Wall clock time and date at job start Tue Mar 31 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 N 1.46494 * 109.47171 * 240.00392 * 2 1 3 15 15 C 1.34779 * 120.00531 * 84.99693 * 14 2 1 16 16 O 1.21277 * 119.99526 * 0.02562 * 15 14 2 17 17 C 1.50699 * 120.00383 * 179.97438 * 15 14 2 18 18 C 1.54138 * 110.74484 * 327.45772 * 17 15 14 19 19 C 1.57074 * 102.00631 * 97.57650 * 18 17 15 20 20 C 1.54839 * 101.72899 * 36.30857 * 19 18 17 21 21 N 1.47858 * 110.77337 * 87.12547 * 17 15 14 22 22 C 1.47954 * 108.37317 * 120.33458 * 21 17 15 23 23 C 1.54845 * 105.06270 * 337.18297 * 22 21 17 24 24 C 1.54135 * 110.74783 * 206.01556 * 17 15 14 25 25 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 27 27 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 28 28 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 29 29 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 31 31 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 32 32 H 0.97009 * 119.99912 * 264.99313 * 14 2 1 33 33 H 1.08995 * 110.73065 * 215.76693 * 18 17 15 34 34 H 1.09004 * 110.73394 * 339.07127 * 18 17 15 35 35 H 1.08999 * 111.10412 * 278.12827 * 19 18 17 36 36 H 1.08999 * 110.80736 * 154.36351 * 19 18 17 37 37 H 1.08995 * 110.32075 * 204.26187 * 20 19 18 38 38 H 1.09002 * 110.32144 * 82.05477 * 20 19 18 39 39 H 1.09001 * 110.32295 * 218.28714 * 22 21 17 40 40 H 1.08999 * 110.41322 * 96.12049 * 22 21 17 41 41 H 1.09000 * 110.98611 * 278.57653 * 23 22 21 42 42 H 1.08998 * 110.98375 * 154.76726 * 23 22 21 43 43 H 1.08999 * 110.72796 * 20.92207 * 24 17 15 44 44 H 1.09000 * 110.73246 * 144.22167 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1844 -1.4332 2.2097 7 1 3.6473 -1.8384 3.0545 8 6 5.5683 -1.5277 2.1568 9 7 6.2259 -2.1115 3.1360 10 14 6.4972 -0.8262 0.6958 11 1 6.8526 0.5896 0.9685 12 1 7.7364 -1.6135 0.4729 13 1 5.6411 -0.8972 -0.5156 14 7 2.0184 -0.6905 -1.1962 15 6 2.1471 -0.0182 -2.3572 16 8 1.8590 1.1586 -2.4115 17 6 2.6500 -0.7284 -3.5875 18 6 3.6605 -1.8287 -3.2080 19 6 2.7586 -3.1147 -3.2081 20 6 1.7948 -2.8232 -4.3845 21 7 1.5341 -1.3683 -4.3165 22 6 1.4814 -0.7993 -5.6813 23 6 2.1870 0.5747 -5.5719 24 6 3.3191 0.2659 -4.5568 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6055 -1.7198 1.2952 29 1 1.7517 -0.1583 2.1369 30 1 3.9825 -0.4620 0.4319 31 1 7.1930 -2.1778 3.0990 32 1 2.2492 -1.6317 -1.1526 33 1 4.4484 -1.9040 -3.9573 34 1 4.0822 -1.6414 -2.2205 35 1 2.2118 -3.2107 -2.2701 36 1 3.3549 -4.0059 -3.4036 37 1 0.8664 -3.3804 -4.2602 38 1 2.2670 -3.0793 -5.3330 39 1 0.4464 -0.6693 -5.9975 40 1 2.0128 -1.4430 -6.3823 41 1 1.5079 1.3323 -5.1809 42 1 2.5980 0.8801 -6.5341 43 1 3.6238 1.1710 -4.0314 44 1 4.1703 -0.1962 -5.0568 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699410883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:06 Heat of formation + Delta-G solvation = -17.525671 kcal Electronic energy + Delta-G solvation = -23834.450849 eV Core-core repulsion = 20593.742331 eV Total energy + Delta-G solvation = -3240.708518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97833 -38.49665 -36.24475 -34.28807 -33.47996 -31.89446 -31.12035 -30.06455 -28.28737 -25.95394 -25.57722 -23.09041 -22.06342 -21.73752 -20.88544 -20.47093 -19.24160 -17.85565 -17.14677 -16.37246 -15.70580 -15.18696 -14.79674 -14.44315 -14.41078 -14.11614 -13.86563 -13.55752 -13.15342 -12.79670 -12.72916 -12.55178 -12.36409 -12.25286 -12.12769 -11.79840 -11.73744 -11.54932 -11.23441 -11.16159 -11.02246 -10.98240 -10.90066 -10.53825 -10.45115 -10.14407 -9.66462 -9.63853 -8.96655 -8.72806 -8.58203 -7.28860 -5.81104 -3.16966 2.75012 3.30584 3.36853 3.38968 3.42319 4.01579 4.23520 4.34135 4.54519 4.63312 4.79505 4.87414 4.93911 4.99742 5.16007 5.17879 5.32949 5.36753 5.40310 5.48303 5.53774 5.61384 5.65500 5.68974 5.73071 5.81623 5.85187 5.89855 5.95549 5.98677 6.03134 6.10073 6.15726 6.37666 6.42732 6.62236 6.63479 6.75910 6.90793 7.84197 7.94766 8.37526 8.52364 9.16454 9.88700 10.08690 11.37146 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.006012 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.359846 B = 4656.444741 C = 5217.692730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.086 0.914 4 C 0.148 3.852 5 N -0.755 5.755 6 C -0.245 4.245 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.882 3.118 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 N -0.710 5.710 15 C 0.545 3.455 16 O -0.545 6.545 17 C 0.071 3.929 18 C -0.146 4.146 19 C -0.134 4.134 20 C 0.036 3.964 21 N -0.498 5.498 22 C 0.037 3.963 23 C -0.128 4.128 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.362 0.638 31 H 0.260 0.740 32 H 0.402 0.598 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 -0.094 -18.329 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.104 0.896 4 C 0.021 3.979 5 N -0.401 5.401 6 C -0.375 4.375 7 H 0.109 0.891 8 C -0.189 4.189 9 N -0.580 5.580 10 Si 0.713 3.287 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 N -0.362 5.362 15 C 0.330 3.670 16 O -0.421 6.421 17 C -0.022 4.022 18 C -0.184 4.184 19 C -0.172 4.172 20 C -0.092 4.092 21 N -0.223 5.223 22 C -0.091 4.091 23 C -0.166 4.166 24 C -0.161 4.161 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.195 0.805 31 H 0.070 0.930 32 H 0.239 0.761 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.234 0.722 -17.853 20.591 hybrid contribution 1.701 -0.208 -1.300 2.151 sum -8.533 0.515 -19.153 20.974 Atomic orbital electron populations 1.22062 0.95137 1.02017 1.02155 1.21310 0.93906 0.97868 0.84567 0.89604 1.20975 0.85410 0.97628 0.93914 1.42702 1.01342 1.71628 1.24417 1.19059 0.89820 1.29635 0.98954 0.89104 1.24650 0.96145 1.00591 0.97541 1.69695 1.07286 1.48646 1.32396 0.86599 0.79751 0.79057 0.83308 1.21095 1.21713 1.20401 1.46133 1.66349 1.14378 1.09330 1.19928 0.76728 0.86633 0.83742 1.90631 1.50301 1.16104 1.85069 1.22365 0.90697 0.95324 0.93771 1.23459 0.97285 0.93746 1.03925 1.23158 0.97112 0.97826 0.99077 1.23295 0.99432 0.88503 0.97951 1.65036 1.40093 1.03416 1.13792 1.23264 1.01201 0.95409 0.89182 1.22741 0.97487 0.97431 0.98904 1.22757 0.97596 0.99560 0.96196 0.92493 0.91668 0.92305 0.94982 0.93950 0.80521 0.93034 0.76145 0.90122 0.89201 0.90258 0.90020 0.89740 0.92921 0.90014 0.93079 0.89954 0.90837 0.89592 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.48 37.16 0.35 -1.81 16 2 C 0.13 2.13 2.73 -67.93 -0.19 1.94 16 3 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 4 C 0.15 2.80 5.82 -4.04 -0.02 2.77 16 5 N -0.75 -17.54 5.24 -59.91 -0.31 -17.86 16 6 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 7 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 8 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 9 N -0.93 -28.95 13.97 55.49 0.78 -28.17 16 10 Si 0.88 21.95 27.74 -169.99 -4.71 17.23 16 11 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 14 N -0.71 -11.49 4.15 -53.81 -0.22 -11.71 16 15 C 0.55 9.09 6.86 -10.99 -0.08 9.02 16 16 O -0.54 -10.52 15.64 5.56 0.09 -10.44 16 17 C 0.07 0.96 0.93 -131.04 -0.12 0.84 16 18 C -0.15 -1.85 5.61 -23.93 -0.13 -1.99 16 19 C -0.13 -1.44 6.86 -23.55 -0.16 -1.60 16 20 C 0.04 0.36 6.75 -2.27 -0.02 0.34 16 21 N -0.50 -6.04 5.37 -214.06 -1.15 -7.19 16 22 C 0.04 0.38 6.74 -2.27 -0.02 0.36 16 23 C -0.13 -1.38 7.07 -24.62 -0.17 -1.55 16 24 C -0.12 -1.52 5.72 -25.00 -0.14 -1.67 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.36 8.41 5.20 -40.82 -0.21 8.20 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.40 6.25 5.70 -40.82 -0.23 6.02 16 33 H 0.08 0.91 7.32 -51.93 -0.38 0.53 16 34 H 0.09 1.37 7.20 -51.93 -0.37 0.99 16 35 H 0.08 0.90 6.73 -51.93 -0.35 0.55 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.46 7.13 -51.93 -0.37 0.09 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.45 7.14 -51.93 -0.37 0.07 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.22 7.36 -51.93 -0.38 0.83 16 44 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -32.19 339.84 -8.63 -40.82 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -7.26 Total: 12.40 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.95 Total: -0.20 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.91 Total: -64.93 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.19 -8.63 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699410883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.293 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds