.541 11 Si 0.719 3.281 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.215 1.215 15 N -0.330 5.330 16 C 0.339 3.661 17 O -0.439 6.439 18 C -0.128 4.128 19 C -0.174 4.174 20 C -0.115 4.115 21 N -0.189 5.189 22 C -0.116 4.116 23 C -0.166 4.166 24 C -0.089 4.089 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.062 0.938 34 H 0.239 0.761 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.604 -1.891 6.718 10.321 hybrid contribution 0.694 -1.530 -0.653 1.803 sum -6.910 -3.421 6.064 9.809 Atomic orbital electron populations 1.22153 0.96973 1.01175 1.01513 1.21821 0.91734 0.98398 0.87094 0.90602 1.21181 0.86009 0.97832 0.93619 1.43882 0.98854 1.22634 1.66602 1.20789 0.92948 0.90447 0.93838 1.19083 0.96942 0.89447 1.33000 0.91733 1.24922 0.98504 0.95902 0.99472 1.70080 1.13084 1.21404 1.49510 0.86441 0.80291 0.83246 0.78117 1.20408 1.21698 1.21480 1.45665 1.64672 1.14263 1.08352 1.19206 0.76986 0.86347 0.83551 1.90623 1.51855 1.15911 1.85476 1.23704 0.97447 0.96557 0.95095 1.23397 0.99532 0.97588 0.96922 1.23787 0.96092 0.96463 0.95170 1.69978 1.03669 1.05208 1.40061 1.23615 0.95059 1.01058 0.91916 1.23115 0.94105 1.02390 0.96991 1.24281 1.01243 0.94880 0.88519 0.93004 0.92294 0.93081 0.93433 0.93015 0.95403 0.93710 0.98617 0.93830 0.76144 0.90942 0.90670 0.90468 0.90210 0.89954 0.90731 0.90538 0.89597 0.89232 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 2 C 0.12 2.17 2.88 -67.93 -0.20 1.98 16 3 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.68 5.36 -4.04 -0.02 2.66 16 5 N -0.60 -13.83 2.82 -181.12 -0.51 -14.34 16 6 C 0.16 3.94 9.01 59.85 0.54 4.47 16 7 C -0.26 -6.26 8.02 -15.06 -0.12 -6.38 16 8 H 0.06 1.55 7.85 -52.49 -0.41 1.14 16 9 C 0.01 0.29 5.12 -17.43 -0.09 0.20 16 10 N -0.90 -24.37 10.59 55.49 0.59 -23.78 16 11 Si 0.89 20.23 29.57 -169.99 -5.03 15.20 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 15 N -0.68 -12.86 4.49 -53.81 -0.24 -13.10 16 16 C 0.55 10.87 7.25 -10.99 -0.08 10.79 16 17 O -0.56 -12.64 16.23 5.56 0.09 -12.55 16 18 C -0.12 -2.03 1.37 -149.92 -0.20 -2.23 16 19 C -0.14 -1.80 6.13 -23.43 -0.14 -1.94 16 20 C 0.01 0.17 6.64 -0.81 -0.01 0.17 16 21 N -0.47 -6.73 6.94 -221.24 -1.54 -8.26 16 22 C 0.01 0.18 6.61 -1.49 -0.01 0.17 16 23 C -0.13 -2.19 6.04 -24.12 -0.15 -2.33 16 24 C 0.04 0.63 6.05 0.43 0.00 0.63 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 29 H 0.05 0.90 7.86 -51.92 -0.41 0.49 16 30 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 31 H 0.04 1.15 7.18 -51.93 -0.37 0.78 16 32 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 33 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.40 7.55 7.40 -40.82 -0.30 7.25 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.95 7.86 -51.93 -0.41 0.55 16 37 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 41 H 0.08 1.34 7.86 -51.93 -0.41 0.94 16 42 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 43 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -28.46 345.79 -9.20 -37.66 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.65 Total: 7.83 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.12 Total: 6.13 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.70 Total: -59.49 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.46 -9.20 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498426989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.517 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds