Wall clock time and date at job start Tue Mar 31 2020 05:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99798 * 3 2 1 5 5 H 1.48504 * 109.46757 * 29.99785 * 3 2 1 6 6 H 1.48492 * 109.47185 * 149.99581 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.49067 * 111.00436 * 290.50324 * 13 12 10 15 15 C 1.53072 * 103.41734 * 213.55274 * 14 13 12 16 16 H 1.08998 * 111.33613 * 284.02407 * 15 14 13 17 17 C 1.51632 * 116.62211 * 155.97311 * 15 14 13 18 18 C 1.53817 * 107.03023 * 183.68363 * 17 15 14 19 19 C 1.52532 * 111.68914 * 57.55124 * 18 17 15 20 20 C 1.53840 * 111.65195 * 305.91343 * 19 18 17 21 21 C 1.51450 * 107.05349 * 57.21669 * 20 19 18 22 22 C 1.52997 * 109.87082 * 54.71022 * 21 20 19 23 23 N 1.46900 * 109.47094 * 69.14858 * 22 21 20 24 24 C 1.48653 * 111.00084 * 169.99970 * 13 12 10 25 25 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 27 27 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 28 28 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 29 29 H 1.09007 * 110.62930 * 332.03627 * 14 13 12 30 30 H 1.09000 * 110.63051 * 95.06401 * 14 13 12 31 31 H 1.08993 * 109.94544 * 64.30330 * 17 15 14 32 32 H 1.09004 * 110.01090 * 303.10251 * 17 15 14 33 33 H 1.08997 * 109.03491 * 296.98039 * 18 17 15 34 34 H 1.08992 * 109.03273 * 178.11512 * 18 17 15 35 35 H 1.08996 * 109.04384 * 185.35329 * 19 18 17 36 36 H 1.09001 * 108.98697 * 66.43575 * 19 18 17 37 37 H 1.09000 * 109.93398 * 297.83102 * 20 19 18 38 38 H 1.09000 * 110.00681 * 176.63900 * 20 19 18 39 39 H 1.08997 * 109.47730 * 189.15056 * 22 21 20 40 40 H 1.09001 * 109.46982 * 309.14620 * 22 21 20 41 41 H 1.00892 * 111.00094 * 56.05085 * 23 22 21 42 42 H 1.00903 * 110.99849 * 180.02562 * 23 22 21 43 43 H 1.08998 * 110.17656 * 237.98960 * 24 13 12 44 44 H 1.09005 * 110.17167 * 359.79939 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 2.9159 -6.0751 -1.2782 15 6 3.1354 -7.5799 -1.4532 16 1 3.9417 -7.9400 -0.8141 17 6 3.3200 -8.0791 -2.8730 18 6 3.4274 -9.6118 -2.8013 19 6 2.1998 -10.2327 -2.1423 20 6 1.9244 -9.6158 -0.7602 21 6 1.7621 -8.1238 -0.9642 22 6 0.6812 -7.8569 -2.0136 23 7 -0.6320 -8.2270 -1.4690 24 6 1.5056 -7.2713 0.2720 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0068 27 1 0.6167 -4.9161 0.9093 28 1 0.6173 -4.9251 -0.8706 29 1 2.2997 -5.6804 -2.0861 30 1 3.8703 -5.5507 -1.2304 31 1 4.2328 -7.6620 -3.2981 32 1 2.4624 -7.7946 -3.4828 33 1 4.3135 -9.8796 -2.2258 34 1 3.5276 -10.0088 -3.8114 35 1 2.3616 -11.3045 -2.0275 36 1 1.3332 -10.0707 -2.7832 37 1 2.7635 -9.8105 -0.0924 38 1 1.0101 -10.0350 -0.3401 39 1 0.6812 -6.7986 -2.2743 40 1 0.8855 -8.4506 -2.9046 41 1 -0.8169 -7.7371 -0.6066 42 1 -1.3633 -8.0603 -2.1439 43 1 1.9194 -7.7566 1.1559 44 1 0.4357 -7.1059 0.3993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:29 Heat of formation + Delta-G solvation = -31.115287 kcal Electronic energy + Delta-G solvation = -23365.494488 eV Core-core repulsion = 20124.196681 eV Total energy + Delta-G solvation = -3241.297808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02338 -38.14460 -35.85635 -34.20327 -33.79261 -31.41872 -31.15108 -30.67954 -27.25617 -26.99222 -24.96247 -24.44186 -22.32440 -21.19221 -20.57168 -19.14679 -18.24641 -17.84423 -16.42228 -16.21316 -15.58830 -15.32740 -14.75642 -14.53863 -14.33448 -14.07551 -13.83296 -13.64992 -13.46723 -13.12031 -12.66361 -12.56421 -12.41278 -11.96340 -11.87236 -11.70416 -11.51562 -11.39318 -11.18513 -11.02706 -10.98577 -10.70436 -10.38223 -10.20221 -10.19667 -10.06891 -9.76195 -9.47092 -8.75231 -8.41203 -7.94596 -7.81259 -6.39897 -3.80461 3.18704 3.27057 3.33337 3.93440 4.04626 4.19144 4.27634 4.58188 4.59503 4.68252 4.93284 5.10058 5.12284 5.17888 5.22802 5.28073 5.33334 5.44337 5.49986 5.58237 5.58898 5.66856 5.70388 5.82035 5.86698 5.89864 5.97053 6.01570 6.05198 6.13617 6.19917 6.23713 6.31851 6.34900 6.49624 6.56553 6.98421 7.25860 7.28381 7.31774 7.56880 8.08691 8.64614 9.20630 9.57106 10.09597 10.78112 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033041 B = 0.003806 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.233445 B = 7354.398067 C = 7705.722366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.445 3.555 11 O -0.575 6.575 12 C 0.042 3.958 13 N -0.502 5.502 14 C 0.061 3.939 15 C -0.096 4.096 16 H 0.085 0.915 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.081 4.081 22 C 0.063 3.937 23 N -0.848 5.848 24 C 0.052 3.948 25 H 0.271 0.729 26 H 0.391 0.609 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.083 0.917 41 H 0.338 0.662 42 H 0.339 0.661 43 H 0.078 0.922 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -18.437 -4.784 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.231 3.769 11 O -0.459 6.459 12 C -0.090 4.090 13 N -0.225 5.225 14 C -0.066 4.066 15 C -0.115 4.115 16 H 0.103 0.897 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.127 4.127 21 C -0.082 4.082 22 C -0.067 4.067 23 N -0.379 5.379 24 C -0.076 4.076 25 H 0.081 0.919 26 H 0.224 0.776 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.101 0.899 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.096 0.904 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.522 -18.890 -4.316 19.383 hybrid contribution -1.185 1.859 -0.753 2.330 sum -0.663 -17.031 -5.069 17.781 Atomic orbital electron populations 1.69616 1.05931 1.28060 1.50956 1.25244 0.95623 0.99661 0.97460 0.85868 0.79273 0.80880 0.78340 1.20470 1.20941 1.19401 1.19696 0.93342 0.82244 1.47390 0.87964 1.41865 1.09091 1.04599 1.64899 1.19750 0.88444 0.84494 0.84257 1.90508 1.13654 1.86994 1.54716 1.22087 0.94070 0.91972 1.00913 1.64042 1.25322 1.01004 1.32164 1.22793 1.00186 0.94455 0.89210 1.22111 0.96921 0.95520 0.96982 0.89678 1.21440 1.02015 0.95249 0.96230 1.21542 0.98453 0.95235 1.00256 1.21601 0.98103 0.99061 0.96843 1.21164 1.01458 0.93343 0.96694 1.21396 0.94908 0.96160 0.95774 1.22099 0.88891 0.98142 0.97585 1.58801 1.03751 1.66100 1.09206 1.22638 0.97364 0.90035 0.97513 0.91948 0.77629 0.89612 0.94016 0.94041 0.89005 0.91674 0.91594 0.92237 0.92421 0.92524 0.91635 0.92185 0.91051 0.95675 0.89911 0.84737 0.84927 0.90358 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 10 C 0.45 10.72 7.58 -10.98 -0.08 10.63 16 11 O -0.58 -15.80 14.67 5.55 0.08 -15.72 16 12 C 0.04 0.76 5.11 -4.98 -0.03 0.73 16 13 N -0.50 -8.52 4.91 -233.03 -1.14 -9.66 16 14 C 0.06 0.99 4.92 -2.58 -0.01 0.98 16 15 C -0.10 -1.20 2.35 -89.89 -0.21 -1.41 16 16 H 0.08 1.11 8.01 -51.93 -0.42 0.70 16 17 C -0.11 -1.18 5.46 -27.00 -0.15 -1.32 16 18 C -0.12 -1.06 5.84 -26.55 -0.15 -1.22 16 19 C -0.12 -1.08 5.47 -26.53 -0.15 -1.22 16 20 C -0.09 -0.89 5.19 -27.08 -0.14 -1.03 16 21 C -0.08 -0.92 0.49 -154.25 -0.08 -0.99 16 22 C 0.06 0.69 4.35 -3.83 -0.02 0.67 16 23 N -0.85 -8.21 9.35 -10.37 -0.10 -8.31 16 24 C 0.05 0.69 5.98 -3.19 -0.02 0.67 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 27 H 0.09 1.43 8.01 -51.93 -0.42 1.02 16 28 H 0.04 0.71 7.64 -51.93 -0.40 0.31 16 29 H 0.04 0.69 6.50 -51.93 -0.34 0.35 16 30 H 0.09 1.76 7.44 -51.93 -0.39 1.37 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.70 5.93 -51.93 -0.31 0.39 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.62 6.08 -51.93 -0.32 0.30 16 37 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 39 H 0.03 0.32 6.33 -51.93 -0.33 -0.01 16 40 H 0.08 0.87 4.34 -51.93 -0.23 0.64 16 41 H 0.34 3.29 6.82 -39.30 -0.27 3.03 16 42 H 0.34 2.85 9.08 -39.29 -0.36 2.49 16 43 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 44 H 0.05 0.67 5.29 -51.93 -0.27 0.39 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -30.55 327.60 -8.66 -39.21 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.81 Total: 13.61 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.27 Total: -1.56 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.58 Total: -56.70 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.08 Total: -15.72 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.55 -8.66 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.097 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds