Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.27845 * 2 1 4 4 C 1.54604 * 110.31058 * 122.19155 * 2 1 3 5 5 C 1.54932 * 102.92005 * 140.87191 * 4 2 1 6 6 N 1.48529 * 103.23041 * 322.58806 * 5 4 2 7 7 C 1.46906 * 110.99759 * 159.72128 * 6 5 4 8 8 C 1.50699 * 109.47530 * 52.60455 * 7 6 5 9 9 O 1.21283 * 119.99699 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00173 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99967 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46908 * 174.42912 * 11 10 8 13 13 N 1.46500 * 115.55469 * 324.36684 * 12 11 10 14 14 C 1.36937 * 119.99462 * 294.96506 * 13 12 11 15 15 H 1.07999 * 120.00123 * 356.87597 * 14 13 12 16 16 C 1.38810 * 119.99618 * 176.60652 * 14 13 12 17 17 N 1.31614 * 120.00050 * 0.26600 * 16 14 13 18 18 Si 1.86806 * 119.99857 * 180.27660 * 16 14 13 19 19 H 1.48488 * 109.47437 * 89.99472 * 18 16 14 20 20 H 1.48501 * 109.46923 * 209.99888 * 18 16 14 21 21 H 1.48501 * 109.46933 * 329.99344 * 18 16 14 22 22 C 1.53001 * 117.49426 * 110.03562 * 12 11 10 23 23 C 1.53009 * 117.49585 * 178.69232 * 12 11 10 24 24 C 1.47897 * 105.81892 * 39.20880 * 6 5 4 25 25 H 1.09008 * 109.46978 * 182.08889 * 1 2 3 26 26 H 1.09001 * 109.47191 * 302.09151 * 1 2 3 27 27 H 1.09001 * 109.46994 * 62.09129 * 1 2 3 28 28 H 1.08996 * 110.72640 * 259.23742 * 4 2 1 29 29 H 1.09001 * 110.71909 * 22.51687 * 4 2 1 30 30 H 1.09002 * 110.66694 * 204.15220 * 5 4 2 31 31 H 1.09000 * 110.66622 * 81.02365 * 5 4 2 32 32 H 1.08998 * 109.47114 * 292.59793 * 7 6 5 33 33 H 1.09004 * 109.46923 * 172.60333 * 7 6 5 34 34 H 0.97000 * 119.99933 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.47185 * 54.42617 * 11 10 8 36 36 H 1.09000 * 109.47095 * 294.42857 * 11 10 8 37 37 H 0.96989 * 120.00030 * 114.95954 * 13 12 11 38 38 H 0.96998 * 120.00213 * 180.02562 * 17 16 14 39 39 H 1.09002 * 117.49831 * 214.99722 * 22 12 11 40 40 H 1.08995 * 117.50216 * 0.02562 * 22 12 11 41 41 H 1.08997 * 117.49488 * 359.97438 * 23 12 11 42 42 H 1.08996 * 117.49231 * 144.97475 * 23 12 11 43 43 H 1.09003 * 109.92104 * 94.02420 * 24 6 5 44 44 H 1.09003 * 109.91455 * 215.11911 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0666 -0.7724 1.2270 5 6 3.2855 -1.5354 0.6502 6 7 2.8313 -1.9230 -0.7098 7 6 3.9752 -2.2248 -1.5807 8 6 4.8665 -3.2361 -0.9070 9 8 4.5775 -3.6630 0.1908 10 7 5.9852 -3.6654 -1.5239 11 6 6.8519 -4.6481 -0.8687 12 6 7.9666 -5.0660 -1.8298 13 7 7.5858 -5.1477 -3.2420 14 6 6.6693 -6.0793 -3.6511 15 1 6.2651 -6.7867 -2.9422 16 6 6.2558 -6.1108 -4.9758 17 7 6.7484 -5.2486 -5.8397 18 14 4.9998 -7.3767 -5.5323 19 1 3.6325 -6.8185 -5.3779 20 1 5.2377 -7.7164 -6.9582 21 1 5.1309 -8.6016 -4.7031 22 6 9.3883 -4.6015 -1.5072 23 6 9.0011 -6.0704 -1.3177 24 6 2.0645 -0.7673 -1.2235 25 1 -0.3633 -1.0271 0.0375 26 1 -0.3633 0.5460 0.8706 27 1 -0.3633 0.4810 -0.9082 28 1 2.3790 -0.0824 2.0108 29 1 1.3172 -1.4697 1.6017 30 1 3.5046 -2.4193 1.2491 31 1 4.1563 -0.8823 0.5933 32 1 4.5395 -1.3115 -1.7690 33 1 3.6150 -2.6307 -2.5261 34 1 6.2165 -3.3237 -2.4018 35 1 6.2642 -5.5232 -0.5914 36 1 7.2904 -4.2064 0.0262 37 1 7.9827 -4.5419 -3.8872 38 1 6.4591 -5.2704 -6.7653 39 1 10.0403 -4.3569 -2.3458 40 1 9.5296 -3.9987 -0.6102 41 1 8.8877 -6.4330 -0.2961 42 1 9.3979 -6.7921 -2.0316 43 1 2.7162 -0.1209 -1.8115 44 1 1.2348 -1.1159 -1.8384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499351765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = 7.829194 kcal Electronic energy + Delta-G solvation = -22553.912399 eV Core-core repulsion = 19314.303351 eV Total energy + Delta-G solvation = -3239.609048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83709 -38.42474 -37.32900 -33.57646 -33.29826 -33.12055 -29.84493 -29.69581 -28.06394 -26.07195 -24.40803 -23.91921 -21.87519 -21.36116 -20.12575 -19.84962 -19.05718 -17.15963 -16.82242 -16.18270 -15.74562 -15.32219 -14.98023 -14.53806 -14.14344 -13.84923 -13.75980 -13.61202 -13.31006 -13.11066 -12.92590 -12.71528 -12.23472 -11.93296 -11.89424 -11.61361 -11.26594 -11.01327 -10.94760 -10.93537 -10.92558 -10.77751 -10.62698 -10.31861 -10.26729 -9.78433 -9.35963 -9.20893 -8.89382 -8.42275 -8.26120 -7.14388 -5.88773 -3.19867 3.09363 3.39153 3.45658 3.46597 3.53684 4.18364 4.40062 4.54062 4.58046 4.68156 4.77991 5.20404 5.23158 5.29332 5.30543 5.34026 5.37831 5.44957 5.46599 5.48571 5.55570 5.67707 5.68152 5.82439 5.87808 5.90315 5.95767 6.06984 6.10911 6.20581 6.23253 6.33592 6.39302 6.44083 6.60051 6.76376 6.96775 7.01299 7.08873 7.67673 8.13257 8.28867 8.76230 9.41007 9.92083 10.28034 11.32722 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.004475 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.503502 B = 6255.435685 C = 7470.890498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.071 0.929 4 C -0.122 4.122 5 C 0.032 3.968 6 N -0.499 5.499 7 C 0.027 3.973 8 C 0.512 3.488 9 O -0.546 6.546 10 N -0.699 5.699 11 C 0.154 3.846 12 C 0.128 3.872 13 N -0.689 5.689 14 C -0.235 4.235 15 H 0.071 0.929 16 C -0.008 4.008 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.186 4.186 23 C -0.192 4.192 24 C 0.037 3.963 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.043 0.957 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 10.905 10.491 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.160 4.160 5 C -0.095 4.095 6 N -0.223 5.223 7 C -0.104 4.104 8 C 0.297 3.703 9 O -0.425 6.425 10 N -0.350 5.350 11 C 0.028 3.972 12 C 0.034 3.966 13 N -0.329 5.329 14 C -0.365 4.365 15 H 0.089 0.911 16 C -0.204 4.204 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.224 4.224 23 C -0.232 4.232 24 C -0.091 4.091 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.245 0.755 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.061 0.939 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.533 9.986 11.185 15.982 hybrid contribution 0.199 0.321 -1.316 1.369 sum -5.334 10.307 9.869 15.234 Atomic orbital electron populations 1.21822 0.94467 1.02201 1.01310 1.21991 0.96380 0.98819 0.95099 0.91045 1.22637 0.98152 0.98541 0.96657 1.23511 0.95115 1.00091 0.90770 1.64654 1.19751 1.35723 1.02191 1.22223 0.92044 0.97991 0.98157 1.20290 0.81174 0.82873 0.85942 1.90574 1.72610 1.58629 1.20696 1.45741 1.23451 1.43436 1.22408 1.21028 0.91243 0.91538 0.93432 1.20222 0.87367 1.01478 0.87493 1.41804 1.49893 1.41181 1.00023 1.19146 1.15554 1.08559 0.93277 0.91076 1.24719 1.00281 0.99219 0.96159 1.69645 1.46660 1.38254 1.03427 0.86208 0.81353 0.81083 0.77694 1.21556 1.21775 1.20672 1.23190 0.98787 0.97999 1.02431 1.23367 1.06054 0.92444 1.01361 1.23042 0.98241 0.91052 0.96783 0.92082 0.92831 0.92790 0.91493 0.90673 0.86910 0.94769 0.92174 0.87458 0.75469 0.91597 0.92604 0.77689 0.93386 0.89110 0.89447 0.89909 0.88694 0.93874 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.90 37.16 0.33 -0.89 16 2 C -0.10 -1.04 3.59 -89.26 -0.32 -1.36 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -1.34 6.61 -24.87 -0.16 -1.50 16 5 C 0.03 0.45 5.30 -1.90 -0.01 0.44 16 6 N -0.50 -7.27 5.26 -231.89 -1.22 -8.49 16 7 C 0.03 0.41 5.52 -4.97 -0.03 0.38 16 8 C 0.51 9.11 7.54 -10.99 -0.08 9.02 16 9 O -0.55 -10.98 13.51 5.56 0.08 -10.90 16 10 N -0.70 -12.53 5.39 -60.30 -0.33 -12.86 16 11 C 0.15 2.80 5.69 -4.04 -0.02 2.78 16 12 C 0.13 2.41 2.46 -131.81 -0.32 2.08 16 13 N -0.69 -15.76 4.49 -47.23 -0.21 -15.97 16 14 C -0.23 -6.10 9.81 -15.06 -0.15 -6.25 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 18 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.19 -2.95 10.11 -26.69 -0.27 -3.22 16 23 C -0.19 -3.28 10.18 -26.69 -0.27 -3.55 16 24 C 0.04 0.43 6.35 -2.76 -0.02 0.41 16 25 H 0.06 0.58 8.11 -51.92 -0.42 0.16 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16 30 H 0.11 1.84 5.97 -51.93 -0.31 1.53 16 31 H 0.03 0.46 8.02 -51.93 -0.42 0.05 16 32 H 0.06 0.78 7.81 -51.93 -0.41 0.38 16 33 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.41 7.44 7.79 -40.82 -0.32 7.12 16 35 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 36 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 37 H 0.39 9.41 8.03 -40.82 -0.33 9.08 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 43 H 0.04 0.47 7.57 -51.93 -0.39 0.08 16 44 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -28.98 354.34 -9.64 -38.62 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -7.58 Total: 14.94 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.42 Total: -1.97 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -1.03 Total: -62.93 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.98 -9.64 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499351765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.447 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds