Wall clock time and date at job start Tue Mar 31 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47586 * 2 1 4 4 C 1.50704 * 109.46978 * 239.99785 * 2 1 3 5 5 H 1.08001 * 120.00005 * 241.35097 * 4 2 1 6 6 C 1.37869 * 120.00155 * 61.34845 * 4 2 1 7 7 N 1.31511 * 120.00309 * 193.97598 * 6 4 2 8 8 Si 1.86799 * 119.99845 * 13.97762 * 6 4 2 9 9 H 1.48504 * 109.47349 * 84.54915 * 8 6 4 10 10 H 1.48500 * 109.47227 * 204.54700 * 8 6 4 11 11 H 1.48496 * 109.47179 * 324.54775 * 8 6 4 12 12 C 1.53006 * 109.46847 * 120.00062 * 2 1 3 13 13 N 1.46500 * 109.47207 * 299.99696 * 12 2 1 14 14 C 1.34764 * 120.00175 * 179.72453 * 13 12 2 15 15 O 1.21595 * 120.00084 * 0.27879 * 14 13 12 16 16 N 1.34782 * 120.00510 * 180.27663 * 14 13 12 17 17 C 1.47366 * 125.56890 * 359.69085 * 16 14 13 18 18 C 1.55093 * 104.65952 * 154.72633 * 17 16 14 19 19 C 1.54942 * 101.78269 * 37.42884 * 18 17 16 20 20 H 1.08998 * 113.37292 * 87.69638 * 19 18 17 21 21 C 1.53787 * 108.81017 * 214.02104 * 19 18 17 22 22 N 1.47856 * 107.12554 * 113.28907 * 21 19 18 23 23 C 1.48416 * 105.77723 * 333.39025 * 22 21 19 24 24 C 1.46847 * 125.58034 * 180.02562 * 16 14 13 25 25 H 1.09006 * 112.02384 * 58.23500 * 24 16 14 26 26 H 1.08998 * 109.46938 * 309.37287 * 1 2 3 27 27 H 1.08999 * 109.46958 * 69.36957 * 1 2 3 28 28 H 1.08999 * 109.47477 * 189.36813 * 1 2 3 29 29 H 1.08994 * 109.47508 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46705 * 300.00232 * 3 2 1 31 31 H 1.09001 * 109.47059 * 59.99430 * 3 2 1 32 32 H 0.97006 * 120.00387 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47025 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47011 * 60.00129 * 12 2 1 35 35 H 0.97006 * 119.99761 * 0.02562 * 13 12 2 36 36 H 1.08994 * 110.37746 * 273.66177 * 17 16 14 37 37 H 1.09002 * 110.37200 * 36.00634 * 17 16 14 38 38 H 1.08997 * 111.15909 * 279.24567 * 18 17 16 39 39 H 1.08997 * 110.86354 * 155.47961 * 18 17 16 40 40 H 1.09002 * 109.90440 * 353.91938 * 21 19 18 41 41 H 1.08993 * 110.06176 * 232.75131 * 21 19 18 42 42 H 1.00897 * 111.00304 * 93.87738 * 22 21 19 43 43 H 1.09007 * 110.58778 * 280.54330 * 23 22 21 44 44 H 1.08998 * 110.72101 * 157.68919 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2235 -2.4825 7 7 1.9157 -0.9727 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1418 2.4815 -2.7084 10 1 0.2471 1.5864 -3.9288 11 1 0.1419 1.8042 -1.5159 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4455 14 6 1.8726 -0.4943 3.6695 15 8 2.5716 -1.4830 3.7811 16 7 1.4188 0.1378 4.7700 17 6 0.5727 1.3444 4.7779 18 6 -0.1817 1.2858 6.1317 19 6 0.9071 0.7176 7.0764 20 1 1.5402 1.4869 7.5185 21 6 0.2319 -0.1755 8.1306 22 7 0.6798 -1.5618 7.8782 23 6 1.0113 -1.6218 6.4327 24 6 1.6921 -0.2591 6.1571 25 1 2.7604 -0.2827 6.3726 26 1 -0.3633 0.6519 0.7944 27 1 -0.3633 0.3621 -0.9618 28 1 -0.3634 -1.0139 0.1673 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6980 -0.6300 -4.4269 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2492 35 1 0.9937 0.7579 2.3564 36 1 1.1899 2.2410 4.7228 37 1 -0.1342 1.3176 3.9486 38 1 -1.0383 0.6142 6.0760 39 1 -0.4902 2.2824 6.4476 40 1 -0.8518 -0.1119 8.0319 41 1 0.5320 0.1350 9.1314 42 1 1.4838 -1.7906 8.4433 43 1 0.1052 -1.7254 5.8357 44 1 1.6993 -2.4423 6.2286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575297899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:36 Heat of formation + Delta-G solvation = -1.259325 kcal Electronic energy + Delta-G solvation = -23259.063625 eV Core-core repulsion = 20019.060469 eV Total energy + Delta-G solvation = -3240.003156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79227 -38.81066 -36.69982 -35.31454 -33.22772 -31.84223 -31.37557 -28.65160 -27.70513 -26.40481 -25.73041 -24.80583 -23.01379 -22.08697 -20.55541 -19.47332 -19.15790 -18.13287 -16.85208 -16.17166 -15.95767 -15.67170 -15.17824 -14.64727 -14.23041 -14.10611 -13.72744 -13.38869 -13.21654 -13.10642 -12.90482 -12.71196 -12.57458 -12.22781 -12.21694 -12.05544 -11.99169 -11.29843 -11.12622 -11.03210 -10.91038 -10.42752 -10.30708 -10.17790 -10.07216 -9.83894 -9.18256 -9.13895 -8.69365 -8.67097 -8.47700 -8.22341 -6.14900 -4.12134 2.74692 3.23154 3.30068 3.37868 3.48786 3.93376 4.03222 4.21632 4.35005 4.38789 4.64414 4.84327 4.89003 4.98808 5.09309 5.15770 5.25446 5.33889 5.40444 5.48509 5.64698 5.73529 5.79762 5.88078 5.96106 6.03991 6.07618 6.17868 6.34681 6.42196 6.51348 6.53591 6.62816 6.70118 6.82161 6.99286 7.06328 7.21155 7.27073 7.43025 7.72460 8.25707 8.46182 8.89355 8.92586 9.48902 10.98213 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036347 B = 0.003981 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.177693 B = 7032.250018 C = 7446.272047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.250 1.250 12 C 0.160 3.840 13 N -0.735 5.735 14 C 0.717 3.283 15 O -0.590 6.590 16 N -0.635 5.635 17 C 0.099 3.901 18 C -0.121 4.121 19 C -0.132 4.132 20 H 0.096 0.904 21 C 0.050 3.950 22 N -0.673 5.673 23 C 0.039 3.961 24 C 0.128 3.872 25 H 0.084 0.916 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.391 0.609 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.338 0.662 43 H 0.083 0.917 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 7.497 21.821 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.037 3.963 13 N -0.390 5.390 14 C 0.419 3.581 15 O -0.468 6.468 16 N -0.375 5.375 17 C -0.024 4.024 18 C -0.160 4.160 19 C -0.152 4.152 20 H 0.114 0.886 21 C -0.080 4.080 22 N -0.300 5.300 23 C -0.092 4.092 24 C 0.021 3.979 25 H 0.102 0.898 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.226 0.774 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.153 0.847 43 H 0.101 0.899 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.021 6.327 21.543 23.007 hybrid contribution 0.318 2.014 -0.493 2.097 sum -4.703 8.340 21.050 23.126 Atomic orbital electron populations 1.22279 0.97866 0.99809 0.99802 1.18730 0.92503 0.92260 0.93772 1.22343 1.01197 0.98331 0.98399 1.20713 1.34050 1.12334 0.87938 0.90481 1.24964 0.94681 0.97282 0.95778 1.69950 1.48193 1.35893 0.98716 0.87293 0.79319 0.85607 0.75957 1.21377 1.23391 1.17580 1.21395 0.98374 0.95480 0.81034 1.45521 1.55858 1.33056 1.04561 1.15551 0.80231 0.82534 0.79810 1.90905 1.42972 1.27439 1.85503 1.47502 1.55107 1.30379 1.04488 1.22329 0.93317 0.88252 0.98548 1.22866 0.97314 1.02036 0.93736 1.23390 0.97211 0.98327 0.96283 0.88555 1.22773 1.00697 0.87033 0.97516 1.62712 1.38324 1.23426 1.05509 1.23441 1.00360 0.96865 0.88484 1.22881 0.99202 0.95107 0.80674 0.89788 0.96163 0.92551 0.93374 0.92789 0.94084 0.95365 0.92553 0.92176 0.92042 0.77386 0.91578 0.90761 0.90101 0.89858 0.90069 0.91342 0.84706 0.89886 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.53 37.16 0.28 -2.59 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -2.97 7.52 37.15 0.28 -2.69 16 4 C -0.51 -13.83 8.62 -34.44 -0.30 -14.13 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 6 C 0.08 2.10 5.32 -17.82 -0.09 2.01 16 7 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 8 Si 0.89 21.07 22.79 -169.99 -3.87 17.20 16 9 H -0.29 -6.79 7.10 56.52 0.40 -6.38 16 10 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.25 -5.39 4.65 56.52 0.26 -5.13 16 12 C 0.16 3.29 4.49 -4.04 -0.02 3.27 16 13 N -0.74 -12.64 4.96 -65.22 -0.32 -12.96 16 14 C 0.72 12.52 8.29 -86.92 -0.72 11.80 16 15 O -0.59 -12.51 16.36 5.28 0.09 -12.42 16 16 N -0.64 -8.37 2.96 -167.01 -0.49 -8.87 16 17 C 0.10 0.96 6.61 -2.46 -0.02 0.94 16 18 C -0.12 -0.89 6.35 -24.60 -0.16 -1.05 16 19 C -0.13 -1.02 4.00 -87.90 -0.35 -1.37 16 20 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 21 C 0.05 0.37 7.07 -2.89 -0.02 0.35 16 22 N -0.67 -6.29 7.52 -110.40 -0.83 -7.12 16 23 C 0.04 0.46 6.58 -2.03 -0.01 0.44 16 24 C 0.13 1.44 3.86 -65.51 -0.25 1.18 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 27 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 28 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.88 2.25 -51.92 -0.12 0.76 16 31 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.39 5.91 4.70 -40.82 -0.19 5.72 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.71 7.23 -51.93 -0.38 0.33 16 38 H 0.08 0.64 7.53 -51.93 -0.39 0.25 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.60 7.30 -51.93 -0.38 0.23 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.34 2.65 8.92 -39.29 -0.35 2.30 16 43 H 0.08 1.11 8.09 -51.92 -0.42 0.69 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -31.62 326.14 -8.30 -39.92 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.09 Total: 6.53 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.46 Total: -1.27 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.87 Total: -54.86 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -3.87 Total: 17.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.62 -8.30 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.658 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds