Wall clock time and date at job start Tue Mar 31 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46841 * 111.00185 * 2 1 4 4 C 1.53043 * 109.52667 * 185.83839 * 3 2 1 5 5 C 1.53124 * 109.27673 * 300.82240 * 4 3 2 6 6 C 1.50698 * 109.52131 * 177.55766 * 5 4 3 7 7 O 1.21285 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00008 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46948 * 174.94227 * 9 8 6 11 11 N 1.46505 * 115.55024 * 80.38544 * 10 9 8 12 12 C 1.36942 * 119.99583 * 65.27855 * 11 10 9 13 13 H 1.08007 * 119.99964 * 354.96284 * 12 11 10 14 14 C 1.38809 * 119.99798 * 174.68484 * 12 11 10 15 15 N 1.31619 * 120.00146 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99839 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47378 * 89.99754 * 16 14 12 18 18 H 1.48498 * 109.47141 * 210.00161 * 16 14 12 19 19 H 1.48500 * 109.47218 * 329.99749 * 16 14 12 20 20 C 1.52999 * 117.50098 * 226.06177 * 10 9 8 21 21 C 1.53002 * 117.49982 * 294.71995 * 10 9 8 22 22 C 1.53125 * 109.15823 * 57.65366 * 5 4 3 23 23 C 1.46850 * 111.00204 * 124.21450 * 2 1 3 24 24 H 1.09008 * 109.46930 * 59.99869 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47082 * 299.99516 * 1 2 3 27 27 H 1.09006 * 109.45965 * 65.82786 * 3 2 1 28 28 H 1.09001 * 109.45991 * 305.85531 * 3 2 1 29 29 H 1.09000 * 109.50495 * 180.88472 * 4 3 2 30 30 H 1.08999 * 109.49876 * 60.76273 * 4 3 2 31 31 H 1.08997 * 109.52089 * 297.68333 * 5 4 3 32 32 H 0.97001 * 119.99786 * 359.97438 * 8 6 5 33 33 H 1.08994 * 109.47255 * 54.94194 * 9 8 6 34 34 H 1.08999 * 109.46673 * 294.93754 * 9 8 6 35 35 H 0.96998 * 120.00497 * 245.27841 * 11 10 9 36 36 H 0.97000 * 119.99696 * 180.02562 * 15 14 12 37 37 H 1.08998 * 117.49974 * 215.00780 * 20 10 9 38 38 H 1.09000 * 117.49520 * 0.02562 * 20 10 9 39 39 H 1.09000 * 117.49687 * 359.97438 * 21 10 9 40 40 H 1.08995 * 117.49858 * 144.97063 * 21 10 9 41 41 H 1.08999 * 109.50228 * 62.28593 * 22 5 4 42 42 H 1.08994 * 109.49875 * 182.40081 * 22 5 4 43 43 H 1.09003 * 109.45631 * 294.17704 * 23 2 1 44 44 H 1.09000 * 109.46175 * 54.14202 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5369 1.0144 6 6 5.6133 0.4462 0.8432 7 8 6.1469 0.9680 -0.1129 8 7 6.3569 -0.2146 1.7524 9 6 7.8098 -0.3022 1.5862 10 6 8.4224 -0.9892 2.8084 11 7 8.3380 -2.4518 2.8196 12 6 9.0129 -3.1838 1.8793 13 1 9.5407 -2.6825 1.0814 14 6 9.0234 -4.5698 1.9550 15 7 8.3843 -5.1805 2.9302 16 14 9.9446 -5.5682 0.6728 17 1 11.3438 -5.7808 1.1224 18 1 9.2765 -6.8825 0.4951 19 1 9.9457 -4.8350 -0.6185 20 6 9.6649 -0.3485 3.4302 21 6 8.3177 -0.2653 4.1522 22 6 3.5181 -0.8716 1.0208 23 6 1.9953 -0.7709 1.1337 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.7325 1.8607 0.9377 28 1 1.5634 1.9256 -0.8330 29 1 3.9099 2.3512 -0.1309 30 1 3.7813 0.8567 -1.0906 31 1 3.8896 1.0360 1.9559 32 1 5.9302 -0.6316 2.5172 33 1 8.2253 0.7005 1.4868 34 1 8.0388 -0.8809 0.6913 35 1 7.8041 -2.9017 3.4930 36 1 8.3920 -6.1490 2.9833 37 1 10.4195 -1.0151 3.8475 38 1 10.0456 0.5627 2.9689 39 1 7.8128 0.7006 4.1655 40 1 8.1856 -0.8772 5.0445 41 1 3.7813 -1.3837 0.0953 42 1 3.9098 -1.4304 1.8706 43 1 1.7324 -0.2709 2.0660 44 1 1.5634 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699663744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:07 Heat of formation + Delta-G solvation = -4.902720 kcal Electronic energy + Delta-G solvation = -22565.621318 eV Core-core repulsion = 19325.460173 eV Total energy + Delta-G solvation = -3240.161145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.05746 -38.41380 -37.37957 -33.84691 -33.49666 -32.99206 -30.93740 -29.71106 -27.83573 -26.02945 -23.91521 -23.36442 -23.12623 -21.88028 -20.44768 -19.62321 -19.02128 -17.19482 -16.90828 -15.97295 -15.61613 -15.35244 -15.16554 -14.83892 -14.51205 -14.13359 -14.00444 -13.55878 -13.37193 -13.09516 -13.01116 -12.61330 -12.52004 -12.02836 -11.92195 -11.77129 -11.33496 -11.23497 -11.01430 -10.96626 -10.87368 -10.72273 -10.53730 -10.29968 -10.25552 -9.71566 -9.55183 -9.28358 -8.85255 -8.57461 -8.51495 -7.07673 -5.84448 -3.14949 2.95371 3.41282 3.47321 3.48836 3.50282 3.74531 4.41699 4.57543 4.60933 4.70138 4.84689 4.97452 5.14220 5.16548 5.22679 5.24938 5.29779 5.33188 5.43141 5.46063 5.48612 5.63297 5.63971 5.64765 5.68882 5.81500 5.84064 5.97301 6.08693 6.16399 6.26071 6.32332 6.42787 6.56906 6.66669 6.77531 6.86836 6.89276 6.89893 7.69012 7.91551 8.33773 8.58108 9.45188 9.98182 10.33571 11.37471 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.004215 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.661401 B = 6641.641238 C = 7467.930518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.096 4.096 5 C -0.107 4.107 6 C 0.514 3.486 7 O -0.550 6.550 8 N -0.710 5.710 9 C 0.147 3.853 10 C 0.128 3.872 11 N -0.689 5.689 12 C -0.238 4.238 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.932 5.932 16 Si 0.907 3.093 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.280 1.280 20 C -0.187 4.187 21 C -0.186 4.186 22 C -0.109 4.109 23 C 0.058 3.942 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.400 0.600 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.591 12.593 -0.214 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.134 4.134 5 C -0.128 4.128 6 C 0.300 3.700 7 O -0.428 6.428 8 N -0.360 5.360 9 C 0.021 3.979 10 C 0.034 3.966 11 N -0.328 5.328 12 C -0.369 4.369 13 H 0.090 0.910 14 C -0.205 4.205 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.228 4.228 21 C -0.223 4.223 22 C -0.147 4.147 23 C -0.070 4.070 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.936 12.608 -1.466 18.123 hybrid contribution -0.063 -0.670 0.794 1.041 sum -12.999 11.938 -0.672 17.662 Atomic orbital electron populations 1.22345 0.87350 1.02099 1.00470 1.61909 1.07452 1.13934 1.43687 1.22134 0.95669 0.88959 1.00381 1.21394 0.92934 1.00397 0.98644 1.21369 0.92054 0.98444 1.00946 1.20499 0.88925 0.78212 0.82396 1.90668 1.73975 1.47401 1.30800 1.45935 1.08347 1.54826 1.26897 1.21237 0.78692 0.98931 0.99007 1.20174 0.99523 0.85898 0.90969 1.41778 1.57633 0.96946 1.36492 1.19171 1.25002 0.88412 1.04293 0.90984 1.24743 1.00769 0.96494 0.98469 1.69657 1.46800 1.08446 1.33051 0.86188 0.79312 0.79698 0.81022 1.21634 1.21746 1.20580 1.23368 0.92142 1.02290 1.05001 1.23070 1.01750 1.01218 0.96311 1.21596 0.94193 0.94995 1.03953 1.22092 0.95269 0.98428 0.91168 0.91418 0.91333 0.95834 0.94987 0.90541 0.90884 0.90125 0.89235 0.76611 0.92244 0.90713 0.77772 0.93429 0.88609 0.89965 0.89555 0.89031 0.90190 0.90442 0.94766 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.06 0.58 0.79 16 2 N -0.55 -5.69 4.91 -242.96 -1.19 -6.88 16 3 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 4 C -0.10 -1.13 4.68 -26.65 -0.12 -1.25 16 5 C -0.11 -1.30 2.59 -91.64 -0.24 -1.53 16 6 C 0.51 8.21 7.16 -10.99 -0.08 8.13 16 7 O -0.55 -10.78 15.97 5.55 0.09 -10.69 16 8 N -0.71 -11.28 5.42 -60.30 -0.33 -11.61 16 9 C 0.15 2.69 5.73 -4.04 -0.02 2.67 16 10 C 0.13 2.43 2.15 -131.81 -0.28 2.15 16 11 N -0.69 -16.30 5.49 -47.22 -0.26 -16.56 16 12 C -0.24 -6.39 9.56 -15.06 -0.14 -6.53 16 13 H 0.07 1.93 7.77 -52.48 -0.41 1.52 16 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 15 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 16 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 C -0.19 -3.25 10.11 -26.70 -0.27 -3.52 16 21 C -0.19 -2.93 10.14 -26.69 -0.27 -3.20 16 22 C -0.11 -1.29 5.26 -26.65 -0.14 -1.43 16 23 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 24 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.40 5.74 7.97 -40.82 -0.33 5.41 16 33 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 34 H 0.07 1.60 7.73 -51.93 -0.40 1.20 16 35 H 0.39 9.71 8.04 -40.82 -0.33 9.38 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -30.74 356.38 -9.49 -40.23 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.73 Total: 12.41 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.13 Total: -2.97 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -1.05 Total: -61.53 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.74 -9.49 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699663744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.322 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds