Wall clock time and date at job start Tue Mar 31 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 H 1.09001 * 109.46890 * 304.99880 * 3 2 1 5 5 C 1.50696 * 109.47268 * 184.99756 * 3 2 1 6 6 H 1.08004 * 120.00246 * 239.99971 * 5 3 2 7 7 C 1.37875 * 119.99908 * 59.99696 * 5 3 2 8 8 N 1.31518 * 120.00009 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00025 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46798 * 60.00138 * 9 7 5 11 11 H 1.48492 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48488 * 109.46958 * 300.00255 * 9 7 5 13 13 N 1.46501 * 109.47299 * 64.99456 * 3 2 1 14 14 C 1.34775 * 120.00098 * 275.00360 * 13 3 2 15 15 O 1.21274 * 120.00053 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99907 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.58159 * 63.16721 * 16 14 13 18 18 C 1.53210 * 109.69190 * 302.82780 * 16 14 13 19 19 N 1.47315 * 108.91346 * 240.20878 * 18 16 14 20 20 C 1.47312 * 109.96768 * 299.00663 * 19 18 16 21 21 C 1.53752 * 108.72733 * 60.91775 * 20 19 18 22 22 N 1.47309 * 108.76830 * 359.89509 * 21 20 19 23 23 C 1.47273 * 110.15549 * 60.87174 * 22 21 20 24 24 C 1.47274 * 110.15817 * 60.60215 * 19 18 16 25 25 H 1.09000 * 109.58014 * 59.25670 * 24 19 18 26 26 C 1.52996 * 109.58254 * 179.52650 * 24 19 18 27 27 H 1.08997 * 109.47577 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47135 * 300.00573 * 1 2 3 29 29 H 1.09005 * 109.46776 * 60.00346 * 1 2 3 30 30 H 1.08998 * 109.47135 * 239.99427 * 2 1 3 31 31 H 1.09005 * 109.46776 * 119.99654 * 2 1 3 32 32 H 0.96997 * 119.99722 * 180.02562 * 8 7 5 33 33 H 0.97004 * 119.99971 * 94.99738 * 13 3 2 34 34 H 1.08997 * 109.58106 * 359.93484 * 18 16 14 35 35 H 1.09000 * 109.58334 * 120.21213 * 18 16 14 36 36 H 1.08994 * 109.58471 * 180.58069 * 20 19 18 37 37 H 1.09004 * 109.58145 * 300.85042 * 20 19 18 38 38 H 1.09001 * 109.54605 * 240.14344 * 21 20 19 39 39 H 1.09002 * 109.65345 * 119.71125 * 21 20 19 40 40 H 1.09007 * 109.57994 * 179.38734 * 23 22 21 41 41 H 1.08999 * 109.69321 * 59.05031 * 23 22 21 42 42 H 1.09002 * 109.47175 * 179.72758 * 26 24 19 43 43 H 1.08999 * 109.47248 * 299.72761 * 26 24 19 44 44 H 1.08998 * 109.47172 * 59.72843 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0051 0.8799 -1.3809 10 1 6.5966 0.1451 -0.2340 11 1 6.3979 0.2155 -2.6495 12 1 6.5005 2.2797 -1.3806 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3392 2.6327 0.4340 16 6 0.0366 3.3388 2.6543 17 1 0.6925 4.1895 2.8394 18 6 0.1468 2.3436 3.8140 19 7 -1.1791 2.1875 4.4368 20 6 -1.6411 3.4817 4.9676 21 6 -1.7534 4.4806 3.8042 22 7 -1.3583 3.8027 2.5575 23 6 -2.2544 2.6643 2.2930 24 6 -2.1442 1.6689 3.4527 25 1 -1.8000 0.7057 3.0760 26 6 -3.5126 1.5008 4.1159 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8294 -0.0612 -2.9497 33 1 2.2719 2.1232 1.9978 34 1 0.4868 1.3792 3.4367 35 1 0.8569 2.7186 4.5510 36 1 -2.6174 3.3569 5.4358 37 1 -0.9271 3.8503 5.7042 38 1 -1.0912 5.3273 3.9853 39 1 -2.7823 4.8305 3.7195 40 1 -1.9606 2.1764 1.3635 41 1 -3.2824 3.0174 2.2110 42 1 -4.2266 1.1215 3.3848 43 1 -3.4312 0.7962 4.9435 44 1 -3.8551 2.4648 4.4919 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519878951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:53 Heat of formation + Delta-G solvation = -6.270218 kcal Electronic energy + Delta-G solvation = -24169.179990 eV Core-core repulsion = 20928.959545 eV Total energy + Delta-G solvation = -3240.220445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44123 -38.54248 -35.10067 -33.53060 -32.84947 -32.07058 -31.42329 -30.56205 -27.55618 -26.66006 -24.00815 -23.81949 -22.96639 -22.24044 -20.39326 -19.32875 -18.13526 -17.48064 -16.93801 -16.34414 -15.89660 -15.23732 -14.86645 -14.59363 -14.22768 -13.73907 -13.41188 -13.12252 -12.96416 -12.78578 -12.66309 -12.61683 -12.37500 -12.13293 -11.80296 -11.53197 -11.26533 -11.22028 -11.01951 -10.98556 -10.82778 -10.60262 -10.50005 -10.32807 -10.13247 -9.79310 -9.64271 -9.06514 -8.83399 -8.49084 -7.82718 -7.61746 -6.12701 -4.22171 3.25186 3.30768 3.31449 3.36384 3.58003 3.89639 4.25650 4.38408 4.60272 4.78987 4.79585 4.89828 5.14153 5.18966 5.22705 5.36218 5.42494 5.44998 5.55177 5.59544 5.70759 5.74264 5.77598 5.81966 5.97677 6.07441 6.24171 6.36408 6.42663 6.58867 6.63201 6.73490 7.01147 7.09723 7.16443 7.19739 7.35185 7.45304 7.61363 7.73051 7.89969 8.17481 8.66602 8.77878 9.14227 9.45395 10.92557 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.004726 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.320435 B = 5923.201177 C = 6235.051224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.530 6.530 16 C 0.020 3.980 17 H 0.106 0.894 18 C 0.019 3.981 19 N -0.509 5.509 20 C 0.005 3.995 21 C 0.011 3.989 22 N -0.490 5.490 23 C 0.003 3.997 24 C 0.034 3.966 25 H 0.087 0.913 26 C -0.139 4.139 27 H 0.022 0.978 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 4.040 13.695 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.295 3.705 15 O -0.408 6.408 16 C -0.094 4.094 17 H 0.123 0.877 18 C -0.112 4.112 19 N -0.230 5.230 20 C -0.125 4.125 21 C -0.119 4.119 22 N -0.211 5.211 23 C -0.127 4.127 24 C -0.077 4.077 25 H 0.105 0.895 26 C -0.197 4.197 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.829 3.901 12.791 16.596 hybrid contribution 1.381 0.059 0.321 1.419 sum -8.447 3.961 13.112 16.092 Atomic orbital electron populations 1.21846 0.98468 0.97977 1.01062 1.21928 0.92505 0.99866 1.02246 1.18761 0.94145 0.89060 0.80929 0.93347 1.21189 0.90729 1.39097 1.06290 0.92185 1.24875 0.98550 0.94798 0.95369 1.69882 1.35210 1.37533 1.09333 0.86524 0.84924 0.78305 0.77446 1.20178 1.21143 1.20200 1.46476 1.14463 1.56034 1.18560 1.19928 0.82971 0.79256 0.88377 1.90591 1.50927 1.59285 1.40010 1.22476 0.92460 0.99215 0.95291 0.87657 1.22943 0.92000 1.00522 0.95727 1.63980 1.02189 1.24219 1.32613 1.23065 1.02130 0.89785 0.97534 1.23023 1.02277 0.97325 0.89270 1.63605 1.00762 1.25412 1.31335 1.23350 0.97303 0.91479 1.00538 1.22493 0.93321 0.99362 0.92479 0.89509 1.21872 0.95199 1.01761 1.00828 0.95896 0.94477 0.93127 0.88310 0.95111 0.92513 0.78099 0.89249 0.89532 0.89933 0.90322 0.90339 0.90147 0.86480 0.90662 0.91953 0.92102 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.52 37.16 0.32 -2.63 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.69 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.87 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.71 -14.10 4.69 -54.93 -0.26 -14.35 16 14 C 0.51 9.77 5.17 -10.98 -0.06 9.72 16 15 O -0.53 -11.94 11.06 5.56 0.06 -11.87 16 16 C 0.02 0.29 2.86 -68.53 -0.20 0.10 16 17 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 18 C 0.02 0.24 5.54 -3.49 -0.02 0.22 16 19 N -0.51 -6.33 5.25 -224.89 -1.18 -7.51 16 20 C 0.00 0.05 5.77 -3.21 -0.02 0.03 16 21 C 0.01 0.13 6.16 -3.21 -0.02 0.11 16 22 N -0.49 -7.23 5.03 -226.27 -1.14 -8.37 16 23 C 0.00 0.04 5.36 -3.50 -0.02 0.02 16 24 C 0.03 0.43 3.04 -67.39 -0.20 0.23 16 25 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 26 C -0.14 -1.43 8.64 37.16 0.32 -1.11 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.77 5.49 -51.93 -0.28 0.48 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.39 6.75 8.35 -40.82 -0.34 6.41 16 34 H 0.09 1.30 7.40 -51.93 -0.38 0.91 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.77 6.17 -51.93 -0.32 0.45 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.12 2.12 5.19 -51.93 -0.27 1.85 16 41 H 0.07 1.01 7.61 -51.93 -0.40 0.62 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.52 6.30 -51.93 -0.33 0.20 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -29.03 326.29 -9.79 -38.82 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.20 Total: 9.25 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.59 Total: -2.42 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -1.95 Total: -54.10 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.06 Total: -11.87 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.03 -9.79 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519878951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.548 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds