Wall clock time and date at job start Tue Mar 31 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46931 * 2 1 4 4 C 1.50707 * 109.46645 * 240.00340 * 2 1 3 5 5 H 1.07996 * 119.99688 * 239.99696 * 4 2 1 6 6 C 1.37872 * 119.99832 * 59.99960 * 4 2 1 7 7 N 1.31513 * 120.00299 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99450 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46789 * 90.00257 * 8 6 4 10 10 H 1.48498 * 109.46838 * 209.99690 * 8 6 4 11 11 H 1.48500 * 109.47266 * 329.99797 * 8 6 4 12 12 N 1.46497 * 109.47128 * 120.00622 * 2 1 3 13 13 C 1.46497 * 120.00520 * 59.99467 * 12 2 1 14 14 C 1.34783 * 119.99333 * 239.99867 * 12 2 1 15 15 O 1.21282 * 120.00012 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99477 * 179.97438 * 14 12 2 17 17 H 1.08996 * 109.57933 * 53.49487 * 16 14 12 18 18 C 1.53226 * 109.58455 * 293.08055 * 16 14 12 19 19 N 1.47279 * 108.80433 * 240.20310 * 18 16 14 20 20 C 1.47314 * 110.15177 * 299.18973 * 19 18 16 21 21 C 1.53205 * 108.80517 * 60.81504 * 20 19 18 22 22 N 1.47273 * 109.57689 * 173.76212 * 16 14 12 23 23 C 1.47309 * 110.16035 * 58.99270 * 22 16 14 24 24 C 1.47313 * 110.15768 * 60.81307 * 19 18 16 25 25 H 1.08993 * 109.58004 * 179.39904 * 24 19 18 26 26 C 1.52999 * 109.69481 * 59.05406 * 24 19 18 27 27 H 1.09001 * 109.46685 * 299.99918 * 1 2 3 28 28 H 1.09000 * 109.47516 * 59.99555 * 1 2 3 29 29 H 1.08994 * 109.46931 * 180.02562 * 1 2 3 30 30 H 0.97008 * 119.99942 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46623 * 89.99942 * 13 12 2 32 32 H 1.08995 * 109.46901 * 330.00054 * 13 12 2 33 33 H 1.09003 * 109.47041 * 209.99995 * 13 12 2 34 34 H 1.09001 * 109.58202 * 359.97438 * 18 16 14 35 35 H 1.09003 * 109.58469 * 120.40124 * 18 16 14 36 36 H 1.09002 * 109.58039 * 180.60968 * 20 19 18 37 37 H 1.09007 * 109.58381 * 300.88093 * 20 19 18 38 38 H 1.09000 * 109.58380 * 240.20006 * 21 20 19 39 39 H 1.08997 * 109.57937 * 119.78673 * 21 20 19 40 40 H 1.08995 * 109.58515 * 180.60523 * 23 22 16 41 41 H 1.08999 * 109.57956 * 300.87825 * 23 22 16 42 42 H 1.08995 * 109.47021 * 300.61516 * 26 24 19 43 43 H 1.09000 * 109.46787 * 60.61492 * 26 24 19 44 44 H 1.09002 * 109.47016 * 180.60917 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4870 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7121 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0866 1.1253 1.8911 16 6 3.2952 -0.7460 3.3140 17 1 3.8027 -1.6658 3.0234 18 6 2.1149 -1.0759 4.2338 19 7 2.3217 -0.4071 5.5296 20 6 3.5631 -0.8908 6.1580 21 6 4.7432 -0.5609 5.2383 22 7 4.2331 0.1272 4.0397 23 6 3.5647 1.3826 4.4233 24 6 2.3847 1.0528 5.3431 25 1 2.5270 1.5385 6.3084 26 6 1.0844 1.5479 4.7066 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 0.7080 1.1610 -3.4844 31 1 2.4158 -2.7377 0.9715 32 1 0.6905 -2.3002 0.9846 33 1 1.6239 -2.2853 2.5001 34 1 1.1892 -0.7190 3.7825 35 1 2.0589 -2.1540 4.3839 36 1 3.7013 -0.3983 7.1205 37 1 3.5022 -1.9692 6.3049 38 1 5.2460 -1.4823 4.9444 39 1 5.4440 0.0890 5.7622 40 1 4.2697 2.0257 4.9500 41 1 3.2030 1.8916 3.5299 42 1 0.9415 1.0574 3.7438 43 1 0.2463 1.3123 5.3624 44 1 1.1393 2.6267 4.5604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527658219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:22 Heat of formation + Delta-G solvation = 12.853170 kcal Electronic energy + Delta-G solvation = -24414.123852 eV Core-core repulsion = 21174.732660 eV Total energy + Delta-G solvation = -3239.391192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.52694 -38.52294 -35.42474 -33.53934 -33.12012 -32.19076 -31.42805 -29.11348 -27.02751 -26.25265 -25.22236 -24.24418 -23.69552 -22.12558 -21.02969 -18.75039 -18.00081 -17.27676 -16.57693 -16.29994 -15.96967 -15.48996 -14.87366 -14.48439 -14.05546 -13.69661 -13.39760 -13.14226 -13.01559 -12.85779 -12.74857 -12.58407 -12.43419 -11.80869 -11.72737 -11.55992 -11.41206 -11.34617 -11.07912 -10.93924 -10.80082 -10.76343 -10.52242 -10.40217 -10.26554 -10.13943 -9.76915 -9.16863 -8.75788 -8.42331 -7.68445 -7.51347 -6.07503 -4.15259 3.26236 3.29499 3.34079 3.37755 3.57197 3.83178 4.25237 4.40398 4.62041 4.78346 4.81508 4.88505 5.10482 5.23113 5.28064 5.37424 5.39070 5.45058 5.54701 5.56309 5.66615 5.73615 5.74387 5.85205 5.92648 6.03922 6.09765 6.25957 6.28902 6.35310 6.62207 6.74100 6.75705 6.81776 7.03413 7.12510 7.21126 7.43335 7.52217 7.71502 8.00953 8.18969 8.51285 8.83429 9.05215 9.51397 10.97759 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029862 B = 0.005043 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.407034 B = 5550.586534 C = 5738.844988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.590 5.590 13 C 0.079 3.921 14 C 0.516 3.484 15 O -0.534 6.534 16 C 0.024 3.976 17 H 0.104 0.896 18 C 0.019 3.981 19 N -0.511 5.511 20 C 0.010 3.990 21 C 0.010 3.990 22 N -0.493 5.493 23 C -0.008 4.008 24 C 0.038 3.962 25 H 0.082 0.918 26 C -0.141 4.141 27 H 0.010 0.990 28 H 0.094 0.906 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -4.537 16.085 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.321 5.321 13 C -0.065 4.065 14 C 0.302 3.698 15 O -0.413 6.413 16 C -0.090 4.090 17 H 0.122 0.878 18 C -0.111 4.111 19 N -0.233 5.233 20 C -0.120 4.120 21 C -0.120 4.120 22 N -0.214 5.214 23 C -0.137 4.137 24 C -0.072 4.072 25 H 0.100 0.900 26 C -0.199 4.199 27 H 0.029 0.971 28 H 0.112 0.888 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.913 -3.798 15.805 16.367 hybrid contribution 0.409 -0.744 -0.854 1.204 sum 2.322 -4.542 14.951 15.797 Atomic orbital electron populations 1.22099 0.98239 0.99349 1.00821 1.18932 0.90754 0.94472 0.79858 0.91902 1.21311 1.31762 1.12952 0.90288 0.92331 1.24884 0.94965 0.94957 0.98955 1.69875 1.36420 1.22602 1.23745 0.86496 0.79193 0.79293 0.82421 1.20631 1.21107 1.19957 1.48185 1.48895 1.11582 1.23458 1.21721 1.01793 0.83378 0.99629 1.19951 0.78968 0.87066 0.83858 1.90488 1.57973 1.17004 1.75797 1.22405 0.94616 0.97623 0.94370 0.87844 1.22999 0.98759 0.99928 0.89430 1.63984 1.33345 1.04971 1.20995 1.22907 0.89530 1.01362 0.98207 1.22952 0.97415 1.00099 0.91574 1.63630 1.33521 1.04099 1.20158 1.23591 0.95175 0.92519 1.02454 1.22454 0.96979 0.88195 0.99577 0.90008 1.21866 0.96016 1.01149 1.00828 0.97060 0.88779 0.95099 0.92701 0.93261 0.90682 0.92662 0.88952 0.89595 0.90337 0.90235 0.90322 0.90082 0.91095 0.85040 0.92119 0.92336 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.26 6.52 2.64 -69.08 -0.18 6.34 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.52 -14.11 8.37 -34.44 -0.29 -14.40 16 5 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.59 -12.25 2.75 -175.26 -0.48 -12.73 16 13 C 0.08 1.29 9.19 59.85 0.55 1.84 16 14 C 0.52 10.47 5.77 -10.98 -0.06 10.41 16 15 O -0.53 -12.76 12.81 5.56 0.07 -12.69 16 16 C 0.02 0.37 2.05 -68.54 -0.14 0.23 16 17 H 0.10 1.53 7.92 -51.93 -0.41 1.12 16 18 C 0.02 0.26 3.64 -3.50 -0.01 0.24 16 19 N -0.51 -6.52 5.25 -225.24 -1.18 -7.71 16 20 C 0.01 0.11 6.13 -3.49 -0.02 0.08 16 21 C 0.01 0.11 6.13 -3.49 -0.02 0.09 16 22 N -0.49 -7.66 5.10 -226.63 -1.16 -8.81 16 23 C -0.01 -0.13 5.36 -3.49 -0.02 -0.15 16 24 C 0.04 0.50 3.04 -67.38 -0.20 0.30 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.14 -1.95 8.66 37.16 0.32 -1.63 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 29 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 33 H 0.05 0.72 4.50 -51.93 -0.23 0.48 16 34 H 0.09 1.38 5.31 -51.93 -0.28 1.10 16 35 H 0.09 0.98 7.54 -51.93 -0.39 0.59 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.13 2.48 4.46 -51.93 -0.23 2.25 16 42 H 0.06 0.99 5.54 -51.93 -0.29 0.71 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -30.29 322.01 -9.08 -39.37 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.95 Total: 4.14 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 0.16 Total: 1.93 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -2.19 Total: -53.64 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.29 -9.08 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527658219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.220 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds