Wall clock time and date at job start Tue Mar 31 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46824 * 2 1 4 4 N 1.46901 * 109.46705 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00391 * 66.04890 * 4 3 2 6 6 C 1.46906 * 110.99627 * 190.00329 * 4 3 2 7 7 C 1.50700 * 109.47030 * 170.00094 * 6 4 3 8 8 O 1.21279 * 119.99893 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00288 * 179.72084 * 7 6 4 10 10 C 1.47874 * 126.94157 * 359.96103 * 9 7 6 11 11 C 1.55997 * 105.11449 * 181.90848 * 10 9 7 12 12 H 1.08997 * 116.82142 * 159.40608 * 11 10 9 13 13 C 1.57084 * 99.48510 * 33.13090 * 11 10 9 14 14 C 1.49289 * 126.95106 * 180.27536 * 9 7 6 15 15 H 1.09000 * 116.14669 * 15.81550 * 14 9 7 16 16 C 1.56017 * 104.09002 * 246.67891 * 14 9 7 17 17 N 1.47864 * 105.10508 * 288.76021 * 16 14 9 18 18 C 1.36942 * 126.94467 * 181.98235 * 17 16 14 19 19 H 1.07995 * 119.99786 * 173.69107 * 18 17 16 20 20 C 1.38805 * 119.99987 * 353.69118 * 18 17 16 21 21 N 1.31623 * 120.00035 * 6.44118 * 20 18 17 22 22 Si 1.86803 * 120.00113 * 186.43773 * 20 18 17 23 23 H 1.48496 * 109.47212 * 94.98233 * 22 20 18 24 24 H 1.48498 * 109.47370 * 214.98609 * 22 20 18 25 25 H 1.48504 * 109.47001 * 334.98547 * 22 20 18 26 26 H 1.09000 * 109.47643 * 60.00085 * 1 2 3 27 27 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46978 * 299.99737 * 1 2 3 29 29 H 1.08998 * 109.47021 * 239.99936 * 2 1 3 30 30 H 1.08997 * 109.47208 * 120.00191 * 2 1 3 31 31 H 1.09006 * 109.47128 * 60.00355 * 3 2 1 32 32 H 1.08997 * 109.47384 * 300.00083 * 3 2 1 33 33 H 1.08994 * 109.47286 * 183.95138 * 5 4 3 34 34 H 1.09002 * 109.46848 * 303.95724 * 5 4 3 35 35 H 1.09002 * 109.46955 * 63.95077 * 5 4 3 36 36 H 1.08997 * 109.47264 * 50.00030 * 6 4 3 37 37 H 1.09002 * 109.46738 * 289.99919 * 6 4 3 38 38 H 1.09003 * 110.31193 * 300.92711 * 10 9 7 39 39 H 1.09005 * 110.31436 * 63.11173 * 10 9 7 40 40 H 1.09001 * 112.36180 * 191.52954 * 13 11 10 41 41 H 1.09004 * 112.36352 * 64.09501 * 13 11 10 42 42 H 1.09004 * 110.32042 * 47.67223 * 16 14 9 43 43 H 1.09007 * 110.31260 * 169.85745 * 16 14 9 44 44 H 0.97004 * 119.99925 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0349 0.8859 -1.2542 6 6 4.0354 2.7931 0.2376 7 6 5.5219 2.7183 0.4743 8 8 6.0869 1.6455 0.4477 9 7 6.2242 3.8441 0.7105 10 6 5.6970 5.2243 0.7707 11 6 6.9450 6.1259 1.0220 12 1 6.8503 7.1802 0.7624 13 6 8.0229 5.3025 0.2297 14 6 7.6926 3.9505 0.9578 15 1 8.2897 3.0799 0.6864 16 6 7.7947 4.4219 2.4415 17 7 7.3372 5.8280 2.4314 18 6 7.2836 6.6838 3.4991 19 1 7.0258 7.7214 3.3470 20 6 7.5605 6.2176 4.7768 21 7 7.9972 4.9878 4.9484 22 14 7.3137 7.3355 6.2529 23 1 5.9709 7.0927 6.8387 24 1 8.3567 7.0494 7.2705 25 1 7.4172 8.7531 5.8230 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 5.1222 0.8327 -1.2001 34 1 3.6292 -0.1143 -1.4061 35 1 3.7435 1.5265 -2.0866 36 1 3.5493 3.2234 1.1132 37 1 3.8371 3.4190 -0.6325 38 1 5.2208 5.4890 -0.1734 39 1 4.9888 5.3233 1.5935 40 1 9.0376 5.6454 0.4317 41 1 7.8104 5.2611 -0.8386 42 1 7.1466 3.8175 3.0762 43 1 8.8268 4.3623 2.7873 44 1 8.1904 4.6618 5.8414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753426818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:55 Heat of formation + Delta-G solvation = 29.657844 kcal Electronic energy + Delta-G solvation = -23007.876698 eV Core-core repulsion = 19769.214211 eV Total energy + Delta-G solvation = -3238.662487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09439 -38.48631 -36.81462 -33.60406 -33.22063 -31.59696 -29.32057 -28.60132 -27.72057 -26.99776 -25.18468 -23.81686 -22.89104 -20.89244 -20.31317 -19.82146 -18.36391 -17.20631 -16.41609 -15.93817 -15.70729 -15.37122 -14.96696 -14.66907 -14.14147 -14.05970 -13.64560 -13.28730 -13.13075 -12.80298 -12.21439 -12.16842 -11.95769 -11.81424 -11.70652 -11.62460 -11.36830 -11.32217 -11.18212 -10.98492 -10.86964 -10.78467 -10.66231 -10.58979 -10.23692 -10.06969 -9.64951 -9.30045 -8.69002 -8.27012 -7.94612 -6.92143 -5.78196 -3.12226 3.10551 3.27787 3.37027 3.41755 3.44782 4.03245 4.41491 4.76317 4.84045 4.90968 5.10556 5.18511 5.19946 5.27606 5.32542 5.34303 5.44136 5.48399 5.55134 5.56404 5.62880 5.65512 5.70269 5.78038 5.85858 5.92773 6.02320 6.10713 6.17261 6.24426 6.30450 6.41338 6.49255 6.59284 6.69280 6.97040 7.08579 7.40862 7.53377 7.72711 8.09360 8.15726 8.69485 9.09452 9.70655 10.40381 11.34100 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.004188 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.526809 B = 6683.403294 C = 7386.616199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.525 5.525 5 C 0.018 3.982 6 C 0.043 3.957 7 C 0.529 3.471 8 O -0.539 6.539 9 N -0.609 5.609 10 C 0.084 3.916 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.152 4.152 14 C 0.100 3.900 15 H 0.113 0.887 16 C 0.173 3.827 17 N -0.597 5.597 18 C -0.234 4.234 19 H 0.081 0.919 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.016 0.984 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 -3.633 -12.850 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.249 5.249 5 C -0.129 4.129 6 C -0.088 4.088 7 C 0.317 3.683 8 O -0.416 6.416 9 N -0.343 5.343 10 C -0.042 4.042 11 C 0.032 3.968 12 H 0.124 0.876 13 C -0.191 4.191 14 C -0.003 4.003 15 H 0.131 0.869 16 C 0.048 3.952 17 N -0.322 5.322 18 C -0.362 4.362 19 H 0.098 0.902 20 C -0.201 4.201 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.699 -4.586 -12.187 16.237 hybrid contribution -0.537 1.113 0.293 1.270 sum -10.236 -3.473 -11.894 16.072 Atomic orbital electron populations 1.21739 0.95713 1.01670 1.01705 1.21536 0.95126 0.96354 1.02908 1.22199 0.86921 0.97466 1.00688 1.61607 1.06870 1.20417 1.36011 1.22592 1.03095 0.99061 0.88200 1.21928 0.93798 0.90744 1.02302 1.19939 0.88419 0.82936 0.76981 1.90621 1.71339 1.27609 1.52076 1.49222 1.09518 1.06307 1.69290 1.23259 0.99225 0.82178 0.99500 1.23158 0.90719 0.96169 0.86776 0.87638 1.24161 1.00660 0.96551 0.97775 1.24304 0.80085 0.96943 0.98963 0.86940 1.21940 0.99514 0.84941 0.88770 1.45240 1.74776 1.09752 1.02384 1.19039 1.41647 0.91000 0.84529 0.90167 1.24849 1.01236 0.96583 0.97438 1.69939 1.49332 1.15693 1.21222 0.86125 0.77496 0.79521 0.82739 1.21620 1.21758 1.20584 0.92993 0.92595 0.92610 0.91945 0.90930 0.90735 0.95078 0.89240 0.91443 0.96551 0.88136 0.92500 0.93031 0.91113 0.89843 0.91744 0.93106 0.93104 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.21 5.87 -26.73 -0.16 -1.36 16 3 C 0.06 0.62 4.96 -3.82 -0.02 0.60 16 4 N -0.53 -7.47 4.50 -244.37 -1.10 -8.57 16 5 C 0.02 0.24 9.01 60.06 0.54 0.78 16 6 C 0.04 0.63 4.73 -4.97 -0.02 0.61 16 7 C 0.53 9.78 7.62 -10.99 -0.08 9.70 16 8 O -0.54 -11.55 14.65 5.56 0.08 -11.47 16 9 N -0.61 -11.23 2.95 -156.80 -0.46 -11.69 16 10 C 0.08 1.41 6.01 -1.68 -0.01 1.40 16 11 C 0.14 2.57 5.52 -62.56 -0.35 2.22 16 12 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 13 C -0.15 -2.55 6.80 -22.31 -0.15 -2.70 16 14 C 0.10 1.94 5.24 -62.56 -0.33 1.61 16 15 H 0.11 2.15 8.05 -51.93 -0.42 1.73 16 16 C 0.17 4.18 4.77 -1.68 -0.01 4.17 16 17 N -0.60 -14.29 3.03 -156.35 -0.47 -14.76 16 18 C -0.23 -6.20 10.36 -15.06 -0.16 -6.35 16 19 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 20 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 21 N -0.92 -26.75 10.61 55.49 0.59 -26.16 16 22 Si 0.91 21.63 29.56 -169.99 -5.02 16.61 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.61 6.47 -51.93 -0.34 0.27 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 32 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.09 1.41 5.88 -51.93 -0.31 1.11 16 34 H 0.07 0.79 6.30 -51.93 -0.33 0.46 16 35 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.10 1.43 7.93 -51.93 -0.41 1.02 16 37 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 1.42 7.53 -51.93 -0.39 1.03 16 43 H 0.05 1.35 7.64 -51.93 -0.40 0.95 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -31.34 344.46 -9.28 -40.63 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.62 Total: 0.61 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -0.47 Total: 9.63 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -1.45 Total: -61.19 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.34 -9.28 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753426818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.284 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds