Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46882 * 2 1 4 4 C 1.50701 * 109.47237 * 119.99797 * 2 1 3 5 5 H 1.07998 * 119.99909 * 114.49915 * 4 2 1 6 6 C 1.37878 * 119.99870 * 294.50655 * 4 2 1 7 7 N 1.31517 * 119.99407 * 155.42949 * 6 4 2 8 8 Si 1.86791 * 120.00132 * 335.42365 * 6 4 2 9 9 H 1.48506 * 109.47328 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47126 * 300.00120 * 8 6 4 11 11 H 1.48499 * 109.47290 * 60.00166 * 8 6 4 12 12 N 1.46499 * 109.47254 * 240.00432 * 2 1 3 13 13 C 1.46501 * 119.99655 * 299.99737 * 12 2 1 14 14 C 1.34776 * 120.00075 * 119.99902 * 12 2 1 15 15 O 1.21277 * 120.00013 * 359.97438 * 14 12 2 16 16 C 1.50698 * 119.99761 * 179.97438 * 14 12 2 17 17 H 1.09009 * 109.58373 * 299.63527 * 16 14 12 18 18 C 1.53231 * 109.58290 * 60.04388 * 16 14 12 19 19 N 1.47269 * 108.80109 * 119.80792 * 18 16 14 20 20 C 1.47312 * 110.15937 * 299.18148 * 19 18 16 21 21 C 1.53201 * 108.80204 * 60.80589 * 20 19 18 22 22 N 1.47269 * 109.58184 * 179.36456 * 16 14 12 23 23 C 1.47317 * 110.15909 * 179.38486 * 22 16 14 24 24 C 1.47311 * 110.16039 * 60.80699 * 19 18 16 25 25 H 1.08998 * 109.58618 * 179.25338 * 24 19 18 26 26 C 1.53005 * 109.58589 * 58.97379 * 24 19 18 27 27 H 1.09008 * 109.47309 * 53.59232 * 1 2 3 28 28 H 1.08996 * 109.47225 * 173.58974 * 1 2 3 29 29 H 1.09004 * 109.47501 * 293.59429 * 1 2 3 30 30 H 0.96999 * 120.00450 * 354.93565 * 7 6 4 31 31 H 1.08997 * 109.47081 * 90.00259 * 13 12 2 32 32 H 1.09008 * 109.46791 * 210.00217 * 13 12 2 33 33 H 1.09004 * 109.47285 * 330.00009 * 13 12 2 34 34 H 1.09004 * 109.58027 * 239.60211 * 18 16 14 35 35 H 1.08995 * 109.58221 * 0.02562 * 18 16 14 36 36 H 1.09002 * 109.58326 * 301.01382 * 20 19 18 37 37 H 1.09001 * 109.58299 * 180.60212 * 20 19 18 38 38 H 1.08999 * 109.58484 * 240.21646 * 21 20 19 39 39 H 1.09006 * 109.58450 * 119.80811 * 21 20 19 40 40 H 1.08994 * 109.58383 * 180.60375 * 23 22 16 41 41 H 1.09006 * 109.57742 * 301.01188 * 23 22 16 42 42 H 1.09003 * 109.46805 * 60.00320 * 26 24 19 43 43 H 1.08994 * 109.47270 * 180.02562 * 26 24 19 44 44 H 1.08996 * 109.47189 * 300.00884 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5780 -1.6373 1.1339 6 6 1.7951 -0.1769 2.4796 7 7 1.7773 -0.9597 3.5363 8 14 1.4993 1.6575 2.6709 9 1 1.2714 1.9754 4.1036 10 1 2.6861 2.4040 2.1814 11 1 0.3058 2.0516 1.8801 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 6 2.7932 -0.0354 -2.0833 15 8 3.0857 1.1258 -1.8916 16 6 3.2959 -0.7460 -3.3135 17 1 3.9074 -1.5989 -3.0185 18 6 2.1064 -1.2283 -4.1503 19 7 2.1754 -0.5993 -5.4801 20 6 2.1029 0.8665 -5.3527 21 6 3.2921 1.3489 -4.5159 22 7 4.1019 0.1820 -4.1247 23 6 4.6124 -0.5042 -5.3242 24 6 3.4230 -0.9867 -6.1608 25 1 3.4582 -0.5270 -7.1485 26 6 3.4791 -2.5092 -6.3014 27 1 -0.3634 0.6100 -0.8271 28 1 -0.3633 -1.0212 -0.1147 29 1 -0.3634 0.4113 0.9418 30 1 1.8577 -1.9205 3.4296 31 1 0.7376 -2.1443 -1.9994 32 1 2.4630 -2.5818 -1.9864 33 1 1.5295 -2.5968 -0.4708 34 1 2.1498 -2.3123 -4.2562 35 1 1.1755 -0.9439 -3.6598 36 1 1.1719 1.1448 -4.8588 37 1 2.1440 1.3217 -6.3423 38 1 2.9283 1.8569 -3.6228 39 1 3.9003 2.0342 -5.1063 40 1 5.2158 0.1876 -5.9118 41 1 5.2195 -1.3588 -5.0254 42 1 2.6256 -2.8517 -6.8867 43 1 4.4030 -2.7938 -6.8049 44 1 3.4486 -2.9668 -5.3126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527658217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = 8.994690 kcal Electronic energy + Delta-G solvation = -24294.104242 eV Core-core repulsion = 21054.545734 eV Total energy + Delta-G solvation = -3239.558509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.58960 -38.74257 -35.61504 -33.48045 -33.14038 -32.49384 -31.57066 -29.70317 -27.25290 -26.37648 -24.86820 -24.16256 -23.82004 -22.32071 -20.91437 -18.70110 -18.07543 -17.58688 -17.39901 -16.53065 -16.05408 -15.57859 -14.92245 -14.71141 -13.91638 -13.64750 -13.56304 -13.22686 -13.02229 -12.97558 -12.82334 -12.62719 -12.55444 -12.16242 -11.99055 -11.78041 -11.73672 -11.51178 -11.42603 -11.24607 -11.16598 -10.65126 -10.50564 -10.46913 -10.11442 -9.84893 -9.79799 -9.18143 -8.94236 -8.29891 -7.84715 -7.64099 -6.52644 -4.13915 3.18823 3.39695 3.44359 3.49775 3.63908 3.73903 4.14843 4.47231 4.47800 4.66995 4.69786 4.82274 5.04329 5.08363 5.13781 5.20698 5.26773 5.29918 5.47240 5.54146 5.58087 5.61165 5.66266 5.73470 5.80986 5.85807 5.87005 5.96145 6.17705 6.24287 6.31814 6.41023 6.52977 6.59963 6.65110 6.93358 7.01261 7.10153 7.18682 7.43790 7.84564 8.27722 8.32499 8.75086 8.93251 9.50496 10.82220 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030336 B = 0.005169 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.762174 B = 5415.908748 C = 5708.413636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.238 3.762 3 H 0.053 0.947 4 C -0.619 4.619 5 H 0.062 0.938 6 C 0.045 3.955 7 N -0.891 5.891 8 Si 1.030 2.970 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.083 3.917 14 C 0.514 3.486 15 O -0.536 6.536 16 C 0.026 3.974 17 H 0.106 0.894 18 C 0.019 3.981 19 N -0.511 5.511 20 C 0.011 3.989 21 C -0.006 4.006 22 N -0.492 5.492 23 C 0.015 3.985 24 C 0.034 3.966 25 H 0.086 0.914 26 C -0.142 4.142 27 H 0.024 0.976 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.270 0.730 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 -2.343 -19.511 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.136 3.864 3 H 0.071 0.929 4 C -0.657 4.657 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.524 5.524 8 Si 0.858 3.142 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.316 5.316 13 C -0.061 4.061 14 C 0.300 3.700 15 O -0.414 6.414 16 C -0.088 4.088 17 H 0.124 0.876 18 C -0.112 4.112 19 N -0.232 5.232 20 C -0.119 4.119 21 C -0.135 4.135 22 N -0.213 5.213 23 C -0.115 4.115 24 C -0.076 4.076 25 H 0.104 0.896 26 C -0.200 4.200 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.705 -0.553 -18.235 18.257 hybrid contribution 0.336 -1.448 -1.136 1.871 sum 1.041 -2.001 -19.371 19.502 Atomic orbital electron populations 1.22403 0.98668 1.00105 1.00003 1.19153 0.90276 0.94637 0.82321 0.92885 1.22063 1.41445 1.11291 0.90898 0.92004 1.25607 0.93030 1.05728 0.91860 1.70870 1.43216 1.06145 1.32132 0.84229 0.77677 0.76188 0.76150 1.20920 1.20505 1.20286 1.47922 1.49065 1.11632 1.22937 1.21704 0.98738 0.83075 1.02603 1.20032 0.79000 0.87105 0.83814 1.90539 1.57902 1.17042 1.75954 1.22368 0.96029 0.96621 0.93775 0.87649 1.23047 0.98612 1.00442 0.89051 1.63970 1.33896 1.07770 1.17590 1.22928 1.00006 0.88039 1.00961 1.23316 0.94226 0.93619 1.02311 1.63607 1.34352 1.06534 1.16801 1.23058 0.97037 0.99714 0.91701 1.22475 0.89690 0.97168 0.98281 0.89565 1.21894 1.02044 0.93880 1.02154 0.95700 0.93506 0.92025 0.92047 0.93574 0.92789 0.89889 0.89132 0.89396 0.90232 0.90439 0.86331 0.90698 0.90038 0.90068 0.91849 0.91954 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.03 37.15 0.34 -2.97 16 2 C 0.24 5.71 2.24 -69.08 -0.15 5.56 16 3 H 0.05 1.41 5.47 -51.93 -0.28 1.12 16 4 C -0.62 -16.91 8.29 -34.44 -0.29 -17.19 16 5 H 0.06 1.80 7.38 -52.49 -0.39 1.41 16 6 C 0.05 1.28 5.17 -17.82 -0.09 1.18 16 7 N -0.89 -26.53 13.70 55.43 0.76 -25.77 16 8 Si 1.03 25.37 26.49 -169.99 -4.50 20.86 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.32 6.23 56.52 0.35 -5.97 16 12 N -0.58 -11.92 2.70 -175.26 -0.47 -12.39 16 13 C 0.08 1.34 7.85 59.85 0.47 1.81 16 14 C 0.51 10.28 6.52 -10.99 -0.07 10.21 16 15 O -0.54 -12.60 13.09 5.56 0.07 -12.52 16 16 C 0.03 0.40 2.04 -68.54 -0.14 0.26 16 17 H 0.11 1.54 7.43 -51.92 -0.39 1.16 16 18 C 0.02 0.24 3.83 -3.50 -0.01 0.23 16 19 N -0.51 -6.23 5.24 -225.25 -1.18 -7.42 16 20 C 0.01 0.13 6.13 -3.49 -0.02 0.11 16 21 C -0.01 -0.08 5.69 -3.49 -0.02 -0.10 16 22 N -0.49 -7.40 5.05 -226.62 -1.14 -8.55 16 23 C 0.01 0.17 5.80 -3.49 -0.02 0.15 16 24 C 0.03 0.35 3.05 -67.38 -0.21 0.14 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 C -0.14 -1.22 8.63 37.16 0.32 -0.89 16 27 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.05 0.94 7.46 -51.93 -0.39 0.55 16 29 H 0.06 1.39 5.60 -51.93 -0.29 1.10 16 30 H 0.27 7.92 8.73 -40.82 -0.36 7.57 16 31 H 0.05 0.64 7.37 -51.93 -0.38 0.26 16 32 H 0.05 0.73 6.08 -51.92 -0.32 0.41 16 33 H 0.08 1.50 6.92 -51.93 -0.36 1.14 16 34 H 0.09 1.01 6.06 -51.93 -0.31 0.69 16 35 H 0.09 1.26 6.43 -51.93 -0.33 0.92 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.12 2.13 5.23 -51.93 -0.27 1.86 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.87 7.61 -51.93 -0.40 0.47 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -31.43 320.18 -8.56 -39.99 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.02 Total: 2.47 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 0.10 Total: -1.51 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -2.04 Total: -54.12 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.52 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.50 Total: 20.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.43 -8.56 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527658217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.989 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds