Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.50704 * 109.46914 * 240.00148 * 2 1 3 5 5 H 1.08001 * 119.99726 * 239.99763 * 4 2 1 6 6 C 1.37875 * 120.00146 * 60.00417 * 4 2 1 7 7 N 1.31513 * 120.00266 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99889 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47172 * 59.99557 * 8 6 4 10 10 H 1.48499 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47224 * 299.99403 * 8 6 4 12 12 N 1.46497 * 109.47164 * 119.99816 * 2 1 3 13 13 C 1.46499 * 119.99850 * 60.00325 * 12 2 1 14 14 C 1.34773 * 120.00059 * 240.00124 * 12 2 1 15 15 O 1.21281 * 120.00037 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99878 * 180.02562 * 14 12 2 17 17 H 1.08999 * 109.69129 * 306.62113 * 16 14 12 18 18 C 1.53208 * 109.58126 * 66.96696 * 16 14 12 19 19 N 1.47307 * 108.80360 * 119.79244 * 18 16 14 20 20 C 1.47313 * 110.07867 * 60.85783 * 19 18 16 21 21 C 1.53208 * 108.80284 * 299.14264 * 20 19 18 22 22 N 1.47307 * 108.80368 * 359.97438 * 21 20 19 23 23 C 1.47266 * 110.16036 * 299.19489 * 22 21 20 24 24 C 1.47265 * 110.15621 * 299.18566 * 19 18 16 25 25 H 1.08995 * 109.58783 * 300.88420 * 24 19 18 26 26 C 1.53009 * 109.58376 * 180.61028 * 24 19 18 27 27 H 1.08999 * 109.47314 * 300.00321 * 1 2 3 28 28 H 1.09000 * 109.47214 * 60.00081 * 1 2 3 29 29 H 1.09002 * 109.47159 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00183 * 180.02562 * 7 6 4 31 31 H 1.09007 * 109.46852 * 269.99997 * 13 12 2 32 32 H 1.08996 * 109.47334 * 29.99577 * 13 12 2 33 33 H 1.09000 * 109.47031 * 149.99952 * 13 12 2 34 34 H 1.08997 * 109.58037 * 359.97438 * 18 16 14 35 35 H 1.09010 * 109.57572 * 239.58693 * 18 16 14 36 36 H 1.09002 * 109.58478 * 58.94285 * 20 19 18 37 37 H 1.09003 * 109.58297 * 179.34506 * 20 19 18 38 38 H 1.09003 * 109.57737 * 119.79596 * 21 20 19 39 39 H 1.09003 * 109.58049 * 240.06036 * 21 20 19 40 40 H 1.09000 * 109.58129 * 301.01753 * 23 22 21 41 41 H 1.09000 * 109.58591 * 180.61006 * 23 22 21 42 42 H 1.08996 * 109.46760 * 60.00373 * 26 24 19 43 43 H 1.08999 * 109.46900 * 180.02562 * 26 24 19 44 44 H 1.08998 * 109.46990 * 300.00423 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.8280 -2.5198 -4.0082 10 1 1.8270 -0.4198 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7931 -0.0356 2.0833 15 8 3.0865 1.1255 1.8911 16 6 3.2960 -0.7461 3.3135 17 1 2.4575 -1.1920 3.8486 18 6 4.2858 -1.8419 2.9050 19 7 5.5900 -1.5604 3.5292 20 6 5.4593 -1.5616 4.9965 21 6 4.4695 -0.4658 5.4050 22 7 3.9872 0.2150 4.1910 23 6 5.1146 0.8363 3.4756 24 6 6.1039 -0.2601 3.0665 25 1 6.2093 -0.2740 1.9818 26 6 7.4648 0.0121 3.7106 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7083 1.1609 -3.4845 31 1 0.7375 -2.1443 1.9993 32 1 1.5295 -2.5968 0.4708 33 1 2.4629 -2.5818 1.9863 34 1 4.3937 -1.8508 1.8205 35 1 3.9193 -2.8105 3.2454 36 1 5.0889 -2.5311 5.3295 37 1 6.4306 -1.3641 5.4500 38 1 3.6270 -0.9129 5.9328 39 1 4.9681 0.2529 6.0554 40 1 5.6121 1.5524 4.1296 41 1 4.7461 1.3461 2.5855 42 1 8.1641 -0.7750 3.4285 43 1 7.8432 0.9749 3.3673 44 1 7.3565 0.0303 4.7950 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527658216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = 11.509315 kcal Electronic energy + Delta-G solvation = -24227.751470 eV Core-core repulsion = 20988.302004 eV Total energy + Delta-G solvation = -3239.449466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46331 -38.57941 -35.42109 -33.58308 -33.08372 -32.15394 -31.30027 -29.27741 -27.14912 -26.17934 -25.23283 -23.91627 -23.73979 -22.38215 -20.94624 -18.69082 -17.91248 -17.20568 -16.88112 -16.29100 -15.96499 -15.40467 -14.79709 -14.50261 -14.15630 -13.69600 -13.33556 -13.11001 -13.00712 -12.82727 -12.67943 -12.41530 -12.34743 -12.11622 -11.94660 -11.59464 -11.37711 -11.28642 -11.04959 -10.94530 -10.86080 -10.71954 -10.54798 -10.43747 -10.18340 -10.15842 -9.74668 -9.20365 -8.74618 -8.42918 -7.66691 -7.51427 -6.08250 -4.16691 3.26661 3.29614 3.32416 3.35220 3.58206 3.84866 4.28490 4.38647 4.63738 4.79807 4.84008 4.90027 5.11955 5.22623 5.26931 5.28495 5.40883 5.46239 5.54563 5.58209 5.68464 5.74825 5.77141 5.83512 5.87153 6.01626 6.04659 6.13114 6.33988 6.36825 6.61829 6.75786 6.80490 6.84379 7.05890 7.15730 7.22076 7.43021 7.53546 7.70855 8.00855 8.18651 8.51244 8.81761 9.04996 9.49908 10.96882 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.005251 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.911900 B = 5331.441305 C = 5662.563837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.076 3.924 14 C 0.515 3.485 15 O -0.536 6.536 16 C 0.024 3.976 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.510 5.510 20 C 0.006 3.994 21 C 0.011 3.989 22 N -0.494 5.494 23 C -0.005 4.005 24 C 0.034 3.966 25 H 0.088 0.912 26 C -0.138 4.138 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -6.088 13.954 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.320 5.320 13 C -0.068 4.068 14 C 0.301 3.699 15 O -0.414 6.414 16 C -0.090 4.090 17 H 0.121 0.879 18 C -0.107 4.107 19 N -0.232 5.232 20 C -0.124 4.124 21 C -0.119 4.119 22 N -0.215 5.215 23 C -0.134 4.134 24 C -0.076 4.076 25 H 0.106 0.894 26 C -0.196 4.196 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.146 0.854 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.972 -5.345 13.673 16.252 hybrid contribution 0.164 -0.682 -0.780 1.048 sum 7.135 -6.026 12.894 15.921 Atomic orbital electron populations 1.22077 0.98188 0.99377 1.00790 1.18930 0.90879 0.94463 0.79752 0.91946 1.21263 1.31951 1.13026 0.90287 0.92336 1.24883 0.94919 0.94958 0.98934 1.69868 1.36191 1.22553 1.23880 0.86565 0.79236 0.79586 0.82051 1.20229 1.21162 1.20260 1.48186 1.48844 1.11585 1.23424 1.21759 0.98978 0.83456 1.02594 1.19985 0.79409 0.86961 0.83587 1.90487 1.57460 1.16992 1.76482 1.22422 0.98237 0.93600 0.94754 0.87912 1.22958 0.88519 0.97800 1.01472 1.63962 1.23656 1.30000 1.05580 1.22957 1.00504 0.99598 0.89369 1.22919 0.98708 0.96802 0.93499 1.63645 1.24980 1.27713 1.05130 1.23550 0.90655 0.96679 1.02527 1.22492 0.95245 0.88923 1.00929 0.89395 1.21871 0.95888 1.01615 1.00209 0.97025 0.88863 0.95185 0.92610 0.93878 0.89926 0.92496 0.89095 0.89504 0.90418 0.89902 0.90446 0.90179 0.90827 0.85391 0.92148 0.91951 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.56 2.64 -69.08 -0.18 6.38 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -13.99 7.99 -34.44 -0.28 -14.26 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.59 -12.32 2.75 -175.26 -0.48 -12.80 16 13 C 0.08 1.25 8.94 59.85 0.54 1.78 16 14 C 0.51 10.56 6.51 -10.98 -0.07 10.48 16 15 O -0.54 -12.96 12.80 5.56 0.07 -12.89 16 16 C 0.02 0.37 2.05 -68.50 -0.14 0.23 16 17 H 0.10 1.46 7.92 -51.93 -0.41 1.05 16 18 C 0.02 0.32 3.99 -3.49 -0.01 0.31 16 19 N -0.51 -6.81 5.24 -225.24 -1.18 -7.99 16 20 C 0.01 0.06 5.75 -3.49 -0.02 0.04 16 21 C 0.01 0.13 6.13 -3.49 -0.02 0.10 16 22 N -0.49 -7.63 5.10 -226.59 -1.16 -8.79 16 23 C -0.01 -0.08 5.37 -3.50 -0.02 -0.10 16 24 C 0.03 0.48 3.05 -67.39 -0.21 0.27 16 25 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 26 C -0.14 -1.53 8.63 37.16 0.32 -1.21 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 33 H 0.06 0.76 4.50 -51.93 -0.23 0.53 16 34 H 0.09 1.48 7.26 -51.93 -0.38 1.11 16 35 H 0.09 1.02 7.55 -51.92 -0.39 0.63 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.81 6.18 -51.93 -0.32 0.49 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.05 7.61 -51.93 -0.40 0.65 16 41 H 0.13 2.51 4.99 -51.93 -0.26 2.25 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.55 6.32 -51.93 -0.33 0.22 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -30.11 324.16 -9.17 -39.27 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.05 Total: 4.23 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 0.15 Total: 2.55 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -2.19 Total: -53.91 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.11 -9.17 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527658216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.782 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds