Wall clock time and date at job start Tue Mar 31 2020 05:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47121 * 299.99941 * 3 2 1 6 6 H 1.48502 * 109.47105 * 59.99883 * 3 2 1 7 7 C 1.38950 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.49067 * 111.00050 * 49.49553 * 13 12 10 15 15 C 1.53068 * 103.41638 * 146.45188 * 14 13 12 16 16 H 1.08996 * 110.54389 * 75.64749 * 15 14 13 17 17 C 1.51627 * 117.43920 * 203.66266 * 15 14 13 18 18 C 1.53803 * 107.03589 * 176.74099 * 17 15 14 19 19 C 1.52531 * 111.68447 * 302.44378 * 18 17 15 20 20 C 1.51902 * 112.18014 * 53.42393 * 19 18 17 21 21 C 1.51453 * 108.05101 * 304.10686 * 20 19 18 22 22 C 1.53002 * 109.86355 * 304.15900 * 21 20 19 23 23 N 1.46903 * 109.47103 * 290.85083 * 22 21 20 24 24 C 1.48643 * 110.99987 * 169.99951 * 13 12 10 25 25 H 0.96999 * 120.00026 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99887 * 359.97438 * 9 7 2 27 27 H 1.08993 * 109.47133 * 60.00295 * 12 10 9 28 28 H 1.08996 * 109.47320 * 300.00036 * 12 10 9 29 29 H 1.08999 * 110.63453 * 264.93606 * 14 13 12 30 30 H 1.09002 * 110.63107 * 27.96564 * 14 13 12 31 31 H 1.09000 * 109.93691 * 296.12633 * 17 15 14 32 32 H 1.08999 * 109.93888 * 57.35534 * 17 15 14 33 33 H 1.08999 * 109.04333 * 63.01196 * 18 17 15 34 34 H 1.09002 * 109.03901 * 181.87531 * 18 17 15 35 35 H 1.09000 * 109.04317 * 174.65314 * 19 18 17 36 36 H 1.09002 * 109.04672 * 293.60177 * 19 18 17 37 37 H 1.08998 * 110.37553 * 183.86617 * 20 19 18 38 38 H 1.09003 * 108.51730 * 63.27035 * 20 19 18 39 39 H 1.09000 * 109.47559 * 50.85387 * 22 21 20 40 40 H 1.09005 * 109.47125 * 170.85191 * 22 21 20 41 41 H 1.00903 * 111.00107 * 180.02562 * 23 22 21 42 42 H 1.00904 * 110.99937 * 303.94979 * 23 22 21 43 43 H 1.08995 * 110.17804 * 0.20069 * 24 13 12 44 44 H 1.08999 * 110.17494 * 121.94224 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9796 0.0016 14 6 3.2325 -5.7978 1.0597 15 6 3.5366 -7.2292 1.5087 16 1 4.1552 -7.7385 0.7699 17 6 4.1077 -7.4184 2.9005 18 6 4.2416 -8.9332 3.1306 19 6 2.9037 -9.6480 2.9702 20 6 2.2409 -9.3329 1.6402 21 6 2.1010 -7.8288 1.5304 22 6 1.3293 -7.2890 2.7362 23 7 -0.0714 -7.7245 2.6561 24 6 1.5057 -7.2724 0.2432 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3907 0.0005 27 1 0.6168 -4.9209 -0.8886 28 1 0.6174 -4.9205 0.8913 29 1 4.1249 -5.3267 0.6477 30 1 2.8353 -5.2114 1.8883 31 1 5.0868 -6.9441 2.9682 32 1 3.4332 -6.9881 3.6408 33 1 4.9510 -9.3409 2.4105 34 1 4.6195 -9.1079 4.1379 35 1 3.0636 -10.7235 3.0474 36 1 2.2328 -9.3303 3.7684 37 1 1.2589 -9.8026 1.5849 38 1 2.8783 -9.7063 0.8387 39 1 1.7765 -7.6704 3.6542 40 1 1.3717 -6.1998 2.7368 41 1 -0.6026 -7.3802 3.4418 42 1 -0.4898 -7.4381 1.7837 43 1 0.4350 -7.1085 0.3642 44 1 1.6896 -7.9577 -0.5843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:31 Heat of formation + Delta-G solvation = -30.270691 kcal Electronic energy + Delta-G solvation = -23529.361548 eV Core-core repulsion = 20288.100365 eV Total energy + Delta-G solvation = -3241.261183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00657 -38.26374 -35.82162 -34.19025 -33.79258 -31.49112 -31.15850 -30.64466 -27.21693 -26.97069 -24.90637 -24.42843 -22.30626 -21.13688 -20.49641 -19.20248 -18.19155 -17.86805 -16.40569 -16.10720 -15.66700 -15.27797 -14.68036 -14.54476 -14.32442 -14.08706 -13.85470 -13.62668 -13.45819 -13.09404 -12.64184 -12.49771 -12.31509 -11.94731 -11.89343 -11.65667 -11.54125 -11.40628 -11.14867 -11.04466 -10.91698 -10.64835 -10.36039 -10.24629 -10.14515 -10.00282 -9.71579 -9.50585 -8.70445 -8.31279 -7.98978 -7.82489 -6.43774 -3.84506 3.14711 3.25471 3.32644 3.88190 4.07934 4.24193 4.29086 4.62320 4.64125 4.75135 4.98290 5.06023 5.17510 5.22887 5.23319 5.31288 5.38353 5.48508 5.60465 5.63838 5.65635 5.72463 5.78223 5.86658 5.90859 5.95244 6.04163 6.09286 6.11833 6.21111 6.25945 6.27030 6.33169 6.40936 6.57798 6.76624 7.03195 7.31259 7.32461 7.35812 7.53569 8.04387 8.59609 9.16183 9.52011 10.03644 10.74086 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030363 B = 0.004017 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.941426 B = 6968.455102 C = 7289.034120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.579 6.579 12 C 0.041 3.959 13 N -0.507 5.507 14 C 0.070 3.930 15 C -0.101 4.101 16 H 0.081 0.919 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.088 4.088 21 C -0.080 4.080 22 C 0.063 3.937 23 N -0.848 5.848 24 C 0.052 3.948 25 H 0.271 0.729 26 H 0.391 0.609 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.027 0.973 41 H 0.338 0.662 42 H 0.337 0.663 43 H 0.054 0.946 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -16.856 5.859 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.464 6.464 12 C -0.091 4.091 13 N -0.231 5.231 14 C -0.057 4.057 15 C -0.121 4.121 16 H 0.100 0.900 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.126 4.126 21 C -0.081 4.081 22 C -0.067 4.067 23 N -0.378 5.378 24 C -0.076 4.076 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.045 0.955 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.073 0.927 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.923 -17.415 5.402 18.334 hybrid contribution -1.029 2.016 0.702 2.370 sum 0.894 -15.398 6.105 16.588 Atomic orbital electron populations 1.69617 1.05961 1.28061 1.50692 1.25259 0.95624 0.99726 0.97320 0.85807 0.79728 0.81141 0.77718 1.19200 1.20705 1.20784 1.19753 0.93388 0.82192 1.47456 0.87851 1.41868 1.09151 1.04614 1.64345 1.19756 0.88423 0.84688 0.84455 1.90496 1.13651 1.86822 1.55395 1.22098 0.94628 0.91447 1.00937 1.64214 1.11991 1.00067 1.46829 1.22796 0.97021 0.93707 0.92198 1.22196 0.95390 0.97404 0.97125 0.90038 1.21404 1.01171 0.95832 0.96387 1.21533 0.97448 0.95276 1.01136 1.21244 0.96480 0.99452 0.98423 1.20794 1.00579 0.94015 0.97196 1.21372 0.95680 0.96280 0.94814 1.22095 0.88846 0.96979 0.98816 1.58837 1.03346 1.68025 1.07642 1.22631 0.96698 0.92029 0.96225 0.91922 0.77549 0.89416 0.94135 0.88124 0.94015 0.91672 0.91622 0.92297 0.92434 0.92484 0.91855 0.91030 0.92493 0.90036 0.95528 0.84961 0.84836 0.92747 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.37 16 10 C 0.44 10.45 7.33 -10.98 -0.08 10.36 16 11 O -0.58 -15.41 13.17 5.55 0.07 -15.34 16 12 C 0.04 0.74 5.33 -4.97 -0.03 0.72 16 13 N -0.51 -8.65 5.26 -233.04 -1.23 -9.88 16 14 C 0.07 1.20 4.12 -2.58 -0.01 1.19 16 15 C -0.10 -1.35 2.30 -89.90 -0.21 -1.56 16 16 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 17 C -0.11 -1.26 5.50 -27.01 -0.15 -1.41 16 18 C -0.12 -1.13 5.84 -26.55 -0.16 -1.28 16 19 C -0.12 -1.14 5.42 -27.53 -0.15 -1.29 16 20 C -0.09 -0.92 5.07 -28.07 -0.14 -1.07 16 21 C -0.08 -0.95 0.50 -154.24 -0.08 -1.03 16 22 C 0.06 0.74 4.38 -3.82 -0.02 0.72 16 23 N -0.85 -8.78 9.35 -10.36 -0.10 -8.87 16 24 C 0.05 0.70 5.98 -3.20 -0.02 0.68 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 29 H 0.10 2.05 6.75 -51.93 -0.35 1.70 16 30 H 0.04 0.78 6.41 -51.93 -0.33 0.45 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.77 5.89 -51.93 -0.31 0.46 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.64 6.18 -51.93 -0.32 0.32 16 37 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 38 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.08 0.93 4.43 -51.93 -0.23 0.70 16 40 H 0.03 0.37 6.38 -51.93 -0.33 0.04 16 41 H 0.34 3.10 9.08 -39.29 -0.36 2.74 16 42 H 0.34 3.47 6.82 -39.29 -0.27 3.20 16 43 H 0.05 0.67 5.29 -51.93 -0.27 0.40 16 44 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -29.64 325.38 -8.78 -38.42 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -6.80 Total: 14.86 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.27 Total: -1.92 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.66 Total: -56.95 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.07 Total: -15.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.64 -8.78 -38.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.148 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds