Wall clock time and date at job start Tue Mar 31 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47520 * 2 1 4 4 C 1.53001 * 109.47288 * 120.00298 * 2 1 3 5 5 N 1.46493 * 109.47466 * 174.99900 * 4 2 1 6 6 C 1.46500 * 120.00043 * 270.00048 * 5 4 2 7 7 C 1.36936 * 119.99984 * 89.99716 * 5 4 2 8 8 H 1.08002 * 120.00273 * 23.80660 * 7 5 4 9 9 C 1.38812 * 120.00165 * 203.80663 * 7 5 4 10 10 N 1.31614 * 120.00326 * 10.95123 * 9 7 5 11 11 Si 1.86805 * 119.99886 * 190.95564 * 9 7 5 12 12 H 1.48495 * 109.47222 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47096 * 119.99947 * 11 9 7 14 14 H 1.48501 * 109.46975 * 239.99534 * 11 9 7 15 15 N 1.46506 * 109.47280 * 240.00176 * 2 1 3 16 16 C 1.34777 * 120.00138 * 84.99985 * 15 2 1 17 17 O 1.21278 * 119.99639 * 0.02562 * 16 15 2 18 18 C 1.50696 * 119.99944 * 179.97438 * 16 15 2 19 19 C 1.56240 * 116.69153 * 298.98594 * 18 16 15 20 20 C 1.54661 * 103.21589 * 158.95573 * 19 18 16 21 21 N 1.49518 * 105.28451 * 0.65943 * 20 19 18 22 22 C 1.49526 * 105.92313 * 71.25671 * 21 20 19 23 23 C 1.54651 * 105.28725 * 288.74007 * 22 21 20 24 24 C 1.50466 * 102.03496 * 324.85013 * 21 20 19 25 25 H 1.09001 * 109.47388 * 299.99949 * 1 2 3 26 26 H 1.09005 * 109.47149 * 59.99876 * 1 2 3 27 27 H 1.09002 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46443 * 295.00252 * 4 2 1 29 29 H 1.09002 * 109.46994 * 54.99647 * 4 2 1 30 30 H 1.09002 * 109.47143 * 94.86123 * 6 5 4 31 31 H 1.09002 * 109.46950 * 214.85657 * 6 5 4 32 32 H 1.08996 * 109.47399 * 334.85727 * 6 5 4 33 33 H 0.96994 * 120.00641 * 179.97438 * 10 9 7 34 34 H 0.97002 * 119.99535 * 265.00096 * 15 2 1 35 35 H 1.09001 * 110.66784 * 40.52240 * 19 18 16 36 36 H 1.08998 * 110.67069 * 277.39148 * 19 18 16 37 37 H 1.08999 * 110.27925 * 119.61237 * 20 19 18 38 38 H 1.09002 * 110.28101 * 241.70841 * 20 19 18 39 39 H 1.08995 * 110.27703 * 47.69615 * 22 21 20 40 40 H 1.09006 * 110.27571 * 169.78484 * 22 21 20 41 41 H 1.09003 * 110.67225 * 240.90743 * 23 22 21 42 42 H 1.08998 * 110.67275 * 117.77512 * 23 22 21 43 43 H 1.09003 * 111.90947 * 171.59679 * 24 21 20 44 44 H 1.09001 * 111.91284 * 297.74073 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9920 0.5611 7 6 4.2798 0.1647 1.7240 8 1 3.8844 0.8050 2.4987 9 6 5.5786 0.3466 1.2691 10 7 5.9910 -0.2799 0.1876 11 14 6.7412 1.4807 2.1919 12 1 6.0396 2.0606 3.3652 13 1 7.9233 0.7091 2.6530 14 1 7.1849 2.5745 1.2908 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8591 1.1586 -2.4115 18 6 2.6500 -0.7285 -3.5875 19 6 4.0866 -1.3376 -3.5082 20 6 4.0799 -2.4058 -4.6266 21 7 2.7200 -2.3231 -5.2426 22 6 2.6923 -1.0366 -6.0043 23 6 2.6562 0.0736 -4.9283 24 6 1.8559 -2.0021 -4.0533 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7516 -0.1584 2.1369 29 1 1.6053 -1.7199 1.2951 30 1 4.3585 -1.7623 -0.4787 31 1 5.0441 -2.2424 1.0922 32 1 3.4403 -2.8386 0.6016 33 1 6.8983 -0.1526 -0.1305 34 1 2.2490 -1.6318 -1.1526 35 1 4.2553 -1.7999 -2.5356 36 1 4.8394 -0.5753 -3.7087 37 1 4.8454 -2.1802 -5.3691 38 1 4.2433 -3.3970 -4.2035 39 1 3.5890 -0.9407 -6.6164 40 1 1.8003 -0.9867 -6.6289 41 1 1.7500 0.6719 -5.0230 42 1 3.5431 0.7036 -4.9956 43 1 0.8344 -1.7598 -4.3464 44 1 1.8820 -2.7949 -3.3058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498426998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:59 Heat of formation + Delta-G solvation = 8.352796 kcal Electronic energy + Delta-G solvation = -24039.030802 eV Core-core repulsion = 20799.444459 eV Total energy + Delta-G solvation = -3239.586343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94484 -38.61767 -36.27853 -34.00518 -31.57829 -30.68440 -30.50364 -29.61468 -28.00390 -26.20496 -25.61672 -22.94218 -22.28442 -21.47059 -20.70805 -19.95981 -18.75702 -16.89907 -16.75406 -16.03508 -15.37232 -15.26960 -14.91286 -14.38360 -14.06597 -13.68087 -13.31014 -13.14859 -12.76159 -12.66933 -12.47093 -12.14137 -12.02945 -12.00589 -11.67132 -11.45297 -11.33791 -11.18311 -11.10075 -10.86328 -10.78258 -10.56570 -10.50117 -10.24506 -10.05116 -9.93515 -9.87302 -9.33787 -8.94491 -8.60752 -8.34869 -6.75620 -5.74864 -3.20683 3.08870 3.36811 3.44774 3.45904 3.68073 4.05661 4.48976 4.49971 4.66569 4.96870 5.14871 5.19296 5.23585 5.30319 5.35115 5.47941 5.56601 5.65803 5.70025 5.76299 5.81785 5.86720 5.88790 5.95053 5.99349 6.00327 6.09843 6.20895 6.24664 6.35314 6.47107 6.53031 6.53607 6.62603 6.66380 6.88437 7.19493 7.29712 7.65021 7.79414 8.15223 8.37468 8.84801 9.21454 9.83513 10.31882 11.30136 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.006221 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.490203 B = 4500.016253 C = 5227.313044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.161 3.839 7 C -0.254 4.254 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.902 3.098 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.693 5.693 16 C 0.555 3.445 17 O -0.550 6.550 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.013 3.987 21 N -0.467 5.467 22 C 0.012 3.988 23 C -0.123 4.123 24 C 0.025 3.975 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.042 0.958 32 H -0.007 1.007 33 H 0.250 0.750 34 H 0.394 0.606 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 -5.513 -8.273 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.341 5.341 16 C 0.339 3.661 17 O -0.428 6.428 18 C -0.129 4.129 19 C -0.170 4.170 20 C -0.116 4.116 21 N -0.187 5.187 22 C -0.117 4.117 23 C -0.163 4.163 24 C -0.104 4.104 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.060 0.940 34 H 0.228 0.772 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.843 -5.309 -8.785 12.918 hybrid contribution 1.277 1.099 0.884 1.903 sum -6.565 -4.211 -7.901 11.102 Atomic orbital electron populations 1.22152 0.96913 1.01069 1.01653 1.21868 0.91633 0.99158 0.86392 0.89721 1.21198 0.85836 0.97188 0.94349 1.43867 0.99019 1.20835 1.68131 1.20883 0.94490 0.85052 0.97968 1.19200 0.94640 1.10523 1.14045 0.91476 1.25002 0.98870 0.99000 0.96378 1.70021 1.17108 1.45502 1.22158 0.86220 0.81041 0.80315 0.79162 1.20375 1.21716 1.21829 1.45698 1.65807 1.13586 1.09028 1.19174 0.77062 0.86410 0.83418 1.90639 1.51110 1.15832 1.85206 1.23689 0.97739 0.97007 0.94494 1.23222 0.94348 0.98543 1.00876 1.23640 0.91898 0.99694 0.96358 1.69952 1.05780 1.29060 1.13871 1.23620 1.02649 0.88628 0.96770 1.22980 1.03356 0.97755 0.92166 1.24512 0.97684 0.94883 0.93342 0.92114 0.93030 0.93185 0.92320 0.94058 0.94821 0.93940 0.98810 0.93995 0.77190 0.89419 0.90571 0.90602 0.89706 0.90529 0.90041 0.90701 0.90796 0.89486 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.17 2.88 -67.93 -0.20 1.98 16 3 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 4 C 0.14 2.72 5.33 -4.04 -0.02 2.70 16 5 N -0.60 -13.98 2.78 -181.12 -0.50 -14.49 16 6 C 0.16 3.60 7.60 59.85 0.45 4.06 16 7 C -0.25 -6.79 9.66 -15.06 -0.15 -6.93 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.01 0.16 5.14 -17.43 -0.09 0.07 16 10 N -0.90 -25.16 10.65 55.49 0.59 -24.57 16 11 Si 0.90 21.87 29.57 -169.99 -5.03 16.85 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 N -0.69 -12.42 4.42 -53.81 -0.24 -12.66 16 16 C 0.55 10.55 7.27 -10.99 -0.08 10.47 16 17 O -0.55 -12.47 16.21 5.56 0.09 -12.38 16 18 C -0.12 -1.91 1.39 -149.93 -0.21 -2.12 16 19 C -0.13 -2.00 6.03 -24.12 -0.15 -2.15 16 20 C 0.01 0.16 6.61 -1.49 -0.01 0.15 16 21 N -0.47 -5.83 6.94 -222.05 -1.54 -7.37 16 22 C 0.01 0.14 6.61 -1.49 -0.01 0.13 16 23 C -0.12 -1.74 5.68 -24.12 -0.14 -1.88 16 24 C 0.03 0.32 6.47 0.44 0.00 0.32 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 29 H 0.04 0.69 7.86 -51.93 -0.41 0.29 16 30 H 0.03 0.79 5.62 -51.93 -0.29 0.50 16 31 H 0.04 1.06 7.32 -51.93 -0.38 0.68 16 32 H -0.01 -0.13 7.84 -51.93 -0.41 -0.53 16 33 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 34 H 0.39 6.53 7.18 -40.82 -0.29 6.24 16 35 H 0.09 1.50 6.86 -51.93 -0.36 1.14 16 36 H 0.08 1.27 7.82 -51.93 -0.41 0.87 16 37 H 0.08 0.87 7.69 -51.93 -0.40 0.48 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.81 7.69 -51.93 -0.40 0.42 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 42 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -30.36 342.58 -9.18 -39.54 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.48 Total: 5.14 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.23 Total: 4.78 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -1.69 Total: -59.08 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.36 -9.18 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498426998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.893 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds