Wall clock time and date at job start Tue Mar 31 2020 05:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47046 * 299.99778 * 3 2 1 6 6 H 1.48494 * 109.47289 * 60.00113 * 3 2 1 7 7 C 1.38950 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99780 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99963 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99860 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00120 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.49026 * 111.00058 * 69.87438 * 13 12 10 15 15 C 1.55717 * 103.31797 * 162.26522 * 14 13 12 16 16 H 1.09001 * 109.74878 * 211.54835 * 15 14 13 17 17 C 1.51545 * 107.45098 * 92.26793 * 15 14 13 18 18 C 1.52172 * 112.92731 * 209.86735 * 17 15 14 19 19 C 1.53458 * 107.99116 * 58.78669 * 18 17 15 20 20 C 1.52518 * 107.58281 * 291.46120 * 19 18 17 21 21 C 1.49379 * 113.32879 * 54.69837 * 20 19 18 22 22 C 1.53002 * 105.79112 * 209.53717 * 21 20 19 23 23 N 1.46895 * 109.47551 * 307.65105 * 22 21 20 24 24 C 1.49351 * 111.20141 * 184.48385 * 13 12 10 25 25 H 0.96995 * 120.00053 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99764 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47526 * 59.99612 * 12 10 9 28 28 H 1.09001 * 109.46846 * 299.99428 * 12 10 9 29 29 H 1.09002 * 110.68059 * 43.75819 * 14 13 12 30 30 H 1.08999 * 110.67220 * 280.76628 * 14 13 12 31 31 H 1.08998 * 108.79391 * 330.78386 * 17 15 14 32 32 H 1.08998 * 108.79632 * 89.02449 * 17 15 14 33 33 H 1.08998 * 109.77952 * 299.15699 * 18 17 15 34 34 H 1.09002 * 109.80084 * 178.42586 * 18 17 15 35 35 H 1.08997 * 109.83101 * 171.94069 * 19 18 17 36 36 H 1.08996 * 109.83286 * 50.98000 * 19 18 17 37 37 H 1.08994 * 108.71382 * 293.69967 * 20 19 18 38 38 H 1.09003 * 108.70567 * 175.68903 * 20 19 18 39 39 H 1.09003 * 109.46682 * 67.64957 * 22 21 20 40 40 H 1.08995 * 109.47119 * 187.64588 * 22 21 20 41 41 H 1.00904 * 110.99916 * 56.04004 * 23 22 21 42 42 H 1.00898 * 111.00178 * 179.97438 * 23 22 21 43 43 H 1.09005 * 110.43535 * 84.30795 * 24 13 12 44 44 H 1.09001 * 110.53078 * 321.82822 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1984 -5.9795 0.0017 14 6 2.9083 -6.0743 1.3086 15 6 3.4904 -7.5185 1.2967 16 1 3.5298 -7.9082 2.3139 17 6 4.8913 -7.4392 0.7243 18 6 5.3058 -8.7078 -0.0067 19 6 4.3020 -8.9503 -1.1418 20 6 2.9659 -9.3178 -0.5046 21 6 2.4848 -8.3076 0.4851 22 6 1.6561 -9.0881 1.5073 23 7 0.6444 -9.8908 0.8073 24 6 1.4944 -7.2921 -0.1077 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6181 -4.9209 -0.8896 28 1 0.6162 -4.9205 0.8903 29 1 2.2101 -5.9475 2.1360 30 1 3.7091 -5.3370 1.3659 31 1 4.9396 -6.6012 0.0289 32 1 5.5935 -7.2584 1.5381 33 1 5.2930 -9.5518 0.6829 34 1 6.3069 -8.5854 -0.4202 35 1 4.6482 -9.7686 -1.7732 36 1 4.1910 -8.0441 -1.7372 37 1 3.0713 -10.2784 -0.0007 38 1 2.2191 -9.4190 -1.2922 39 1 2.3104 -9.7463 2.0789 40 1 1.1622 -8.3903 2.1835 41 1 1.0736 -10.5006 0.1275 42 1 0.0839 -10.4164 1.4613 43 1 1.2871 -7.5269 -1.1517 44 1 0.5701 -7.2795 0.4700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:23 Heat of formation + Delta-G solvation = -59.119849 kcal Electronic energy + Delta-G solvation = -23257.890015 eV Core-core repulsion = 20015.377838 eV Total energy + Delta-G solvation = -3242.512177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76811 -39.97590 -36.84739 -35.87002 -35.70238 -33.31855 -32.60155 -31.59248 -28.59837 -27.92776 -26.36665 -25.35263 -23.44404 -22.38083 -21.74285 -20.98097 -19.91425 -19.30688 -17.68257 -17.02403 -16.68315 -16.40241 -16.25027 -15.85864 -15.60010 -15.51732 -15.33824 -15.01200 -14.60240 -14.51580 -14.00031 -13.90942 -13.50883 -13.10573 -13.01786 -12.88783 -12.72094 -12.59755 -12.47216 -12.40172 -12.15208 -12.11154 -11.88739 -11.67365 -11.48964 -11.12891 -10.88409 -10.83233 -10.28177 -10.00783 -9.50081 -9.29277 -8.46737 -5.95525 1.35881 1.40516 1.55168 2.05322 2.28488 2.88274 3.19601 3.34442 3.50219 3.58898 3.70811 3.98135 4.13745 4.23100 4.26134 4.28839 4.34845 4.41687 4.48086 4.51822 4.55521 4.61668 4.72520 4.79081 4.79943 4.88722 5.01408 5.06301 5.12212 5.17038 5.19199 5.35442 5.40297 5.40931 5.45269 5.60345 5.67417 5.89497 5.96218 6.12716 6.30424 6.60839 6.68700 7.12974 7.56169 8.12436 8.71270 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029216 B = 0.003892 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.155964 B = 7193.001799 C = 7750.705910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.613 6.613 12 C 0.046 3.954 13 N -0.502 5.502 14 C 0.036 3.964 15 C -0.062 4.062 16 H 0.087 0.913 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.118 4.118 20 C -0.090 4.090 21 C -0.041 4.041 22 C 0.068 3.932 23 N -0.856 5.856 24 C 0.054 3.946 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.349 0.651 42 H 0.348 0.652 43 H 0.076 0.924 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -22.013 2.375 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.499 6.499 12 C -0.086 4.086 13 N -0.226 5.226 14 C -0.092 4.092 15 C -0.081 4.081 16 H 0.105 0.895 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.127 4.127 21 C -0.042 4.042 22 C -0.063 4.063 23 N -0.388 5.388 24 C -0.073 4.073 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.094 0.906 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.696 -21.056 1.678 21.294 hybrid contribution -0.425 0.591 1.114 1.331 sum 2.271 -20.464 2.792 20.778 Atomic orbital electron populations 1.69687 1.06864 1.29199 1.50601 1.26044 0.96541 1.02390 0.96326 0.84865 0.77984 0.77064 0.78378 1.19844 1.19533 1.19498 1.19689 0.92625 0.83990 1.49769 0.90423 1.41946 1.09243 1.04730 1.65492 1.20714 0.88286 0.85823 0.82080 1.90470 1.15602 1.87831 1.55996 1.21898 0.94191 0.89636 1.02910 1.65636 1.23625 1.01551 1.31762 1.23646 0.97976 0.97984 0.89614 1.21175 0.94687 0.92859 0.99414 0.89509 1.21052 0.95106 0.98642 0.99692 1.21403 0.98605 0.97077 0.97581 1.21510 0.95369 1.01123 0.97521 1.20646 0.97297 0.97122 0.97664 1.19849 0.93982 0.94629 0.95784 1.22322 0.93087 0.96234 0.94651 1.58715 1.26657 1.32541 1.20931 1.23420 0.95375 0.87160 1.01311 0.91321 0.77150 0.87833 0.91917 0.94904 0.92244 0.94319 0.92383 0.90649 0.91897 0.90393 0.93813 0.90648 0.91048 0.94398 0.92495 0.83661 0.83841 0.90585 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.10 13.05 21.66 0.28 -50.81 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 44.02 29.55 68.60 2.03 46.05 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.58 -31.00 5.29 -306.99 -1.62 -32.63 16 10 C 0.44 22.39 7.59 87.66 0.66 23.06 16 11 O -0.61 -35.43 14.38 -3.07 -0.04 -35.48 16 12 C 0.05 1.74 5.32 85.56 0.46 2.20 16 13 N -0.50 -17.67 5.10 -881.04 -4.49 -22.17 16 14 C 0.04 1.22 5.06 86.83 0.44 1.66 16 15 C -0.06 -1.55 2.79 -10.85 -0.03 -1.58 16 16 H 0.09 1.85 7.37 -2.39 -0.02 1.83 16 17 C -0.11 -2.77 5.09 29.84 0.15 -2.62 16 18 C -0.11 -2.15 5.97 30.47 0.18 -1.97 16 19 C -0.12 -2.30 6.06 30.59 0.19 -2.12 16 20 C -0.09 -1.55 3.59 29.28 0.11 -1.45 16 21 C -0.04 -0.88 0.80 -53.61 -0.04 -0.92 16 22 C 0.07 1.17 4.37 86.30 0.38 1.54 16 23 N -0.86 -12.19 9.09 -186.73 -1.70 -13.89 16 24 C 0.05 1.46 5.33 86.07 0.46 1.92 16 25 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.39 20.25 7.90 -92.71 -0.73 19.52 16 27 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 28 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 29 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 30 H 0.06 2.49 6.39 -2.39 -0.02 2.48 16 31 H 0.04 1.31 7.59 -2.39 -0.02 1.29 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.04 1.12 8.11 -2.39 -0.02 1.10 16 37 H 0.08 0.98 7.00 -2.39 -0.02 0.97 16 38 H 0.07 1.21 7.17 -2.39 -0.02 1.20 16 39 H 0.04 0.56 7.99 -2.39 -0.02 0.54 16 40 H 0.06 1.13 7.78 -2.39 -0.02 1.11 16 41 H 0.35 4.06 6.88 -89.69 -0.62 3.44 16 42 H 0.35 3.83 9.08 -89.70 -0.81 3.02 16 43 H 0.08 2.03 7.47 -2.38 -0.02 2.01 16 44 H 0.05 1.42 7.03 -2.39 -0.02 1.40 16 Total: -1.00 -68.56 334.67 -2.47 -71.03 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -1.14 Total: 37.08 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 4.23 Total: 0.81 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -7.53 Total: -119.49 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.04 Total: -35.48 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -68.56 -2.47 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.905 kcal (2) G-P(sol) polarization free energy of solvation -68.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds