Wall clock time and date at job start Tue Mar 31 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.64650 * 2 1 4 4 C 1.54597 * 110.72437 * 236.85094 * 2 1 3 5 5 C 1.53990 * 105.14071 * 219.68334 * 4 2 1 6 6 N 1.47908 * 107.06020 * 358.77309 * 5 4 2 7 7 C 1.46897 * 111.00287 * 145.84371 * 6 5 4 8 8 C 1.50699 * 109.47332 * 183.55251 * 7 6 5 9 9 O 1.21280 * 119.99800 * 353.97863 * 8 7 6 10 10 N 1.34775 * 120.00136 * 173.97788 * 8 7 6 11 11 C 1.46503 * 119.99875 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46902 * 185.00750 * 11 10 8 13 13 N 1.46496 * 115.55501 * 279.54296 * 12 11 10 14 14 C 1.36942 * 119.99526 * 303.00612 * 13 12 11 15 15 H 1.07998 * 120.00408 * 4.47776 * 14 13 12 16 16 C 1.38816 * 119.99795 * 184.48201 * 14 13 12 17 17 N 1.31624 * 120.00009 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00103 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47204 * 89.99705 * 18 16 14 20 20 H 1.48495 * 109.47019 * 210.00074 * 18 16 14 21 21 H 1.48497 * 109.46981 * 329.99722 * 18 16 14 22 22 C 1.52998 * 117.49830 * 133.87118 * 12 11 10 23 23 C 1.53008 * 117.49897 * 65.21387 * 12 11 10 24 24 C 1.48537 * 105.81854 * 25.32864 * 6 5 4 25 25 H 1.09000 * 109.47204 * 181.70331 * 1 2 3 26 26 H 1.08994 * 109.47208 * 61.69763 * 1 2 3 27 27 H 1.09004 * 109.46616 * 301.69454 * 1 2 3 28 28 H 1.09004 * 110.30811 * 338.59639 * 4 2 1 29 29 H 1.09001 * 110.31334 * 100.66460 * 4 2 1 30 30 H 1.09001 * 109.91867 * 118.12419 * 5 4 2 31 31 H 1.09001 * 109.92142 * 239.22146 * 5 4 2 32 32 H 1.09001 * 109.47245 * 303.55487 * 7 6 5 33 33 H 1.08999 * 109.46768 * 63.54831 * 7 6 5 34 34 H 0.96997 * 120.00108 * 0.02562 * 10 8 7 35 35 H 1.08993 * 109.47243 * 305.00915 * 11 10 8 36 36 H 1.09000 * 109.46606 * 65.00982 * 11 10 8 37 37 H 0.97000 * 120.00759 * 122.99852 * 13 12 11 38 38 H 0.96995 * 120.00254 * 179.97438 * 17 16 14 39 39 H 1.09002 * 117.49812 * 0.02562 * 22 12 11 40 40 H 1.08996 * 117.50237 * 145.01883 * 22 12 11 41 41 H 1.08992 * 117.49677 * 214.97900 * 23 12 11 42 42 H 1.08996 * 117.49632 * 359.97438 * 23 12 11 43 43 H 1.08992 * 110.66693 * 202.36207 * 24 6 5 44 44 H 1.08999 * 110.66299 * 79.22897 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0770 -0.7907 -1.2106 5 6 3.2893 -1.5697 -0.6676 6 7 3.4319 -1.2105 0.7601 7 6 3.9213 -2.3524 1.5440 8 6 3.9707 -1.9763 3.0024 9 8 3.7371 -0.8359 3.3428 10 7 4.2745 -2.9071 3.9285 11 6 4.3231 -2.5413 5.3463 12 6 4.8086 -3.7387 6.1655 13 7 3.7941 -4.7520 6.4659 14 6 2.6475 -4.3982 7.1257 15 1 2.4576 -3.3613 7.3605 16 6 1.7292 -5.3724 7.4928 17 7 1.9604 -6.6361 7.2062 18 14 0.1654 -4.8899 8.3934 19 1 -0.9064 -4.6043 7.4061 20 1 -0.2603 -6.0043 9.2777 21 1 0.4198 -3.6776 9.2124 22 6 5.8851 -3.4820 7.2220 23 6 6.2413 -4.2216 5.9300 24 6 2.0783 -0.7965 1.2106 25 1 -0.3633 -1.0272 0.0305 26 1 -0.3633 0.4872 -0.9048 27 1 -0.3633 0.5400 0.8745 28 1 1.3207 -1.4807 -1.5849 29 1 2.3879 -0.1065 -2.0002 30 1 3.1161 -2.6414 -0.7653 31 1 4.1880 -1.2876 -1.2160 32 1 3.2491 -3.1999 1.4099 33 1 4.9208 -2.6242 1.2047 34 1 4.4617 -3.8191 3.6563 35 1 5.0093 -1.7055 5.4826 36 1 3.3269 -2.2519 5.6811 37 1 3.9345 -5.6735 6.1975 38 1 1.3190 -7.3168 7.4630 39 1 6.2470 -2.4599 7.3337 40 1 5.8387 -4.0672 8.1404 41 1 6.4289 -5.2930 5.9990 42 1 6.8376 -3.6864 5.1912 43 1 2.1445 -0.1593 2.0923 44 1 1.4561 -1.6688 1.4108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499351761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:07 Heat of formation + Delta-G solvation = 3.949562 kcal Electronic energy + Delta-G solvation = -22372.514978 eV Core-core repulsion = 19132.737696 eV Total energy + Delta-G solvation = -3239.777282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91190 -38.52952 -37.35203 -33.69608 -33.46182 -33.04198 -29.99085 -29.73650 -28.02312 -26.22156 -24.61811 -23.91490 -21.91167 -21.23788 -20.25802 -19.99699 -19.08441 -17.23202 -16.93774 -16.08785 -15.79822 -15.55536 -15.19946 -14.62892 -14.21025 -14.16418 -13.75214 -13.48987 -13.28458 -13.07209 -12.97657 -12.56798 -12.41630 -12.07454 -11.91045 -11.88994 -11.31285 -11.02462 -11.01795 -10.96978 -10.91164 -10.73544 -10.62340 -10.36583 -10.26702 -9.73481 -9.55354 -9.35725 -8.84600 -8.60592 -8.41903 -7.07800 -5.86962 -3.17201 2.95266 3.32496 3.39243 3.45293 3.46632 4.02096 4.41658 4.49552 4.55597 4.61888 4.79314 5.04798 5.08252 5.22786 5.23757 5.28080 5.31876 5.36610 5.39261 5.46611 5.55292 5.60552 5.62594 5.67515 5.79131 5.80920 5.87356 5.98412 6.09265 6.20073 6.22621 6.25150 6.43349 6.55876 6.63615 6.76985 6.81611 6.84019 6.91490 7.66206 7.91551 8.31077 8.59243 9.42584 9.95604 10.30808 11.34953 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.004233 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.037699 B = 6612.965540 C = 7788.382945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.082 0.918 4 C -0.127 4.127 5 C 0.034 3.966 6 N -0.499 5.499 7 C 0.027 3.973 8 C 0.509 3.491 9 O -0.534 6.534 10 N -0.712 5.712 11 C 0.151 3.849 12 C 0.132 3.868 13 N -0.688 5.688 14 C -0.239 4.239 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C -0.194 4.194 23 C -0.187 4.187 24 C 0.037 3.963 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 8.195 -15.347 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.165 4.165 5 C -0.094 4.094 6 N -0.224 5.224 7 C -0.105 4.105 8 C 0.294 3.706 9 O -0.411 6.411 10 N -0.363 5.363 11 C 0.026 3.974 12 C 0.037 3.963 13 N -0.327 5.327 14 C -0.370 4.370 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.236 4.236 23 C -0.225 4.225 24 C -0.090 4.090 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.223 0.777 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.891 9.463 -14.905 18.079 hybrid contribution -1.229 -1.472 0.289 1.939 sum 2.662 7.992 -14.616 16.870 Atomic orbital electron populations 1.21771 0.94626 1.01891 1.01803 1.22080 0.95326 0.99887 0.94323 0.89950 1.22482 0.96972 0.98971 0.98083 1.22898 0.98832 0.98184 0.89452 1.64589 1.24832 1.31555 1.01388 1.22196 1.02698 0.93403 0.92160 1.20332 0.77231 0.85587 0.87410 1.90648 1.48630 1.19852 1.81974 1.45891 1.70533 1.12749 1.07150 1.21147 1.02030 0.95539 0.78678 1.20162 0.84832 0.92707 0.98572 1.41816 1.17321 1.06013 1.67575 1.19172 0.95747 0.93128 1.28930 0.90918 1.24748 0.99185 0.95202 1.01356 1.69657 1.36925 0.99382 1.51986 0.86184 0.83341 0.77305 0.79365 1.21660 1.21703 1.20549 1.23452 1.05844 1.00149 0.94113 1.23065 0.98391 1.00486 1.00524 1.23473 0.87580 0.99023 0.98932 0.92707 0.92590 0.92291 0.91459 0.91124 0.93750 0.90297 0.91942 0.87915 0.76607 0.92081 0.90673 0.77725 0.93398 0.89971 0.88748 0.89100 0.89434 0.87926 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.15 37.16 0.34 -0.99 16 2 C -0.10 -1.03 3.66 -88.76 -0.32 -1.35 16 3 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 4 C -0.13 -1.15 6.51 -25.38 -0.17 -1.32 16 5 C 0.03 0.34 6.70 -2.75 -0.02 0.32 16 6 N -0.50 -6.48 5.11 -231.89 -1.19 -7.66 16 7 C 0.03 0.34 5.31 -4.98 -0.03 0.31 16 8 C 0.51 8.19 7.46 -10.99 -0.08 8.11 16 9 O -0.53 -10.39 14.27 5.56 0.08 -10.31 16 10 N -0.71 -11.33 5.51 -60.30 -0.33 -11.67 16 11 C 0.15 2.76 5.67 -4.04 -0.02 2.74 16 12 C 0.13 2.49 2.23 -131.82 -0.29 2.20 16 13 N -0.69 -16.29 5.53 -47.23 -0.26 -16.55 16 14 C -0.24 -6.39 9.46 -15.06 -0.14 -6.54 16 15 H 0.07 1.93 7.28 -52.49 -0.38 1.55 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.19 -3.37 10.11 -26.69 -0.27 -3.64 16 23 C -0.19 -2.94 10.13 -26.69 -0.27 -3.21 16 24 C 0.04 0.50 5.02 -1.89 -0.01 0.49 16 25 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.41 7.68 -51.93 -0.40 0.01 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.73 7.98 -51.93 -0.41 0.31 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 5.75 8.48 -40.82 -0.35 5.40 16 35 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 36 H 0.08 1.59 7.15 -51.93 -0.37 1.22 16 37 H 0.39 9.74 8.03 -40.82 -0.33 9.42 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 40 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.10 1.65 6.42 -51.93 -0.33 1.32 16 44 H 0.04 0.57 7.90 -51.93 -0.41 0.16 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -30.58 355.77 -9.60 -40.19 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.59 Total: 13.24 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.38 Total: -3.22 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -1.05 Total: -62.35 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.58 -9.60 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499351761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.136 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds