Wall clock time and date at job start Tue Mar 31 2020 05:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47046 * 299.99778 * 3 2 1 6 6 H 1.48494 * 109.47289 * 60.00113 * 3 2 1 7 7 C 1.38950 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99780 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99963 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99860 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00120 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.49026 * 111.00058 * 69.87438 * 13 12 10 15 15 C 1.55717 * 103.31797 * 162.26522 * 14 13 12 16 16 H 1.09001 * 109.74878 * 211.54835 * 15 14 13 17 17 C 1.51545 * 107.45098 * 92.26793 * 15 14 13 18 18 C 1.52172 * 112.92731 * 209.86735 * 17 15 14 19 19 C 1.53458 * 107.99116 * 58.78669 * 18 17 15 20 20 C 1.52518 * 107.58281 * 291.46120 * 19 18 17 21 21 C 1.49379 * 113.32879 * 54.69837 * 20 19 18 22 22 C 1.53002 * 105.79112 * 209.53717 * 21 20 19 23 23 N 1.46895 * 109.47551 * 307.65105 * 22 21 20 24 24 C 1.49351 * 111.20141 * 184.48385 * 13 12 10 25 25 H 0.96995 * 120.00053 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99764 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47526 * 59.99612 * 12 10 9 28 28 H 1.09001 * 109.46846 * 299.99428 * 12 10 9 29 29 H 1.09002 * 110.68059 * 43.75819 * 14 13 12 30 30 H 1.08999 * 110.67220 * 280.76628 * 14 13 12 31 31 H 1.08998 * 108.79391 * 330.78386 * 17 15 14 32 32 H 1.08998 * 108.79632 * 89.02449 * 17 15 14 33 33 H 1.08998 * 109.77952 * 299.15699 * 18 17 15 34 34 H 1.09002 * 109.80084 * 178.42586 * 18 17 15 35 35 H 1.08997 * 109.83101 * 171.94069 * 19 18 17 36 36 H 1.08996 * 109.83286 * 50.98000 * 19 18 17 37 37 H 1.08994 * 108.71382 * 293.69967 * 20 19 18 38 38 H 1.09003 * 108.70567 * 175.68903 * 20 19 18 39 39 H 1.09003 * 109.46682 * 67.64957 * 22 21 20 40 40 H 1.08995 * 109.47119 * 187.64588 * 22 21 20 41 41 H 1.00904 * 110.99916 * 56.04004 * 23 22 21 42 42 H 1.00898 * 111.00178 * 179.97438 * 23 22 21 43 43 H 1.09005 * 110.43535 * 84.30795 * 24 13 12 44 44 H 1.09001 * 110.53078 * 321.82822 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1984 -5.9795 0.0017 14 6 2.9083 -6.0743 1.3086 15 6 3.4904 -7.5185 1.2967 16 1 3.5298 -7.9082 2.3139 17 6 4.8913 -7.4392 0.7243 18 6 5.3058 -8.7078 -0.0067 19 6 4.3020 -8.9503 -1.1418 20 6 2.9659 -9.3178 -0.5046 21 6 2.4848 -8.3076 0.4851 22 6 1.6561 -9.0881 1.5073 23 7 0.6444 -9.8908 0.8073 24 6 1.4944 -7.2921 -0.1077 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6181 -4.9209 -0.8896 28 1 0.6162 -4.9205 0.8903 29 1 2.2101 -5.9475 2.1360 30 1 3.7091 -5.3370 1.3659 31 1 4.9396 -6.6012 0.0289 32 1 5.5935 -7.2584 1.5381 33 1 5.2930 -9.5518 0.6829 34 1 6.3069 -8.5854 -0.4202 35 1 4.6482 -9.7686 -1.7732 36 1 4.1910 -8.0441 -1.7372 37 1 3.0713 -10.2784 -0.0007 38 1 2.2191 -9.4190 -1.2922 39 1 2.3104 -9.7463 2.0789 40 1 1.1622 -8.3903 2.1835 41 1 1.0736 -10.5006 0.1275 42 1 0.0839 -10.4164 1.4613 43 1 1.2871 -7.5269 -1.1517 44 1 0.5701 -7.2795 0.4700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:24 Heat of formation + Delta-G solvation = -35.510400 kcal Electronic energy + Delta-G solvation = -23256.866232 eV Core-core repulsion = 20015.377838 eV Total energy + Delta-G solvation = -3241.488394 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69604 -38.08150 -35.53141 -34.92617 -33.76827 -31.62218 -31.11106 -30.60503 -27.04588 -26.83863 -24.58301 -24.38453 -22.26861 -21.19483 -20.76464 -19.15320 -18.32918 -17.72475 -16.21433 -15.86932 -15.31209 -15.00927 -14.77520 -14.71063 -14.45685 -14.08158 -13.87614 -13.72317 -13.47254 -13.35439 -12.66484 -12.32325 -12.02783 -11.82268 -11.72932 -11.52840 -11.46372 -11.30540 -11.13713 -10.90687 -10.83114 -10.65836 -10.30595 -10.16958 -10.10431 -9.95938 -9.88975 -9.44062 -8.83426 -8.37210 -7.91923 -7.83981 -6.36136 -3.76573 3.19860 3.29855 3.37258 3.99004 4.14573 4.27785 4.36745 4.56190 4.67229 4.74104 5.08787 5.12591 5.20183 5.24041 5.31015 5.34813 5.41242 5.44043 5.54125 5.60983 5.67223 5.83750 5.86200 5.91957 5.96984 5.99625 6.03239 6.10906 6.18547 6.25204 6.33720 6.34581 6.37372 6.46025 6.62394 6.69848 6.93376 7.20844 7.27619 7.39415 7.60583 8.13016 8.68832 9.24489 9.61809 10.14193 10.81995 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.003892 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.155964 B = 7193.001799 C = 7750.705910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.577 6.577 12 C 0.033 3.967 13 N -0.481 5.481 14 C 0.037 3.963 15 C -0.072 4.072 16 H 0.067 0.933 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.093 4.093 21 C -0.044 4.044 22 C 0.061 3.939 23 N -0.851 5.851 24 C 0.050 3.950 25 H 0.270 0.730 26 H 0.391 0.609 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.022 0.978 40 H 0.068 0.932 41 H 0.340 0.660 42 H 0.337 0.663 43 H 0.075 0.925 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -20.032 2.071 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.233 3.767 11 O -0.461 6.461 12 C -0.099 4.099 13 N -0.205 5.205 14 C -0.091 4.091 15 C -0.091 4.091 16 H 0.085 0.915 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.130 4.130 21 C -0.045 4.045 22 C -0.070 4.070 23 N -0.381 5.381 24 C -0.078 4.078 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.094 0.906 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.211 -19.048 1.376 19.366 hybrid contribution -0.580 -0.024 1.221 1.352 sum 2.631 -19.072 2.596 19.427 Atomic orbital electron populations 1.69625 1.05919 1.27919 1.51066 1.25244 0.95612 0.99641 0.97545 0.85819 0.79707 0.81280 0.77648 1.19254 1.20794 1.20842 1.19740 0.93343 0.82251 1.47210 0.87931 1.41878 1.09161 1.04604 1.64851 1.19747 0.88392 0.84517 0.84069 1.90492 1.13678 1.87026 1.54893 1.22043 0.94439 0.91941 1.01451 1.65683 1.23187 1.00518 1.31104 1.23740 0.99068 0.96432 0.89877 1.21186 0.94797 0.95153 0.97975 0.91466 1.21098 0.94641 0.98689 1.00243 1.21421 0.98465 0.97878 0.97442 1.21521 0.94743 1.01725 0.97558 1.20651 0.97761 0.96764 0.97840 1.19879 0.94701 0.94871 0.95056 1.22501 0.92919 0.96229 0.95384 1.58779 1.26838 1.32021 1.20463 1.23363 0.94877 0.88547 1.01012 0.92020 0.77554 0.89454 0.93539 0.94973 0.88186 0.90237 0.92755 0.92815 0.92214 0.92494 0.90823 0.93142 0.91491 0.95968 0.91325 0.84584 0.85093 0.90621 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 2 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.57 -14.77 5.29 -10.96 -0.06 -14.83 16 10 C 0.45 10.86 7.59 -10.99 -0.08 10.78 16 11 O -0.58 -15.79 14.38 5.55 0.08 -15.71 16 12 C 0.03 0.63 5.32 -4.98 -0.03 0.60 16 13 N -0.48 -8.35 5.10 -229.83 -1.17 -9.52 16 14 C 0.04 0.61 5.06 -1.19 -0.01 0.60 16 15 C -0.07 -0.92 2.79 -90.71 -0.25 -1.18 16 16 H 0.07 0.79 7.37 -51.93 -0.38 0.41 16 17 C -0.11 -1.41 5.09 -27.89 -0.14 -1.55 16 18 C -0.11 -1.23 5.97 -26.92 -0.16 -1.39 16 19 C -0.12 -1.26 6.06 -26.74 -0.16 -1.43 16 20 C -0.09 -0.94 3.59 -28.76 -0.10 -1.04 16 21 C -0.04 -0.51 0.80 -156.71 -0.13 -0.64 16 22 C 0.06 0.61 4.37 -3.83 -0.02 0.59 16 23 N -0.85 -7.45 9.09 -10.37 -0.09 -7.54 16 24 C 0.05 0.70 5.33 -2.08 -0.01 0.69 16 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.05 0.82 7.93 -51.93 -0.41 0.41 16 29 H 0.03 0.52 7.91 -51.93 -0.41 0.11 16 30 H 0.10 1.96 6.39 -51.93 -0.33 1.62 16 31 H 0.08 1.27 7.59 -51.93 -0.39 0.87 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.05 0.44 7.00 -51.93 -0.36 0.08 16 38 H 0.07 0.67 7.17 -51.93 -0.37 0.30 16 39 H 0.02 0.21 7.99 -51.93 -0.41 -0.21 16 40 H 0.07 0.77 7.78 -51.93 -0.40 0.36 16 41 H 0.34 2.62 6.88 -39.29 -0.27 2.35 16 42 H 0.34 2.41 9.08 -39.29 -0.36 2.05 16 43 H 0.08 1.06 7.47 -51.93 -0.39 0.67 16 44 H 0.05 0.72 7.03 -51.93 -0.36 0.36 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -30.73 334.67 -9.06 -39.80 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.23 Total: 12.76 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.33 Total: -2.03 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.60 Total: -56.22 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.73 -9.06 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.287 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds