Wall clock time and date at job start Tue Mar 31 2020 05:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00267 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99757 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00364 * 3 2 1 7 7 C 1.38950 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99692 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00121 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99639 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00336 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47252 * 179.97438 * 12 10 9 14 14 C 1.48495 * 110.99795 * 69.87248 * 13 12 10 15 15 C 1.55431 * 105.20753 * 155.98679 * 14 13 12 16 16 H 1.09008 * 109.53267 * 99.84306 * 15 14 13 17 17 C 1.51551 * 107.55388 * 218.13253 * 15 14 13 18 18 C 1.51072 * 113.58221 * 148.62373 * 17 15 14 19 19 C 1.53484 * 108.48608 * 302.72537 * 18 17 15 20 20 C 1.52541 * 107.50153 * 68.33087 * 19 18 17 21 21 C 1.49318 * 113.34524 * 305.63297 * 20 19 18 22 22 C 1.53008 * 105.81781 * 149.24955 * 21 20 19 23 23 N 1.46892 * 109.47017 * 51.94046 * 22 21 20 24 24 C 1.49000 * 111.00209 * 185.47837 * 13 12 10 25 25 H 0.97000 * 120.00151 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00453 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.47246 * 300.00016 * 12 10 9 28 28 H 1.08997 * 109.47440 * 59.99949 * 12 10 9 29 29 H 1.08997 * 110.29553 * 274.91755 * 14 13 12 30 30 H 1.09001 * 110.29575 * 37.05495 * 14 13 12 31 31 H 1.09002 * 108.79427 * 271.08190 * 17 15 14 32 32 H 1.09003 * 108.79080 * 29.31014 * 17 15 14 33 33 H 1.09003 * 109.97715 * 182.66862 * 18 17 15 34 34 H 1.08992 * 109.06450 * 62.25037 * 18 17 15 35 35 H 1.08998 * 109.85371 * 308.83036 * 19 18 17 36 36 H 1.08993 * 109.85113 * 187.83101 * 19 18 17 37 37 H 1.09000 * 108.70426 * 184.63485 * 20 19 18 38 38 H 1.09005 * 108.60819 * 66.56192 * 20 19 18 39 39 H 1.08999 * 109.47137 * 171.93958 * 22 21 20 40 40 H 1.08993 * 109.46922 * 291.93859 * 22 21 20 41 41 H 1.00904 * 111.00051 * 179.97438 * 23 22 21 42 42 H 1.00900 * 111.00190 * 303.95935 * 23 22 21 43 43 H 1.09004 * 110.69467 * 318.40468 * 24 13 12 44 44 H 1.09000 * 110.69034 * 81.59700 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 2.9068 -6.0745 1.3000 15 6 3.3684 -7.5549 1.4058 16 1 4.4205 -7.6291 1.1303 17 6 3.2064 -7.9820 2.8508 18 6 2.8779 -9.4475 3.0147 19 6 1.5942 -9.7492 2.2293 20 6 1.9215 -9.6132 0.7456 21 6 2.5261 -8.2946 0.3915 22 6 3.4563 -8.5669 -0.7924 23 7 2.7194 -9.2889 -1.8381 24 6 1.4930 -7.2851 -0.1350 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6168 -4.9209 0.8886 28 1 0.6175 -4.9205 -0.8913 29 1 3.7691 -5.4079 1.3107 30 1 2.2290 -5.8304 2.1180 31 1 4.1241 -7.7489 3.3909 32 1 2.3871 -7.4162 3.2945 33 1 2.7282 -9.6799 4.0691 34 1 3.7006 -10.0431 2.6192 35 1 0.8163 -9.0367 2.5036 36 1 1.2596 -10.7642 2.4430 37 1 1.0037 -9.7423 0.1720 38 1 2.6196 -10.4035 0.4696 39 1 3.8216 -7.6210 -1.1925 40 1 4.3004 -9.1709 -0.4599 41 1 3.3123 -9.4803 -2.6318 42 1 2.3156 -10.1391 -1.4745 43 1 0.5920 -7.3006 0.4784 44 1 1.2530 -7.4883 -1.1787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:25 Heat of formation + Delta-G solvation = -59.431792 kcal Electronic energy + Delta-G solvation = -23230.306104 eV Core-core repulsion = 19987.780401 eV Total energy + Delta-G solvation = -3242.525703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87061 -40.16666 -37.09254 -36.19078 -35.78016 -33.24457 -32.62431 -31.66258 -28.52014 -28.06399 -26.21870 -25.47164 -23.49778 -22.52992 -21.79867 -21.27011 -19.95573 -19.28579 -18.13594 -17.22513 -16.99941 -16.45433 -16.21648 -16.08503 -15.53700 -15.50051 -15.18281 -15.04005 -14.93070 -14.49251 -14.14697 -13.87737 -13.46146 -13.36394 -13.19211 -12.89421 -12.81923 -12.55641 -12.39318 -12.09238 -11.94890 -11.92815 -11.88239 -11.77545 -11.51495 -11.21402 -10.94251 -10.90774 -10.38008 -10.11092 -9.51280 -9.35907 -8.93968 -6.07400 1.50895 1.53641 1.81302 1.99823 2.38730 2.74846 3.14941 3.24206 3.38120 3.53843 3.71879 3.93373 4.01229 4.08524 4.12761 4.21601 4.25510 4.34406 4.36252 4.42718 4.49451 4.60759 4.66977 4.67820 4.80610 4.92375 4.95924 5.03125 5.08961 5.14931 5.17954 5.21711 5.34342 5.38892 5.53313 5.54587 5.58521 5.89785 5.95282 6.00476 6.29398 6.57260 6.68956 6.74717 7.43299 7.92628 8.53855 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.003741 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.356060 B = 7482.450272 C = 7749.002162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.042 4.042 3 Si 1.136 2.864 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.409 4.409 8 H 0.071 0.929 9 N -0.589 5.589 10 C 0.447 3.553 11 O -0.610 6.610 12 C 0.048 3.952 13 N -0.505 5.505 14 C 0.042 3.958 15 C -0.067 4.067 16 H 0.070 0.930 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.095 4.095 21 C -0.039 4.039 22 C 0.073 3.927 23 N -0.853 5.853 24 C 0.050 3.950 25 H 0.259 0.741 26 H 0.383 0.617 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.029 0.971 41 H 0.346 0.654 42 H 0.348 0.652 43 H 0.043 0.957 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 -22.975 3.524 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.240 4.240 3 Si 0.956 3.044 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.089 0.911 9 N -0.228 5.228 10 C 0.234 3.766 11 O -0.495 6.495 12 C -0.084 4.084 13 N -0.229 5.229 14 C -0.086 4.086 15 C -0.087 4.087 16 H 0.089 0.911 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.133 4.133 21 C -0.040 4.040 22 C -0.058 4.058 23 N -0.385 5.385 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.217 0.783 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.061 0.939 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.752 -20.556 3.013 20.849 hybrid contribution -0.099 -1.902 0.673 2.020 sum 1.653 -22.458 3.686 22.818 Atomic orbital electron populations 1.70938 1.06974 1.29451 1.48306 1.27841 0.96689 1.05289 0.94179 0.82593 0.73604 0.70148 0.78056 1.19516 1.20369 1.19602 1.20532 0.93816 0.85649 1.53823 0.91051 1.41995 1.08532 1.05481 1.66819 1.20727 0.88317 0.85684 0.81853 1.90480 1.15703 1.87769 1.55531 1.21906 0.94098 0.89313 1.03087 1.65125 1.24046 1.01760 1.31958 1.23506 0.98108 0.97422 0.89558 1.21089 0.99566 0.92360 0.95678 0.91136 1.20987 1.01631 0.98069 0.94199 1.21235 0.98153 0.94781 1.00783 1.21557 0.97174 1.02114 0.94565 1.20646 1.01239 0.94194 0.97189 1.19757 0.94910 0.95172 0.94168 1.22141 0.93877 0.97730 0.92079 1.58683 1.40111 1.29431 1.10288 1.23360 0.95063 0.87104 1.02214 0.93044 0.78259 0.91674 0.87563 0.92986 0.94771 0.91774 0.93287 0.90769 0.91456 0.92776 0.89864 0.90594 0.90950 0.93070 0.95329 0.84082 0.83735 0.93899 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.43 13.68 21.66 0.30 -52.13 16 2 C -0.04 -2.34 5.50 84.93 0.47 -1.88 16 3 Si 1.14 49.85 29.92 68.60 2.05 51.90 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.41 -24.20 9.68 84.04 0.81 -23.39 16 8 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.59 -31.37 5.28 -306.98 -1.62 -32.99 16 10 C 0.45 22.54 7.58 87.66 0.66 23.21 16 11 O -0.61 -35.62 14.47 -3.10 -0.04 -35.66 16 12 C 0.05 1.80 5.31 85.56 0.45 2.26 16 13 N -0.51 -17.78 4.66 -884.08 -4.12 -21.91 16 14 C 0.04 1.45 5.30 86.83 0.46 1.91 16 15 C -0.07 -1.69 2.82 -11.03 -0.03 -1.72 16 16 H 0.07 1.84 7.35 -2.38 -0.02 1.82 16 17 C -0.11 -2.28 5.22 29.49 0.15 -2.13 16 18 C -0.11 -1.68 5.91 30.13 0.18 -1.50 16 19 C -0.12 -1.65 6.08 30.60 0.19 -1.46 16 20 C -0.09 -1.44 3.62 29.27 0.11 -1.34 16 21 C -0.04 -0.85 0.78 -53.69 -0.04 -0.89 16 22 C 0.07 1.60 4.55 86.31 0.39 1.99 16 23 N -0.85 -15.10 8.61 -186.73 -1.61 -16.71 16 24 C 0.05 1.32 5.03 86.15 0.43 1.75 16 25 H 0.26 14.36 6.78 -92.71 -0.63 13.73 16 26 H 0.38 18.80 6.73 -92.71 -0.62 18.17 16 27 H 0.07 2.22 7.86 -2.38 -0.02 2.20 16 28 H 0.11 3.61 8.13 -2.39 -0.02 3.59 16 29 H 0.05 2.19 7.01 -2.39 -0.02 2.18 16 30 H 0.03 1.16 6.78 -2.39 -0.02 1.15 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.09 7.13 -2.39 -0.02 1.08 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 35 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.09 7.57 -2.39 -0.02 1.07 16 38 H 0.07 0.91 6.92 -2.38 -0.02 0.90 16 39 H 0.05 1.52 7.72 -2.39 -0.02 1.50 16 40 H 0.03 0.57 8.01 -2.39 -0.02 0.55 16 41 H 0.35 5.35 9.08 -89.69 -0.81 4.54 16 42 H 0.35 4.62 6.86 -89.69 -0.62 4.01 16 43 H 0.04 1.07 8.02 -2.39 -0.02 1.05 16 44 H 0.10 2.65 7.11 -2.39 -0.02 2.63 16 Total: -1.00 -71.72 332.18 -1.70 -73.42 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.89 Total: 37.26 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.24 Total: -3.18 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -7.06 Total: -123.74 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.04 Total: -35.66 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -71.72 -1.70 -73.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.988 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds