Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47486 * 271.95046 * 3 2 1 5 5 H 1.48498 * 109.47306 * 31.95387 * 3 2 1 6 6 H 1.48508 * 109.46864 * 151.95169 * 3 2 1 7 7 C 1.38807 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00025 * 339.46986 * 7 2 1 9 9 N 1.36932 * 119.99998 * 159.47661 * 7 2 1 10 10 C 1.47085 * 120.88213 * 153.50990 * 9 7 2 11 11 C 1.53245 * 108.52064 * 128.79288 * 10 9 7 12 12 N 1.46900 * 109.33848 * 53.82868 * 11 10 9 13 13 C 1.46899 * 111.00163 * 172.74528 * 12 11 10 14 14 C 1.52996 * 109.47462 * 169.99896 * 13 12 11 15 15 C 1.53004 * 109.47107 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.46933 * 180.02562 * 15 14 13 17 17 C 1.34775 * 119.99956 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99860 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00061 * 179.97438 * 17 16 15 20 20 C 1.52996 * 117.50314 * 248.62002 * 19 17 16 21 21 C 1.53005 * 60.00263 * 252.51151 * 20 19 17 22 22 C 1.46896 * 111.27472 * 296.89735 * 12 11 10 23 23 C 1.47080 * 120.88121 * 333.49007 * 9 7 2 24 24 H 0.97009 * 119.99909 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.62915 * 9.08331 * 10 9 7 26 26 H 1.08997 * 109.78737 * 248.59717 * 10 9 7 27 27 H 1.09000 * 109.49348 * 173.78957 * 11 10 9 28 28 H 1.08995 * 109.49345 * 293.87143 * 11 10 9 29 29 H 1.08999 * 109.47163 * 290.00538 * 13 12 11 30 30 H 1.09008 * 109.46835 * 50.00007 * 13 12 11 31 31 H 1.08999 * 109.47456 * 300.00462 * 14 13 12 32 32 H 1.09000 * 109.46676 * 60.00297 * 14 13 12 33 33 H 1.08998 * 109.47357 * 300.00003 * 15 14 13 34 34 H 1.09000 * 109.47078 * 60.00582 * 15 14 13 35 35 H 0.97001 * 120.00009 * 0.02562 * 16 15 14 36 36 H 1.08997 * 115.55007 * 34.33413 * 19 17 16 37 37 H 1.09004 * 117.49260 * 0.02562 * 20 19 17 38 38 H 1.09002 * 117.50302 * 145.02166 * 20 19 17 39 39 H 1.08991 * 117.49606 * 252.50687 * 21 20 19 40 40 H 1.09003 * 117.51539 * 107.47710 * 21 20 19 41 41 H 1.09001 * 109.49168 * 303.15004 * 22 12 11 42 42 H 1.08999 * 109.50008 * 183.06514 * 22 12 11 43 43 H 1.08995 * 109.62655 * 350.91327 * 23 9 7 44 44 H 1.08993 * 109.63223 * 111.49952 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4564 2.0703 -1.3992 5 1 1.4689 2.6404 0.7410 6 1 3.5678 1.4286 0.6584 7 6 2.0102 -1.2021 -0.0005 8 1 1.5217 -2.1079 0.3271 9 7 3.3144 -1.2396 -0.4163 10 6 4.2354 -2.2737 0.0794 11 6 4.9156 -2.9366 -1.1232 12 7 5.5361 -1.9026 -1.9621 13 6 6.3435 -2.5061 -3.0307 14 6 6.7665 -1.4224 -4.0243 15 6 7.6080 -2.0509 -5.1369 16 7 8.0136 -1.0131 -6.0880 17 6 8.7663 -1.3366 -7.1581 18 8 9.1084 -2.4870 -7.3334 19 6 9.1830 -0.2692 -8.1368 20 6 8.5702 -0.3172 -9.5379 21 6 10.0371 -0.7000 -9.3310 22 6 4.5275 -0.9897 -2.5162 23 6 3.8312 -0.2470 -1.3707 24 1 -0.4850 0.8401 0.0004 25 1 3.6772 -3.0216 0.6425 26 1 4.9894 -1.8191 0.7219 27 1 5.6815 -3.6282 -0.7722 28 1 4.1731 -3.4811 -1.7066 29 1 7.2306 -2.9690 -2.5984 30 1 5.7541 -3.2633 -3.5479 31 1 5.8794 -0.9595 -4.4566 32 1 7.3559 -0.6653 -3.5071 33 1 8.4952 -2.5134 -4.7043 34 1 7.0190 -2.8082 -5.6543 35 1 7.7403 -0.0930 -5.9476 36 1 9.3789 0.7128 -7.7062 37 1 7.8654 -1.1207 -9.7516 38 1 8.3627 0.6334 -10.0293 39 1 10.7944 -0.0014 -9.6862 40 1 10.2978 -1.7556 -9.4085 41 1 3.7903 -1.5613 -3.0802 42 1 5.0117 -0.2694 -3.1755 43 1 3.0059 0.3449 -1.7663 44 1 4.5462 0.4053 -0.8695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752333052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = 22.222769 kcal Electronic energy + Delta-G solvation = -21928.838671 eV Core-core repulsion = 18689.853775 eV Total energy + Delta-G solvation = -3238.984896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20195 -38.64927 -36.78190 -35.76246 -34.51984 -32.12970 -30.88521 -30.38519 -27.39268 -25.42960 -23.53960 -23.42516 -22.81775 -22.44767 -21.12101 -20.09529 -19.41325 -17.72891 -16.92720 -16.43262 -15.98608 -15.53791 -15.38480 -14.68123 -14.64117 -14.37120 -14.14462 -14.00068 -13.91241 -13.29496 -12.88391 -12.57848 -12.35161 -12.13833 -11.96391 -11.86971 -11.68897 -11.52313 -11.07160 -11.01687 -10.90263 -10.80189 -10.57709 -10.31139 -10.13763 -10.00927 -9.81945 -9.46233 -9.33469 -8.66246 -8.00686 -6.96746 -5.95153 -3.30348 2.21294 2.82856 3.30504 3.48188 3.48351 3.52749 4.13637 4.31637 4.41403 4.48978 4.52833 4.72796 4.80618 4.89308 4.96474 5.03327 5.20130 5.31629 5.35240 5.42564 5.48379 5.54197 5.60437 5.68659 5.71681 5.73178 5.89179 5.93622 6.02271 6.04950 6.09246 6.17401 6.21982 6.38235 6.56688 6.64008 6.87356 7.21440 7.40097 7.44446 7.93969 7.95312 8.32067 8.92768 9.71411 10.10936 11.20913 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.003023 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.793506 B = 9260.121091 C = 9961.231180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.885 3.115 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.152 3.848 11 C 0.042 3.958 12 N -0.534 5.534 13 C 0.059 3.941 14 C -0.136 4.136 15 C 0.121 3.879 16 N -0.725 5.725 17 C 0.541 3.459 18 O -0.543 6.543 19 C -0.197 4.197 20 C -0.153 4.153 21 C -0.148 4.148 22 C 0.036 3.964 23 C 0.129 3.871 24 H 0.262 0.738 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.403 0.597 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.227 -0.006 -15.026 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.025 3.975 11 C -0.087 4.087 12 N -0.259 5.259 13 C -0.069 4.069 14 C -0.174 4.174 15 C -0.003 4.003 16 N -0.376 5.376 17 C 0.327 3.673 18 O -0.420 6.420 19 C -0.218 4.218 20 C -0.190 4.190 21 C -0.186 4.186 22 C -0.093 4.093 23 C 0.004 3.996 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 18.593 -0.500 -14.791 23.764 hybrid contribution -0.317 1.037 -0.347 1.138 sum 18.276 0.536 -15.138 23.737 Atomic orbital electron populations 1.69842 1.05712 1.26531 1.53247 1.25270 0.95262 0.97628 0.99659 0.86933 0.79995 0.84517 0.77017 1.21677 1.23205 1.19462 1.18935 0.84774 0.94809 1.40122 0.89690 1.44419 1.08493 1.32167 1.48243 1.21000 0.92062 0.91602 0.92792 1.22632 0.96787 0.93009 0.96249 1.62016 1.24523 1.19029 1.20375 1.21978 0.97866 0.95255 0.91837 1.21968 1.00209 0.99562 0.95681 1.21349 0.98951 0.90438 0.89578 1.45945 1.53719 1.12440 1.25501 1.19679 0.77580 0.88831 0.81184 1.90703 1.55432 1.20886 1.75022 1.22208 1.08927 1.00108 0.90526 1.22950 0.97113 1.03892 0.95060 1.22955 0.93832 1.03547 0.98231 1.22770 0.92843 0.95865 0.97830 1.21440 0.96461 0.92007 0.89737 0.92792 0.91660 0.95189 0.91512 0.94853 0.90778 0.94974 0.90630 0.90272 0.91295 0.91490 0.76294 0.85786 0.88214 0.87684 0.87886 0.87402 0.94722 0.91158 0.90815 0.95009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.96 13.97 55.49 0.78 -27.19 16 2 C 0.02 0.59 5.24 -17.43 -0.09 0.50 16 3 Si 0.88 22.40 24.30 -169.99 -4.13 18.27 16 4 H -0.29 -6.97 6.58 56.52 0.37 -6.59 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.77 6.61 56.52 0.37 -6.40 16 7 C -0.26 -7.26 10.08 -15.06 -0.15 -7.41 16 8 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 9 N -0.61 -14.66 2.82 -172.01 -0.48 -15.15 16 10 C 0.15 3.03 6.69 -3.60 -0.02 3.00 16 11 C 0.04 0.71 5.58 -3.70 -0.02 0.69 16 12 N -0.53 -8.57 4.78 -234.32 -1.12 -9.69 16 13 C 0.06 0.74 5.27 -3.83 -0.02 0.72 16 14 C -0.14 -1.40 4.58 -26.73 -0.12 -1.52 16 15 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 16 N -0.72 -6.59 5.56 -60.29 -0.33 -6.92 16 17 C 0.54 5.82 7.61 -10.99 -0.08 5.74 16 18 O -0.54 -7.99 16.26 5.55 0.09 -7.90 16 19 C -0.20 -1.48 6.19 -91.77 -0.57 -2.05 16 20 C -0.15 -1.00 10.23 -26.73 -0.27 -1.27 16 21 C -0.15 -1.05 10.04 -26.73 -0.27 -1.32 16 22 C 0.04 0.64 5.04 -3.70 -0.02 0.62 16 23 C 0.13 2.84 4.35 -3.60 -0.02 2.82 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.41 8.08 -51.92 -0.42 -0.01 16 31 H 0.08 0.80 6.18 -51.93 -0.32 0.48 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 2.68 8.47 -40.82 -0.35 2.33 16 36 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 0.94 7.67 -51.93 -0.40 0.54 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.05 5.73 -51.93 -0.30 0.75 16 43 H 0.07 1.75 4.60 -51.93 -0.24 1.51 16 44 H 0.03 0.71 6.94 -51.93 -0.36 0.35 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -33.47 344.23 -9.18 -42.65 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.48 Total: -0.96 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.68 Total: 1.70 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -1.16 Total: -58.94 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.13 Total: 18.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.47 -9.18 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752333052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.869 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds