Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47199 * 2 1 4 4 C 1.50696 * 109.47664 * 120.00454 * 2 1 3 5 5 H 1.08006 * 120.00372 * 114.07687 * 4 2 1 6 6 C 1.37877 * 119.99947 * 294.08319 * 4 2 1 7 7 N 1.31509 * 120.00276 * 159.87702 * 6 4 2 8 8 Si 1.86805 * 119.99930 * 339.87617 * 6 4 2 9 9 H 1.48494 * 109.47050 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.46963 * 300.00468 * 8 6 4 11 11 H 1.48503 * 109.46873 * 60.00129 * 8 6 4 12 12 N 1.46500 * 109.46892 * 240.00292 * 2 1 3 13 13 C 1.46501 * 120.00504 * 299.99820 * 12 2 1 14 14 C 1.34780 * 120.00007 * 119.99522 * 12 2 1 15 15 O 1.21277 * 120.00061 * 5.10723 * 14 12 2 16 16 C 1.50704 * 120.00149 * 185.10013 * 14 12 2 17 17 H 1.08999 * 109.57650 * 54.87627 * 16 14 12 18 18 C 1.53235 * 109.58175 * 294.60767 * 16 14 12 19 19 N 1.47272 * 108.80091 * 240.20851 * 18 16 14 20 20 C 1.47317 * 110.15497 * 60.80842 * 19 18 16 21 21 C 1.53207 * 108.80286 * 299.18310 * 20 19 18 22 22 N 1.47266 * 109.58076 * 175.28809 * 16 14 12 23 23 C 1.47316 * 110.15728 * 180.60422 * 22 16 14 24 24 C 1.47317 * 110.15736 * 299.18707 * 19 18 16 25 25 H 1.09006 * 109.58118 * 301.01206 * 24 19 18 26 26 C 1.53002 * 109.58173 * 180.60503 * 24 19 18 27 27 H 1.08999 * 109.47454 * 53.95646 * 1 2 3 28 28 H 1.09001 * 109.47072 * 173.95612 * 1 2 3 29 29 H 1.09002 * 109.47027 * 293.95159 * 1 2 3 30 30 H 0.97001 * 119.99875 * 354.92503 * 7 6 4 31 31 H 1.09005 * 109.47162 * 96.16400 * 13 12 2 32 32 H 1.09002 * 109.47540 * 216.17000 * 13 12 2 33 33 H 1.09008 * 109.46579 * 336.16893 * 13 12 2 34 34 H 1.08995 * 109.57903 * 0.02562 * 18 16 14 35 35 H 1.08999 * 109.58101 * 120.41469 * 18 16 14 36 36 H 1.08994 * 109.58793 * 58.98169 * 20 19 18 37 37 H 1.09001 * 109.58104 * 179.25428 * 20 19 18 38 38 H 1.09004 * 109.57819 * 119.80422 * 21 20 19 39 39 H 1.09001 * 109.58628 * 240.21060 * 21 20 19 40 40 H 1.08999 * 109.58271 * 58.98527 * 23 22 16 41 41 H 1.09004 * 109.58113 * 179.25312 * 23 22 16 42 42 H 1.08999 * 109.46921 * 59.99728 * 26 24 19 43 43 H 1.08996 * 109.46994 * 179.97438 * 26 24 19 44 44 H 1.09004 * 109.47093 * 299.99870 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5722 -1.6410 1.1341 6 6 1.8029 -0.1727 2.4790 7 7 1.8707 -0.9372 3.5468 8 14 1.3957 1.6420 2.6539 9 1 1.1955 1.9683 4.0886 10 1 2.5148 2.4548 2.1133 11 1 0.1536 1.9456 1.8987 12 7 2.0182 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.1625 1.0952 -1.8471 16 6 3.2003 -0.7081 -3.3691 17 1 2.3119 -1.0518 -3.8988 18 6 4.1076 -1.9032 -3.0584 19 7 5.4121 -1.6903 -3.7080 20 6 6.0446 -0.4659 -3.1874 21 6 5.1374 0.7290 -3.4982 22 7 3.9426 0.2452 -4.2112 23 6 4.3347 -0.3954 -5.4785 24 6 5.2419 -1.5902 -5.1679 25 1 4.7842 -2.5045 -5.5459 26 6 6.6057 -1.3844 -5.8302 27 1 -0.3634 0.6047 -0.8309 28 1 -0.3633 -1.0220 -0.1082 29 1 -0.3633 0.4172 0.9392 30 1 2.0090 -1.8926 3.4514 31 1 0.8002 -2.1451 -2.0905 32 1 2.5068 -2.6091 -1.8889 33 1 1.4227 -2.5688 -0.4776 34 1 4.2452 -1.9868 -1.9804 35 1 3.6530 -2.8165 -3.4424 36 1 6.1771 -0.5532 -2.1091 37 1 7.0144 -0.3246 -3.6644 38 1 4.8374 1.2115 -2.5679 39 1 5.6735 1.4414 -4.1252 40 1 3.4443 -0.7398 -6.0046 41 1 4.8714 0.3218 -6.0996 42 1 7.2536 -2.2296 -5.5980 43 1 6.4778 -1.3111 -6.9101 44 1 7.0574 -0.4663 -5.4543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527658218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = 13.191382 kcal Electronic energy + Delta-G solvation = -24242.194088 eV Core-core repulsion = 21002.817562 eV Total energy + Delta-G solvation = -3239.376526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55431 -38.76207 -35.61836 -33.57440 -33.11752 -32.37737 -31.34714 -29.88183 -27.41105 -26.39132 -24.82809 -23.96821 -23.57392 -22.51422 -20.97231 -18.75930 -17.97338 -17.59531 -17.34256 -16.62380 -15.98006 -15.69411 -14.88290 -14.47846 -13.91255 -13.74981 -13.32897 -13.21294 -13.07486 -12.97620 -12.89490 -12.63495 -12.59073 -12.18234 -11.93311 -11.74865 -11.66558 -11.51262 -11.44525 -11.25213 -11.14200 -10.62533 -10.50186 -10.40292 -10.01769 -9.81817 -9.78356 -9.12509 -8.87243 -8.34416 -7.83676 -7.63707 -6.50567 -4.15228 3.16674 3.38715 3.45743 3.48734 3.63013 3.75828 4.18608 4.46606 4.50538 4.68703 4.72648 4.86594 5.10546 5.12063 5.16838 5.22456 5.28755 5.35848 5.49575 5.52774 5.61561 5.63429 5.70346 5.78781 5.79403 5.88129 5.95536 5.98982 6.23431 6.28656 6.32288 6.42139 6.55328 6.60023 6.71701 6.93561 7.05399 7.11761 7.20095 7.43690 7.83372 8.26689 8.32437 8.74595 8.92751 9.51022 10.84610 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.005073 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.879271 B = 5517.639713 C = 5590.262807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.236 3.764 3 H 0.054 0.946 4 C -0.613 4.613 5 H 0.061 0.939 6 C 0.042 3.958 7 N -0.897 5.897 8 Si 1.033 2.967 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.275 1.275 12 N -0.585 5.585 13 C 0.074 3.926 14 C 0.515 3.485 15 O -0.535 6.535 16 C 0.025 3.975 17 H 0.105 0.895 18 C 0.021 3.979 19 N -0.510 5.510 20 C 0.007 3.993 21 C -0.009 4.009 22 N -0.493 5.493 23 C 0.015 3.985 24 C 0.034 3.966 25 H 0.086 0.914 26 C -0.140 4.140 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -2.785 -17.890 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.134 3.866 3 H 0.072 0.928 4 C -0.651 4.651 5 H 0.080 0.920 6 C -0.165 4.165 7 N -0.530 5.530 8 Si 0.860 3.140 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.201 1.201 12 N -0.316 5.316 13 C -0.069 4.069 14 C 0.301 3.699 15 O -0.414 6.414 16 C -0.089 4.089 17 H 0.122 0.878 18 C -0.109 4.109 19 N -0.232 5.232 20 C -0.123 4.123 21 C -0.138 4.138 22 N -0.214 5.214 23 C -0.116 4.116 24 C -0.076 4.076 25 H 0.104 0.896 26 C -0.198 4.198 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.308 -1.009 -16.605 17.184 hybrid contribution 0.191 -1.485 -1.190 1.912 sum 4.498 -2.493 -17.794 18.523 Atomic orbital electron populations 1.22463 0.98679 1.00234 1.00187 1.19180 0.90288 0.94687 0.82418 0.92816 1.22117 1.41209 1.10826 0.90916 0.92050 1.25624 0.93503 1.05570 0.91783 1.70862 1.44010 1.06886 1.31213 0.84210 0.77598 0.76004 0.76141 1.20955 1.20508 1.20111 1.47904 1.49129 1.11610 1.22907 1.21842 0.99303 0.83048 1.02748 1.20026 0.79196 0.86396 0.84241 1.90496 1.54240 1.19157 1.77477 1.22389 0.98586 0.93287 0.94621 0.87753 1.23015 0.89251 0.97196 1.01425 1.63981 1.20237 1.35165 1.03769 1.22971 0.98372 0.89471 1.01488 1.23403 0.90225 0.97160 1.02961 1.63638 1.21487 1.32809 1.03466 1.23051 0.99477 0.96247 0.92775 1.22476 0.97206 0.99005 0.88963 0.89619 1.21870 0.95986 1.02288 0.99637 0.95577 0.93483 0.91832 0.92136 0.93878 0.92103 0.89649 0.88958 0.89472 0.90157 0.90077 0.85607 0.90923 0.90441 0.89826 0.91941 0.92084 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.99 37.16 0.33 -3.07 16 2 C 0.24 5.66 2.21 -69.09 -0.15 5.51 16 3 H 0.05 1.42 5.51 -51.93 -0.29 1.14 16 4 C -0.61 -16.62 8.29 -34.44 -0.29 -16.91 16 5 H 0.06 1.77 7.48 -52.48 -0.39 1.38 16 6 C 0.04 1.18 5.26 -17.82 -0.09 1.09 16 7 N -0.90 -26.74 13.70 55.43 0.76 -25.98 16 8 Si 1.03 25.28 26.36 -169.99 -4.48 20.80 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.22 5.94 56.52 0.34 -5.89 16 12 N -0.58 -11.92 2.75 -175.26 -0.48 -12.41 16 13 C 0.07 1.21 8.68 59.85 0.52 1.73 16 14 C 0.52 10.26 6.53 -10.98 -0.07 10.19 16 15 O -0.54 -12.52 12.87 5.56 0.07 -12.44 16 16 C 0.03 0.38 2.17 -68.54 -0.15 0.24 16 17 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 18 C 0.02 0.29 3.91 -3.50 -0.01 0.28 16 19 N -0.51 -6.69 5.24 -225.24 -1.18 -7.88 16 20 C 0.01 0.09 5.75 -3.49 -0.02 0.07 16 21 C -0.01 -0.13 5.70 -3.49 -0.02 -0.15 16 22 N -0.49 -7.38 5.09 -226.62 -1.15 -8.54 16 23 C 0.01 0.17 5.79 -3.49 -0.02 0.14 16 24 C 0.03 0.36 3.05 -67.38 -0.21 0.15 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 C -0.14 -1.25 8.63 37.16 0.32 -0.93 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.95 7.48 -51.93 -0.39 0.56 16 29 H 0.06 1.43 5.19 -51.93 -0.27 1.16 16 30 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.84 4.27 -51.93 -0.22 0.62 16 33 H 0.08 1.54 7.02 -51.92 -0.36 1.17 16 34 H 0.09 1.49 6.76 -51.93 -0.35 1.14 16 35 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.08 0.97 6.17 -51.93 -0.32 0.65 16 38 H 0.13 2.39 5.04 -51.93 -0.26 2.13 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.87 7.62 -51.93 -0.40 0.48 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.54 6.31 -51.93 -0.33 0.21 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -31.19 319.55 -8.50 -39.70 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.99 Total: 3.59 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 0.14 Total: -1.66 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -2.06 Total: -54.80 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.48 Total: 20.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.19 -8.50 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527658218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.889 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds