Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47117 * 141.47866 * 3 2 1 5 5 N 1.46901 * 109.47201 * 179.46266 * 4 3 2 6 6 C 1.46897 * 110.99865 * 297.55317 * 5 4 3 7 7 C 1.50703 * 109.47048 * 292.84309 * 6 5 4 8 8 H 1.07998 * 120.00224 * 354.99076 * 7 6 5 9 9 C 1.37879 * 119.99829 * 174.99140 * 7 6 5 10 10 N 1.31524 * 119.99723 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 120.00150 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47085 * 60.00079 * 11 9 7 13 13 H 1.48500 * 109.47644 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47131 * 299.99942 * 11 9 7 15 15 C 1.46898 * 110.99537 * 61.50973 * 5 4 3 16 16 C 1.53003 * 109.47406 * 66.04820 * 15 5 4 17 17 C 1.52998 * 109.46878 * 179.97438 * 16 15 5 18 18 N 1.46901 * 109.61549 * 59.77918 * 17 16 15 19 19 C 1.53178 * 109.54084 * 179.97438 * 17 16 15 20 20 C 1.53092 * 109.16114 * 176.85074 * 19 17 16 21 21 O 1.42909 * 109.41424 * 302.39030 * 20 19 17 22 22 C 1.42901 * 114.09576 * 61.16329 * 21 20 19 23 23 C 1.53095 * 109.41249 * 298.84102 * 22 21 20 24 24 H 1.09001 * 109.47278 * 21.47713 * 3 2 1 25 25 H 1.08996 * 109.46938 * 261.47681 * 3 2 1 26 26 H 1.09003 * 109.47142 * 59.46289 * 4 3 2 27 27 H 1.08999 * 109.47430 * 299.46768 * 4 3 2 28 28 H 1.08990 * 109.47001 * 52.84693 * 6 5 4 29 29 H 1.09005 * 109.46488 * 172.84808 * 6 5 4 30 30 H 0.96993 * 119.99400 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47428 * 306.03947 * 15 5 4 32 32 H 1.09000 * 109.46722 * 186.04311 * 15 5 4 33 33 H 1.09000 * 109.47399 * 59.99685 * 16 15 5 34 34 H 1.09000 * 109.46765 * 299.99465 * 16 15 5 35 35 H 1.00904 * 111.00320 * 180.22156 * 18 17 16 36 36 H 1.00907 * 110.99923 * 304.16827 * 18 17 16 37 37 H 1.09004 * 109.52034 * 56.94660 * 19 17 16 38 38 H 1.08999 * 109.52466 * 296.75487 * 19 17 16 39 39 H 1.09003 * 109.47823 * 182.41451 * 20 19 17 40 40 H 1.08997 * 109.49587 * 62.37988 * 20 19 17 41 41 H 1.09002 * 109.48063 * 58.82184 * 22 21 20 42 42 H 1.09002 * 109.47716 * 178.85871 * 22 21 20 43 43 H 1.09005 * 109.52334 * 297.70144 * 23 22 21 44 44 H 1.08997 * 109.51963 * 177.51815 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1176 1.1295 -0.8984 5 7 4.5865 1.1382 -0.8883 6 6 5.1020 1.4065 0.4609 7 6 4.7559 2.8180 0.8594 8 1 4.2797 3.4782 0.1497 9 6 5.0471 3.2666 2.1303 10 7 5.6275 2.4628 2.9944 11 14 4.6175 5.0160 2.6246 12 1 3.1518 5.2200 2.4992 13 1 5.0304 5.2484 4.0319 14 1 5.3279 5.9702 1.7357 15 6 5.1240 -0.1228 -1.4162 16 6 4.7710 -0.2463 -2.8999 17 6 5.3315 -1.5594 -3.4498 18 7 4.7541 -2.6900 -2.7106 19 6 4.9784 -1.6850 -4.9351 20 6 5.6096 -2.9623 -5.4953 21 8 7.0236 -2.9219 -5.2923 22 6 7.4142 -2.8523 -3.9194 23 6 6.8554 -1.5706 -3.2958 24 1 2.9719 -0.9555 -0.3763 25 1 2.9713 0.1531 1.0163 26 1 2.7459 2.0848 -0.5276 27 1 2.7621 0.9720 -1.9167 28 1 4.6521 0.7088 1.1671 29 1 6.1850 1.2823 0.4673 30 1 5.8320 2.7783 3.8885 31 1 4.6910 -0.9599 -0.8688 32 1 6.2076 -0.1333 -1.2986 33 1 5.2042 0.5908 -3.4474 34 1 3.6874 -0.2357 -3.0176 35 1 5.1130 -3.5681 -3.0547 36 1 4.9184 -2.5957 -1.7195 37 1 5.3643 -0.8206 -5.4755 38 1 3.8955 -1.7335 -5.0492 39 1 5.3976 -3.0348 -6.5621 40 1 5.1934 -3.8291 -4.9821 41 1 7.0214 -3.7175 -3.3854 42 1 8.5020 -2.8456 -3.8509 43 1 7.2791 -0.7038 -3.8032 44 1 7.1148 -1.5373 -2.2377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = -23.281876 kcal Electronic energy + Delta-G solvation = -22878.646722 eV Core-core repulsion = 19637.688596 eV Total energy + Delta-G solvation = -3240.958125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21360 -38.02990 -36.23780 -35.53807 -32.71951 -31.38246 -30.80040 -29.87908 -29.47706 -26.56741 -24.89731 -23.71729 -23.60016 -21.62712 -19.71038 -18.95294 -17.43134 -16.79065 -16.29014 -16.18526 -15.74096 -15.61127 -15.00819 -14.67438 -14.61915 -14.22325 -14.09336 -13.66773 -13.45631 -12.87336 -12.58450 -12.46691 -12.36601 -12.07374 -11.86249 -11.81123 -11.54934 -11.48085 -11.43094 -11.10521 -10.94766 -10.77323 -10.61192 -10.52154 -10.40308 -10.14075 -9.81404 -9.59765 -9.27299 -8.78316 -8.49746 -7.37837 -6.10215 -4.11668 3.12549 3.15612 3.30468 3.35029 3.37968 3.68285 4.30787 4.35430 4.41134 4.56440 4.64983 4.72320 4.82040 4.97652 5.03250 5.17540 5.26008 5.36534 5.40864 5.48523 5.50717 5.57637 5.61638 5.75213 5.77321 5.80747 5.91418 5.96711 6.05937 6.07788 6.29577 6.38679 6.45728 6.64836 6.99163 7.06321 7.16241 7.21346 7.31589 7.72265 7.88612 7.99298 8.05685 8.42877 8.96264 9.53679 11.00029 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.004293 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.783993 B = 6520.767947 C = 7536.632103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.226 3.774 3 C -0.074 4.074 4 C 0.072 3.928 5 N -0.527 5.527 6 C 0.187 3.813 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.058 3.942 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.047 3.953 16 C -0.102 4.102 17 C 0.121 3.879 18 N -0.840 5.840 19 C -0.141 4.141 20 C 0.058 3.942 21 O -0.385 6.385 22 C 0.059 3.941 23 C -0.187 4.187 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.004 0.996 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.333 0.667 36 H 0.344 0.656 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -11.359 -12.864 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.092 4.092 3 C -0.115 4.115 4 C -0.058 4.058 5 N -0.249 5.249 6 C 0.062 3.938 7 C -0.549 4.549 8 H 0.082 0.918 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.082 4.082 16 C -0.141 4.141 17 C 0.028 3.972 18 N -0.372 5.372 19 C -0.179 4.179 20 C -0.019 4.019 21 O -0.304 6.304 22 C -0.018 4.018 23 C -0.227 4.227 24 H 0.120 0.880 25 H 0.137 0.863 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.021 0.979 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.578 -10.721 -13.405 17.175 hybrid contribution 0.873 0.100 1.598 1.824 sum 1.450 -10.621 -11.807 15.947 Atomic orbital electron populations 1.81133 1.13226 1.09789 1.09979 1.29292 0.95295 0.92315 0.92264 1.20234 0.81511 1.03593 1.06198 1.22062 0.89304 0.97340 0.97136 1.62371 1.04856 1.29888 1.27767 1.19840 0.95390 0.96738 0.81846 1.21105 1.39516 0.97164 0.97077 0.91827 1.24952 0.95253 0.97649 0.96490 1.69929 1.42213 1.35741 1.05841 0.86609 0.78881 0.84844 0.77411 1.20256 1.21398 1.20146 1.22203 0.99918 0.91915 0.94155 1.21642 1.01466 0.94669 0.96284 1.20800 0.90804 0.92206 0.93374 1.59031 1.65588 1.04098 1.08499 1.22213 1.01935 0.98869 0.94891 1.22612 0.81062 0.96977 1.01232 1.87934 1.22574 1.94721 1.25139 1.22595 1.00285 0.96402 0.82486 1.23048 0.97962 0.99452 1.02242 0.88011 0.86299 0.89239 0.91677 0.97855 0.95450 0.92826 0.95076 0.91369 0.90828 0.91109 0.85319 0.84090 0.90653 0.90096 0.89051 0.93013 0.93687 0.88906 0.90203 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.53 18.54 42.16 0.78 -7.75 16 2 C 0.23 3.70 15.43 -20.76 -0.32 3.38 16 3 C -0.07 -1.09 5.05 -29.52 -0.15 -1.24 16 4 C 0.07 1.17 4.91 -3.82 -0.02 1.15 16 5 N -0.53 -9.39 4.69 -236.07 -1.11 -10.50 16 6 C 0.19 4.19 4.53 -4.98 -0.02 4.17 16 7 C -0.51 -13.06 8.39 -34.44 -0.29 -13.35 16 8 H 0.06 1.63 7.38 -52.49 -0.39 1.25 16 9 C 0.06 1.55 5.46 -17.81 -0.10 1.45 16 10 N -0.90 -24.96 13.29 55.43 0.74 -24.22 16 11 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.05 0.65 4.07 -3.82 -0.02 0.64 16 16 C -0.10 -1.23 4.39 -26.73 -0.12 -1.35 16 17 C 0.12 1.21 0.72 -131.42 -0.09 1.12 16 18 N -0.84 -7.86 8.81 0.89 0.01 -7.85 16 19 C -0.14 -1.33 5.12 -26.59 -0.14 -1.47 16 20 C 0.06 0.51 6.58 37.20 0.24 0.76 16 21 O -0.38 -4.12 10.77 -35.23 -0.38 -4.50 16 22 C 0.06 0.54 6.58 37.21 0.24 0.78 16 23 C -0.19 -1.85 4.67 -26.59 -0.12 -1.97 16 24 H 0.10 1.29 6.34 -51.93 -0.33 0.96 16 25 H 0.12 1.99 6.28 -51.93 -0.33 1.66 16 26 H 0.09 1.66 6.98 -51.93 -0.36 1.30 16 27 H 0.06 0.95 6.40 -51.93 -0.33 0.61 16 28 H 0.00 0.09 6.02 -51.93 -0.31 -0.23 16 29 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.41 4.49 -51.93 -0.23 0.17 16 32 H 0.07 1.00 6.29 -51.93 -0.33 0.67 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.88 6.52 -51.93 -0.34 0.55 16 35 H 0.33 2.76 5.69 -39.29 -0.22 2.54 16 36 H 0.34 3.23 7.03 -39.29 -0.28 2.95 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.42 6.82 -51.93 -0.35 0.07 16 41 H 0.04 0.36 6.81 -51.93 -0.35 0.01 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.79 6.63 -51.93 -0.34 0.45 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -28.65 337.61 -7.37 -36.02 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.58 Total: 3.88 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.89 Total: -5.93 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.42 Total: -50.33 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.38 Total: -4.50 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.65 -7.37 -36.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.736 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds