Wall clock time and date at job start Tue Mar 31 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46647 * 2 1 4 4 H 1.09003 * 109.47506 * 304.99694 * 3 2 1 5 5 C 1.50706 * 109.46657 * 184.99766 * 3 2 1 6 6 H 1.08000 * 120.00100 * 239.99415 * 5 3 2 7 7 C 1.37879 * 119.99950 * 60.00465 * 5 3 2 8 8 N 1.31510 * 120.00029 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99739 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47087 * 60.00171 * 9 7 5 11 11 H 1.48508 * 109.46968 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47586 * 299.99550 * 9 7 5 13 13 N 1.46499 * 109.47495 * 65.00260 * 3 2 1 14 14 C 1.34784 * 119.99591 * 274.99877 * 13 3 2 15 15 O 1.21276 * 119.99898 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99827 * 180.27478 * 14 13 3 17 17 H 1.09001 * 109.57808 * 295.93555 * 16 14 13 18 18 C 1.53229 * 109.58284 * 56.21135 * 16 14 13 19 19 N 1.47262 * 108.80432 * 119.80356 * 18 16 14 20 20 C 1.47321 * 110.15874 * 60.80358 * 19 18 16 21 21 C 1.53200 * 108.80245 * 299.19184 * 20 19 18 22 22 N 1.47274 * 109.58086 * 175.66717 * 16 14 13 23 23 C 1.47304 * 110.15717 * 301.00792 * 22 16 14 24 24 C 1.47315 * 110.15876 * 299.18258 * 19 18 16 25 25 H 1.08997 * 109.58632 * 180.60469 * 24 19 18 26 26 C 1.52997 * 109.58178 * 301.01232 * 24 19 18 27 27 H 1.08992 * 109.47536 * 300.00158 * 1 2 3 28 28 H 1.09003 * 109.47228 * 60.00821 * 1 2 3 29 29 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47093 * 240.00033 * 2 1 3 31 31 H 1.09001 * 109.46708 * 119.99726 * 2 1 3 32 32 H 0.97004 * 120.00396 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00529 * 94.99289 * 13 3 2 34 34 H 1.09002 * 109.58295 * 239.60252 * 18 16 14 35 35 H 1.09002 * 109.58325 * 0.02562 * 18 16 14 36 36 H 1.09004 * 109.57964 * 58.98593 * 20 19 18 37 37 H 1.09002 * 109.58037 * 179.38698 * 20 19 18 38 38 H 1.08999 * 109.58466 * 119.79806 * 21 20 19 39 39 H 1.09006 * 109.57879 * 240.06980 * 21 20 19 40 40 H 1.09003 * 109.58517 * 58.98551 * 23 22 16 41 41 H 1.09000 * 109.58150 * 179.25417 * 23 22 16 42 42 H 1.09006 * 109.47076 * 59.99816 * 26 24 19 43 43 H 1.09001 * 109.47212 * 179.97438 * 26 24 19 44 44 H 1.09002 * 109.47349 * 300.00001 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4063 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3817 10 1 6.5974 0.1473 -0.2348 11 1 6.3979 0.2168 -2.6503 12 1 6.4995 2.2815 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3394 2.6326 0.4341 16 6 0.0386 3.3436 2.6525 17 1 0.0012 2.6093 3.4571 18 6 1.0627 4.4304 2.9960 19 7 0.3747 5.7314 3.0483 20 6 -0.6666 5.7136 4.0902 21 6 -1.6905 4.6270 3.7466 22 7 -1.2854 3.9685 2.4927 23 6 -1.2538 4.9513 1.3958 24 6 -0.2252 6.0414 1.7390 25 1 -0.7224 7.0103 1.7851 26 6 0.8676 6.0732 0.6688 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0617 -2.9495 33 1 2.2718 2.1232 1.9978 34 1 1.5120 4.2156 3.9656 35 1 1.8375 4.4577 2.2298 36 1 -0.2125 5.4951 5.0568 37 1 -1.1621 6.6837 4.1282 38 1 -1.7248 3.8903 4.5492 39 1 -2.6748 5.0786 3.6228 40 1 -0.9634 4.4556 0.4694 41 1 -2.2409 5.3981 1.2771 42 1 1.3583 5.1009 0.6215 43 1 0.4218 6.3022 -0.2991 44 1 1.6015 6.8385 0.9214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519878949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:51 Heat of formation + Delta-G solvation = -5.817218 kcal Electronic energy + Delta-G solvation = -24274.432340 eV Core-core repulsion = 21034.231539 eV Total energy + Delta-G solvation = -3240.200801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44676 -38.48855 -35.07994 -33.50357 -32.71886 -32.14290 -31.63480 -30.34119 -27.24697 -26.74680 -24.28821 -23.72736 -22.90626 -21.99933 -20.42761 -19.35493 -18.17132 -17.46144 -16.80393 -16.21383 -15.97533 -15.24393 -14.87921 -14.53842 -14.07524 -13.73638 -13.37863 -13.16177 -13.01757 -12.96540 -12.63662 -12.45962 -12.26529 -11.76693 -11.72498 -11.41898 -11.32828 -11.21834 -11.02825 -10.92940 -10.80991 -10.58624 -10.47380 -10.25208 -10.16198 -9.77598 -9.59868 -9.06506 -8.82359 -8.49912 -7.83892 -7.58510 -6.12864 -4.22509 3.24769 3.30437 3.30830 3.36690 3.59221 3.91769 4.26267 4.37655 4.62133 4.80832 4.85883 4.90045 5.18432 5.19580 5.36792 5.39636 5.45274 5.47608 5.55163 5.59883 5.73965 5.79377 5.86356 5.96133 6.12189 6.24463 6.37129 6.41373 6.48618 6.64460 6.68726 6.73878 7.05679 7.10602 7.18952 7.22705 7.37990 7.46369 7.62038 7.73839 7.89859 8.18194 8.66431 8.77693 9.14244 9.45156 10.92231 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023749 B = 0.005369 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.690585 B = 5214.348832 C = 5740.979308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.274 3.726 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.512 3.488 15 O -0.529 6.529 16 C 0.020 3.980 17 H 0.104 0.896 18 C 0.014 3.986 19 N -0.510 5.510 20 C 0.010 3.990 21 C 0.010 3.990 22 N -0.490 5.490 23 C 0.000 4.000 24 C 0.037 3.963 25 H 0.082 0.918 26 C -0.143 4.143 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 8.879 11.163 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.295 3.705 15 O -0.407 6.407 16 C -0.094 4.094 17 H 0.122 0.878 18 C -0.117 4.117 19 N -0.232 5.232 20 C -0.120 4.120 21 C -0.121 4.121 22 N -0.211 5.211 23 C -0.129 4.129 24 C -0.073 4.073 25 H 0.100 0.900 26 C -0.201 4.201 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.852 8.735 10.265 15.120 hybrid contribution 1.240 -0.085 0.428 1.315 sum -5.612 8.650 10.693 14.855 Atomic orbital electron populations 1.21830 0.98247 0.97995 1.01295 1.21939 0.92655 0.99868 1.02200 1.18749 0.94070 0.89113 0.80827 0.93394 1.21187 0.90720 1.39142 1.06251 0.92192 1.24869 0.98497 0.94797 0.95398 1.69882 1.35200 1.37475 1.09349 0.86541 0.84984 0.78309 0.77457 1.20182 1.21151 1.20196 1.46492 1.14399 1.56196 1.18554 1.19910 0.82693 0.79508 0.88341 1.90594 1.50979 1.58948 1.40179 1.22461 0.90662 0.97646 0.98671 0.87831 1.23018 0.97028 0.87890 1.03736 1.63938 1.25812 1.28457 1.04971 1.22910 0.93404 0.99808 0.95892 1.22943 0.99144 0.96899 0.93076 1.63659 1.24137 1.29057 1.04200 1.23476 0.99047 0.92715 0.97656 1.22573 0.96085 0.99102 0.89504 0.89984 1.21887 0.98118 1.02887 0.97209 0.94150 0.93223 0.95986 0.88361 0.95120 0.92515 0.78126 0.89737 0.88538 0.90248 0.90346 0.90367 0.90104 0.86252 0.90888 0.91727 0.91870 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -13.97 4.65 -54.93 -0.26 -14.22 16 14 C 0.51 9.67 4.40 -10.98 -0.05 9.62 16 15 O -0.53 -11.76 11.07 5.56 0.06 -11.70 16 16 C 0.02 0.29 2.87 -68.54 -0.20 0.10 16 17 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 18 C 0.01 0.18 5.16 -3.51 -0.02 0.16 16 19 N -0.51 -6.52 5.24 -224.91 -1.18 -7.70 16 20 C 0.01 0.10 6.13 -3.49 -0.02 0.08 16 21 C 0.01 0.11 6.12 -3.50 -0.02 0.09 16 22 N -0.49 -7.24 5.04 -226.28 -1.14 -8.38 16 23 C 0.00 0.00 5.38 -3.21 -0.02 -0.01 16 24 C 0.04 0.50 3.05 -67.09 -0.20 0.29 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.14 -2.04 8.65 37.16 0.32 -1.72 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.59 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.44 5.40 -51.93 -0.28 1.16 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.12 2.18 4.83 -51.93 -0.25 1.93 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.09 5.53 -51.93 -0.29 0.80 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -28.71 324.99 -9.77 -38.48 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.18 Total: 10.21 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.59 Total: -3.17 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -1.95 Total: -54.03 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.06 Total: -11.70 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.71 -9.77 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519878949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.665 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds