Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47486 * 271.95046 * 3 2 1 5 5 H 1.48498 * 109.47306 * 31.95387 * 3 2 1 6 6 H 1.48508 * 109.46864 * 151.95169 * 3 2 1 7 7 C 1.38807 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00025 * 339.46986 * 7 2 1 9 9 N 1.36932 * 119.99998 * 159.47661 * 7 2 1 10 10 C 1.47085 * 120.88213 * 153.50990 * 9 7 2 11 11 C 1.53245 * 108.52064 * 128.79288 * 10 9 7 12 12 N 1.46900 * 109.33848 * 53.82868 * 11 10 9 13 13 C 1.46899 * 111.00163 * 172.74528 * 12 11 10 14 14 C 1.52996 * 109.47462 * 169.99896 * 13 12 11 15 15 C 1.53004 * 109.47107 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.46933 * 180.02562 * 15 14 13 17 17 C 1.34775 * 119.99956 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99860 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00061 * 179.97438 * 17 16 15 20 20 C 1.52996 * 117.50314 * 248.62002 * 19 17 16 21 21 C 1.53005 * 60.00263 * 252.51151 * 20 19 17 22 22 C 1.46896 * 111.27472 * 296.89735 * 12 11 10 23 23 C 1.47080 * 120.88121 * 333.49007 * 9 7 2 24 24 H 0.97009 * 119.99909 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.62915 * 9.08331 * 10 9 7 26 26 H 1.08997 * 109.78737 * 248.59717 * 10 9 7 27 27 H 1.09000 * 109.49348 * 173.78957 * 11 10 9 28 28 H 1.08995 * 109.49345 * 293.87143 * 11 10 9 29 29 H 1.08999 * 109.47163 * 290.00538 * 13 12 11 30 30 H 1.09008 * 109.46835 * 50.00007 * 13 12 11 31 31 H 1.08999 * 109.47456 * 300.00462 * 14 13 12 32 32 H 1.09000 * 109.46676 * 60.00297 * 14 13 12 33 33 H 1.08998 * 109.47357 * 300.00003 * 15 14 13 34 34 H 1.09000 * 109.47078 * 60.00582 * 15 14 13 35 35 H 0.97001 * 120.00009 * 0.02562 * 16 15 14 36 36 H 1.08997 * 115.55007 * 34.33413 * 19 17 16 37 37 H 1.09004 * 117.49260 * 0.02562 * 20 19 17 38 38 H 1.09002 * 117.50302 * 145.02166 * 20 19 17 39 39 H 1.08991 * 117.49606 * 252.50687 * 21 20 19 40 40 H 1.09003 * 117.51539 * 107.47710 * 21 20 19 41 41 H 1.09001 * 109.49168 * 303.15004 * 22 12 11 42 42 H 1.08999 * 109.50008 * 183.06514 * 22 12 11 43 43 H 1.08995 * 109.62655 * 350.91327 * 23 9 7 44 44 H 1.08993 * 109.63223 * 111.49952 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4564 2.0703 -1.3992 5 1 1.4689 2.6404 0.7410 6 1 3.5678 1.4286 0.6584 7 6 2.0102 -1.2021 -0.0005 8 1 1.5217 -2.1079 0.3271 9 7 3.3144 -1.2396 -0.4163 10 6 4.2354 -2.2737 0.0794 11 6 4.9156 -2.9366 -1.1232 12 7 5.5361 -1.9026 -1.9621 13 6 6.3435 -2.5061 -3.0307 14 6 6.7665 -1.4224 -4.0243 15 6 7.6080 -2.0509 -5.1369 16 7 8.0136 -1.0131 -6.0880 17 6 8.7663 -1.3366 -7.1581 18 8 9.1084 -2.4870 -7.3334 19 6 9.1830 -0.2692 -8.1368 20 6 8.5702 -0.3172 -9.5379 21 6 10.0371 -0.7000 -9.3310 22 6 4.5275 -0.9897 -2.5162 23 6 3.8312 -0.2470 -1.3707 24 1 -0.4850 0.8401 0.0004 25 1 3.6772 -3.0216 0.6425 26 1 4.9894 -1.8191 0.7219 27 1 5.6815 -3.6282 -0.7722 28 1 4.1731 -3.4811 -1.7066 29 1 7.2306 -2.9690 -2.5984 30 1 5.7541 -3.2633 -3.5479 31 1 5.8794 -0.9595 -4.4566 32 1 7.3559 -0.6653 -3.5071 33 1 8.4952 -2.5134 -4.7043 34 1 7.0190 -2.8082 -5.6543 35 1 7.7403 -0.0930 -5.9476 36 1 9.3789 0.7128 -7.7062 37 1 7.8654 -1.1207 -9.7516 38 1 8.3627 0.6334 -10.0293 39 1 10.7944 -0.0014 -9.6862 40 1 10.2978 -1.7556 -9.4085 41 1 3.7903 -1.5613 -3.0802 42 1 5.0117 -0.2694 -3.1755 43 1 3.0059 0.3449 -1.7663 44 1 4.5462 0.4053 -0.8695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752333052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = -2.891362 kcal Electronic energy + Delta-G solvation = -21929.927702 eV Core-core repulsion = 18689.853775 eV Total energy + Delta-G solvation = -3240.073926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99838 -40.02574 -37.56282 -36.84866 -35.82720 -33.87110 -32.36838 -31.82709 -28.83382 -26.58129 -24.96421 -24.82349 -23.70188 -23.29950 -22.16788 -21.12286 -20.79408 -18.81435 -18.42288 -17.64042 -17.01346 -16.82105 -16.18844 -15.93309 -15.92216 -15.81060 -15.56890 -15.36398 -14.93671 -14.62924 -14.42354 -13.88540 -13.59446 -13.54810 -13.30715 -12.96914 -12.71756 -12.57031 -12.44784 -12.23577 -12.05987 -11.94359 -11.73974 -11.55742 -11.50855 -11.44591 -11.38300 -10.94802 -10.72926 -10.14745 -9.35740 -8.90039 -8.17327 -5.49187 1.29410 1.42515 1.44806 1.52507 2.10177 2.41493 2.89151 2.92700 3.07390 3.36557 3.70613 3.86021 3.90432 3.97404 3.99437 4.07494 4.19991 4.23227 4.27010 4.41520 4.49648 4.52786 4.60390 4.61493 4.70773 4.73818 4.77170 4.85927 4.91846 4.96806 5.02461 5.02878 5.15531 5.16500 5.21773 5.29542 5.40855 5.81846 6.07617 6.10185 6.21244 6.51507 6.89133 7.20297 7.60309 8.02716 9.02607 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.003023 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.793506 B = 9260.121091 C = 9961.231180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.039 4.039 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.311 1.311 6 H -0.264 1.264 7 C -0.250 4.250 8 H 0.050 0.950 9 N -0.625 5.625 10 C 0.145 3.855 11 C 0.052 3.948 12 N -0.537 5.537 13 C 0.060 3.940 14 C -0.123 4.123 15 C 0.127 3.873 16 N -0.715 5.715 17 C 0.533 3.467 18 O -0.591 6.591 19 C -0.199 4.199 20 C -0.145 4.145 21 C -0.154 4.154 22 C 0.047 3.953 23 C 0.123 3.877 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.099 0.901 28 H 0.019 0.981 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.417 0.583 36 H 0.153 0.847 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.084 0.916 41 H 0.019 0.981 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.891 1.589 -16.242 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.233 4.233 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.240 1.240 6 H -0.188 1.188 7 C -0.380 4.380 8 H 0.068 0.932 9 N -0.351 5.351 10 C 0.020 3.980 11 C -0.078 4.078 12 N -0.262 5.262 13 C -0.068 4.068 14 C -0.161 4.161 15 C 0.003 3.997 16 N -0.366 5.366 17 C 0.321 3.679 18 O -0.472 6.472 19 C -0.220 4.220 20 C -0.182 4.182 21 C -0.191 4.191 22 C -0.083 4.083 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.254 0.746 36 H 0.171 0.829 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.102 0.898 41 H 0.037 0.963 42 H 0.123 0.877 43 H 0.071 0.929 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 21.297 1.106 -16.017 26.671 hybrid contribution -1.131 0.407 0.048 1.203 sum 20.166 1.514 -15.970 25.768 Atomic orbital electron populations 1.69977 1.07451 1.27290 1.55783 1.25931 0.95909 1.01166 1.00314 0.85841 0.78395 0.79774 0.77927 1.19419 1.24029 1.18842 1.18870 0.86625 0.93613 1.38881 0.93220 1.44575 1.07701 1.33553 1.49225 1.21177 0.91588 0.90710 0.94477 1.22485 0.97232 0.93154 0.94885 1.61999 1.23701 1.18966 1.21565 1.22059 0.97632 0.95803 0.91338 1.21823 1.00239 0.98949 0.95079 1.21191 0.98536 0.90479 0.89541 1.45874 1.52910 1.13026 1.24798 1.20303 0.77002 0.88903 0.81664 1.90681 1.57339 1.23038 1.76184 1.22300 1.09396 1.00154 0.90162 1.23033 0.96319 1.04599 0.94263 1.23012 0.94913 1.02854 0.98334 1.22599 0.93011 0.96465 0.96197 1.21497 0.96065 0.92014 0.90624 0.92915 0.92250 0.94419 0.88233 0.96221 0.89166 0.95149 0.90587 0.89279 0.91693 0.92729 0.74592 0.82897 0.89690 0.85065 0.85477 0.89776 0.96253 0.87741 0.92875 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.65 13.97 21.65 0.30 -60.35 16 2 C -0.04 -2.28 5.24 84.86 0.44 -1.84 16 3 Si 0.95 46.51 24.30 68.60 1.67 48.18 16 4 H -0.27 -12.05 6.58 99.48 0.65 -11.40 16 5 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 6 H -0.26 -12.48 6.61 99.48 0.66 -11.83 16 7 C -0.25 -14.42 10.08 84.03 0.85 -13.57 16 8 H 0.05 3.13 8.05 -2.91 -0.02 3.11 16 9 N -0.63 -29.86 2.82 -698.12 -1.97 -31.83 16 10 C 0.15 5.66 6.69 86.35 0.58 6.24 16 11 C 0.05 1.61 5.58 86.39 0.48 2.09 16 12 N -0.54 -15.56 4.78 -895.24 -4.28 -19.84 16 13 C 0.06 1.28 5.27 86.30 0.45 1.74 16 14 C -0.12 -2.10 4.58 30.59 0.14 -1.96 16 15 C 0.13 2.26 5.67 86.38 0.49 2.75 16 16 N -0.71 -11.28 5.56 -463.05 -2.57 -13.85 16 17 C 0.53 10.72 7.61 87.66 0.67 11.38 16 18 O -0.59 -17.35 16.26 -3.06 -0.05 -17.40 16 19 C -0.20 -2.51 6.19 -11.54 -0.07 -2.59 16 20 C -0.14 -1.57 10.23 30.59 0.31 -1.26 16 21 C -0.15 -1.91 10.04 30.60 0.31 -1.61 16 22 C 0.05 1.51 5.04 86.39 0.44 1.95 16 23 C 0.12 5.16 4.35 86.35 0.38 5.54 16 24 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 25 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 0.69 8.08 -2.38 -0.02 0.67 16 31 H 0.08 1.32 6.18 -2.39 -0.01 1.31 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.42 4.14 8.47 -92.71 -0.79 3.36 16 36 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.46 7.67 -2.39 -0.02 1.45 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 2.69 5.73 -2.39 -0.01 2.68 16 43 H 0.05 2.44 4.60 -2.39 -0.01 2.43 16 44 H 0.04 1.51 6.94 -2.39 -0.02 1.50 16 Total: -1.00 -74.76 344.23 -1.34 -76.10 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.09 Total: 10.12 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.46 Total: 8.88 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -8.52 Total: -125.87 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.67 Total: 48.18 kcal Total: -74.76 -1.34 -76.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752333052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.205 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds