Wall clock time and date at job start Tue Mar 31 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00267 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99757 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00364 * 3 2 1 7 7 C 1.38950 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99692 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00121 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99639 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00336 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47252 * 179.97438 * 12 10 9 14 14 C 1.48495 * 110.99795 * 69.87248 * 13 12 10 15 15 C 1.55431 * 105.20753 * 155.98679 * 14 13 12 16 16 H 1.09008 * 109.53267 * 99.84306 * 15 14 13 17 17 C 1.51551 * 107.55388 * 218.13253 * 15 14 13 18 18 C 1.51072 * 113.58221 * 148.62373 * 17 15 14 19 19 C 1.53484 * 108.48608 * 302.72537 * 18 17 15 20 20 C 1.52541 * 107.50153 * 68.33087 * 19 18 17 21 21 C 1.49318 * 113.34524 * 305.63297 * 20 19 18 22 22 C 1.53008 * 105.81781 * 149.24955 * 21 20 19 23 23 N 1.46892 * 109.47017 * 51.94046 * 22 21 20 24 24 C 1.49000 * 111.00209 * 185.47837 * 13 12 10 25 25 H 0.97000 * 120.00151 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00453 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.47246 * 300.00016 * 12 10 9 28 28 H 1.08997 * 109.47440 * 59.99949 * 12 10 9 29 29 H 1.08997 * 110.29553 * 274.91755 * 14 13 12 30 30 H 1.09001 * 110.29575 * 37.05495 * 14 13 12 31 31 H 1.09002 * 108.79427 * 271.08190 * 17 15 14 32 32 H 1.09003 * 108.79080 * 29.31014 * 17 15 14 33 33 H 1.09003 * 109.97715 * 182.66862 * 18 17 15 34 34 H 1.08992 * 109.06450 * 62.25037 * 18 17 15 35 35 H 1.08998 * 109.85371 * 308.83036 * 19 18 17 36 36 H 1.08993 * 109.85113 * 187.83101 * 19 18 17 37 37 H 1.09000 * 108.70426 * 184.63485 * 20 19 18 38 38 H 1.09005 * 108.60819 * 66.56192 * 20 19 18 39 39 H 1.08999 * 109.47137 * 171.93958 * 22 21 20 40 40 H 1.08993 * 109.46922 * 291.93859 * 22 21 20 41 41 H 1.00904 * 111.00051 * 179.97438 * 23 22 21 42 42 H 1.00900 * 111.00190 * 303.95935 * 23 22 21 43 43 H 1.09004 * 110.69467 * 318.40468 * 24 13 12 44 44 H 1.09000 * 110.69034 * 81.59700 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 2.9068 -6.0745 1.3000 15 6 3.3684 -7.5549 1.4058 16 1 4.4205 -7.6291 1.1303 17 6 3.2064 -7.9820 2.8508 18 6 2.8779 -9.4475 3.0147 19 6 1.5942 -9.7492 2.2293 20 6 1.9215 -9.6132 0.7456 21 6 2.5261 -8.2946 0.3915 22 6 3.4563 -8.5669 -0.7924 23 7 2.7194 -9.2889 -1.8381 24 6 1.4930 -7.2851 -0.1350 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6168 -4.9209 0.8886 28 1 0.6175 -4.9205 -0.8913 29 1 3.7691 -5.4079 1.3107 30 1 2.2290 -5.8304 2.1180 31 1 4.1241 -7.7489 3.3909 32 1 2.3871 -7.4162 3.2945 33 1 2.7282 -9.6799 4.0691 34 1 3.7006 -10.0431 2.6192 35 1 0.8163 -9.0367 2.5036 36 1 1.2596 -10.7642 2.4430 37 1 1.0037 -9.7423 0.1720 38 1 2.6196 -10.4035 0.4696 39 1 3.8216 -7.6210 -1.1925 40 1 4.3004 -9.1709 -0.4599 41 1 3.3123 -9.4803 -2.6318 42 1 2.3156 -10.1391 -1.4745 43 1 0.5920 -7.3006 0.4784 44 1 1.2530 -7.4883 -1.1787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:26 Heat of formation + Delta-G solvation = -34.893942 kcal Electronic energy + Delta-G solvation = -23229.242063 eV Core-core repulsion = 19987.780401 eV Total energy + Delta-G solvation = -3241.461662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79962 -38.24689 -35.79368 -34.93904 -34.10358 -31.74197 -31.03971 -30.60277 -27.07273 -26.92226 -24.59518 -24.23607 -22.37123 -21.33839 -20.84715 -19.41337 -18.33490 -17.81867 -16.48618 -16.19338 -15.49316 -15.10247 -14.87227 -14.58356 -14.43753 -14.31172 -13.94859 -13.66941 -13.63563 -13.15435 -12.94014 -12.63964 -12.22673 -12.11600 -11.88128 -11.49219 -11.24794 -11.15754 -11.09898 -10.99288 -10.83897 -10.76879 -10.27421 -10.18602 -10.06947 -10.04678 -9.80674 -9.46781 -8.69715 -8.44588 -7.98327 -7.90228 -6.69664 -3.82248 3.34496 3.38366 3.57676 3.92413 4.09756 4.33846 4.38326 4.44409 4.62813 4.72071 4.88240 4.97546 5.03266 5.14034 5.23052 5.29422 5.33374 5.40022 5.49540 5.54294 5.61819 5.70737 5.79487 5.83072 5.85611 5.90589 5.94028 5.98156 6.05746 6.08394 6.09777 6.14473 6.29333 6.30742 6.48337 6.55622 7.07166 7.22222 7.29277 7.36485 7.87704 8.14319 8.67443 8.87844 9.54759 9.96760 10.74109 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.003741 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.356060 B = 7482.450272 C = 7749.002162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.011 4.011 3 Si 1.093 2.907 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.579 5.579 10 C 0.449 3.551 11 O -0.571 6.571 12 C 0.036 3.964 13 N -0.484 5.484 14 C 0.041 3.959 15 C -0.078 4.078 16 H 0.076 0.924 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.098 4.098 21 C -0.048 4.048 22 C 0.066 3.934 23 N -0.850 5.850 24 C 0.045 3.955 25 H 0.261 0.739 26 H 0.375 0.625 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.017 0.983 41 H 0.338 0.662 42 H 0.334 0.666 43 H 0.033 0.967 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 -20.902 3.147 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.213 4.213 3 Si 0.920 3.080 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.509 4.509 8 H 0.116 0.884 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.454 6.454 12 C -0.096 4.096 13 N -0.207 5.207 14 C -0.087 4.087 15 C -0.097 4.097 16 H 0.094 0.906 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.136 4.136 21 C -0.048 4.048 22 C -0.064 4.064 23 N -0.380 5.380 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.207 0.793 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.051 0.949 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.527 -18.438 2.636 18.797 hybrid contribution -0.355 -2.509 0.817 2.663 sum 2.173 -20.948 3.453 21.341 Atomic orbital electron populations 1.70865 1.06516 1.29370 1.47622 1.26478 0.96563 1.02568 0.95676 0.83096 0.74389 0.73486 0.77057 1.21206 1.20956 1.20680 1.20550 0.94626 0.83884 1.51846 0.88375 1.41943 1.08126 1.05547 1.66181 1.19678 0.88425 0.84272 0.84115 1.90502 1.13619 1.86893 1.54398 1.22037 0.94370 0.91870 1.01361 1.65188 1.23475 1.00640 1.31385 1.23596 0.99736 0.95414 0.89910 1.21146 0.99772 0.94923 0.93855 0.90581 1.21008 1.01807 0.96352 0.95904 1.21243 0.97692 0.96685 0.99753 1.21546 0.97671 1.01100 0.95278 1.20669 1.00726 0.95762 0.96479 1.19776 0.95775 0.94571 0.94727 1.22341 0.93336 0.98954 0.91814 1.58764 1.40106 1.28686 1.10473 1.23329 0.94337 0.88599 1.01986 0.92773 0.79250 0.93612 0.89437 0.88808 0.94461 0.91910 0.92405 0.92041 0.92261 0.91864 0.91994 0.91376 0.92574 0.89395 0.96467 0.84954 0.85243 0.94887 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.68 55.50 0.76 -25.10 16 2 C -0.01 -0.30 5.50 -17.47 -0.10 -0.40 16 3 Si 1.09 24.83 29.92 -169.99 -5.09 19.74 16 4 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.38 -10.93 9.68 -14.93 -0.14 -11.07 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.58 -15.05 5.28 -10.96 -0.06 -15.11 16 10 C 0.45 11.02 7.58 -10.99 -0.08 10.93 16 11 O -0.57 -15.94 14.47 5.54 0.08 -15.86 16 12 C 0.04 0.67 5.31 -4.98 -0.03 0.65 16 13 N -0.48 -8.44 4.66 -230.79 -1.08 -9.52 16 14 C 0.04 0.69 5.30 -1.65 -0.01 0.68 16 15 C -0.08 -0.99 2.82 -90.98 -0.26 -1.25 16 16 H 0.08 0.99 7.35 -51.92 -0.38 0.61 16 17 C -0.11 -1.23 5.22 -28.43 -0.15 -1.38 16 18 C -0.12 -1.05 5.91 -27.45 -0.16 -1.21 16 19 C -0.12 -1.04 6.08 -26.72 -0.16 -1.21 16 20 C -0.10 -0.91 3.62 -28.78 -0.10 -1.02 16 21 C -0.05 -0.55 0.78 -156.84 -0.12 -0.68 16 22 C 0.07 0.77 4.55 -3.82 -0.02 0.75 16 23 N -0.85 -8.42 8.61 -10.37 -0.09 -8.51 16 24 C 0.05 0.63 5.03 -2.27 -0.01 0.62 16 25 H 0.26 7.20 6.78 -40.82 -0.28 6.92 16 26 H 0.37 9.03 6.73 -40.82 -0.27 8.75 16 27 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 28 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 29 H 0.09 1.85 7.01 -51.93 -0.36 1.48 16 30 H 0.04 0.62 6.78 -51.93 -0.35 0.27 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.62 7.57 -51.93 -0.39 0.23 16 38 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 39 H 0.09 1.30 7.72 -51.93 -0.40 0.89 16 40 H 0.02 0.19 8.01 -51.93 -0.42 -0.23 16 41 H 0.34 2.92 9.08 -39.29 -0.36 2.57 16 42 H 0.33 2.75 6.86 -39.29 -0.27 2.48 16 43 H 0.03 0.45 8.02 -51.93 -0.42 0.03 16 44 H 0.10 1.43 7.11 -51.93 -0.37 1.06 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -32.33 332.18 -8.92 -41.25 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.11 Total: 12.65 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.34 Total: -4.56 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.46 Total: -58.23 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.08 Total: -15.86 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.74 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.33 -8.92 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.360 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds