Wall clock time and date at job start Tue Mar 31 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46483 * 2 1 4 4 C 1.53003 * 109.46891 * 119.99742 * 2 1 3 5 5 N 1.46501 * 109.46733 * 174.99903 * 4 2 1 6 6 C 1.36936 * 119.99576 * 179.72517 * 5 4 2 7 7 H 1.08000 * 120.00211 * 0.27956 * 6 5 4 8 8 C 1.38815 * 119.99636 * 180.28117 * 6 5 4 9 9 N 1.31611 * 120.00100 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99815 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47029 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47136 * 119.99360 * 10 8 6 13 13 H 1.48496 * 109.46967 * 240.00014 * 10 8 6 14 14 N 1.46493 * 109.47345 * 240.00142 * 2 1 3 15 15 C 1.46503 * 119.99767 * 300.00035 * 14 2 1 16 16 C 1.34771 * 120.00185 * 119.99721 * 14 2 1 17 17 O 1.21283 * 120.00076 * 355.54130 * 16 14 2 18 18 C 1.50703 * 120.00482 * 175.53384 * 16 14 2 19 19 C 1.56240 * 116.69173 * 291.53354 * 18 16 14 20 20 C 1.56948 * 102.16435 * 200.70668 * 19 18 16 21 21 N 1.49518 * 105.46551 * 358.87124 * 20 19 18 22 22 C 1.49517 * 105.92252 * 289.05797 * 21 20 19 23 23 C 1.54656 * 105.28393 * 71.26486 * 22 21 20 24 24 C 1.50460 * 102.03914 * 35.47276 * 21 20 19 25 25 H 1.09002 * 109.47590 * 300.00196 * 1 2 3 26 26 H 1.08997 * 109.47169 * 59.99745 * 1 2 3 27 27 H 1.08999 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46866 * 55.00257 * 4 2 1 29 29 H 1.08998 * 109.47221 * 295.00307 * 4 2 1 30 30 H 0.96997 * 119.99921 * 0.02562 * 5 4 2 31 31 H 0.97007 * 120.00212 * 180.02562 * 9 8 6 32 32 H 1.09008 * 109.47261 * 95.21813 * 15 14 2 33 33 H 1.09005 * 109.46758 * 215.21577 * 15 14 2 34 34 H 1.08992 * 109.47572 * 335.21545 * 15 14 2 35 35 H 1.09004 * 110.66448 * 319.47319 * 19 18 16 36 36 H 1.08997 * 110.67190 * 82.60231 * 19 18 16 37 37 H 1.08997 * 109.91910 * 239.99634 * 20 19 18 38 38 H 1.08997 * 110.45867 * 118.02221 * 20 19 18 39 39 H 1.09004 * 110.28404 * 312.30883 * 22 21 20 40 40 H 1.08997 * 110.28102 * 190.21913 * 22 21 20 41 41 H 1.08996 * 110.66854 * 242.22522 * 23 22 21 42 42 H 1.09002 * 110.66563 * 119.09053 * 23 22 21 43 43 H 1.09001 * 111.90899 * 188.39841 * 24 21 20 44 44 H 1.09004 * 111.91069 * 62.18818 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1842 -1.4333 2.2097 7 1 3.6471 -1.8385 3.0546 8 6 5.5681 -1.5278 2.1569 9 7 6.2226 -1.0344 1.1271 10 14 6.5015 -2.3564 3.5468 11 1 5.5409 -2.8240 4.5783 12 1 7.2581 -3.5169 3.0121 13 1 7.4472 -1.3866 4.1551 14 7 2.0184 -0.6905 -1.1961 15 6 1.6644 -2.0931 -1.4279 16 6 2.7932 -0.0355 -2.0832 17 8 3.0196 1.1466 -1.9340 18 6 3.3784 -0.7719 -3.2607 19 6 4.4773 -1.8372 -2.9466 20 6 5.2093 -1.9745 -4.3281 21 7 4.4855 -1.0524 -5.2562 22 6 3.1548 -1.6857 -5.5085 23 6 2.3723 -1.5320 -4.1834 24 6 4.1223 0.0885 -4.3450 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.9823 -0.4622 0.4319 31 1 7.1896 -1.1007 1.0900 32 1 0.7900 -2.1448 -2.0768 33 1 2.5009 -2.6050 -1.9040 34 1 1.4391 -2.5732 -0.4758 35 1 5.1531 -1.4757 -2.1715 36 1 4.0231 -2.7832 -2.6518 37 1 5.1388 -3.0020 -4.6852 38 1 6.2536 -1.6760 -4.2373 39 1 3.2787 -2.7405 -5.7540 40 1 2.6367 -1.1677 -6.3155 41 1 2.1287 -2.5085 -3.7650 42 1 1.4689 -0.9416 -4.3364 43 1 3.4529 0.7991 -4.8299 44 1 5.0054 0.5808 -3.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753721452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:03 Heat of formation + Delta-G solvation = 10.663525 kcal Electronic energy + Delta-G solvation = -24053.819621 eV Core-core repulsion = 20814.333478 eV Total energy + Delta-G solvation = -3239.486142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09215 -38.93749 -36.28809 -34.03480 -32.26181 -30.50410 -30.46166 -29.65816 -28.03467 -26.63061 -25.64485 -23.13986 -22.46559 -22.26389 -20.67794 -19.68359 -18.60699 -17.07227 -16.46334 -16.12617 -15.98324 -15.31059 -14.87923 -14.72491 -14.18723 -13.64202 -13.30175 -13.21338 -12.96557 -12.69497 -12.58956 -12.30500 -12.20974 -12.11397 -12.00612 -11.79309 -11.64953 -11.46374 -11.35709 -11.12023 -10.87573 -10.77354 -10.54016 -10.38559 -10.16556 -10.02820 -9.71421 -9.35362 -8.99995 -8.88268 -8.24100 -6.90708 -5.74857 -3.03755 2.92877 3.29995 3.42206 3.47979 3.50183 3.89577 4.48749 4.57255 4.59101 4.84822 4.98281 5.05022 5.13596 5.23862 5.29587 5.36994 5.42858 5.53039 5.55587 5.57456 5.62043 5.66886 5.68849 5.73525 5.78824 5.90951 5.97952 6.02895 6.06676 6.10207 6.17819 6.19303 6.33989 6.37460 6.50457 6.58308 6.67417 6.72029 7.00731 7.69661 7.76226 8.42720 8.56521 9.54567 10.12813 10.48621 11.47238 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.006412 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.314882 B = 4365.560106 C = 5496.916796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.143 3.857 5 N -0.727 5.727 6 C -0.240 4.240 7 H 0.069 0.931 8 C -0.012 4.012 9 N -0.928 5.928 10 Si 0.904 3.096 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.591 5.591 15 C 0.077 3.923 16 C 0.556 3.444 17 O -0.538 6.538 18 C -0.124 4.124 19 C -0.132 4.132 20 C 0.014 3.986 21 N -0.468 5.468 22 C 0.013 3.987 23 C -0.140 4.140 24 C 0.041 3.959 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.020 0.980 29 H 0.028 0.972 30 H 0.386 0.614 31 H 0.254 0.746 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.390 -3.301 -11.777 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.371 5.371 6 C -0.371 4.371 7 H 0.087 0.913 8 C -0.208 4.208 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.207 1.207 12 H -0.220 1.220 13 H -0.219 1.219 14 N -0.323 5.323 15 C -0.066 4.066 16 C 0.343 3.657 17 O -0.414 6.414 18 C -0.129 4.129 19 C -0.171 4.171 20 C -0.115 4.115 21 N -0.188 5.188 22 C -0.116 4.116 23 C -0.179 4.179 24 C -0.088 4.088 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.220 0.780 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.842 -2.616 -12.194 15.887 hybrid contribution 0.215 -0.791 1.472 1.685 sum -9.627 -3.407 -10.722 14.807 Atomic orbital electron populations 1.22044 0.95201 1.01973 1.01994 1.21401 0.93299 0.98499 0.84636 0.88261 1.21010 0.87170 0.96714 0.93642 1.42290 0.99624 1.70275 1.24948 1.19245 0.89395 1.29437 0.99013 0.91299 1.24723 0.96395 1.01680 0.98016 1.69682 1.07003 1.50825 1.30106 0.86159 0.79963 0.78720 0.81577 1.20664 1.21958 1.21906 1.47558 1.50401 1.12116 1.22264 1.21952 1.00076 0.82301 1.02280 1.19362 0.77542 0.86512 0.82270 1.90680 1.59668 1.15572 1.75496 1.23674 0.97315 0.97123 0.94764 1.23657 0.97002 0.97571 0.98902 1.24006 0.99471 0.97290 0.90731 1.69980 1.12600 1.05406 1.30783 1.23590 0.90826 1.00265 0.96935 1.23392 0.98172 1.00616 0.95702 1.24296 0.99907 0.94173 0.90454 0.91461 0.92707 0.92475 0.96210 0.95426 0.78024 0.93649 0.93472 0.90836 0.90581 0.88843 0.90516 0.90669 0.89549 0.90503 0.90075 0.90229 0.91173 0.89476 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.19 37.16 0.34 -1.65 16 2 C 0.12 2.15 2.79 -67.93 -0.19 1.96 16 3 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 4 C 0.14 2.87 5.52 -4.04 -0.02 2.85 16 5 N -0.73 -18.51 5.43 -59.91 -0.33 -18.84 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 10 Si 0.90 22.42 29.55 -169.99 -5.02 17.39 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 14 N -0.59 -9.77 2.24 -173.93 -0.39 -10.16 16 15 C 0.08 1.03 7.90 59.85 0.47 1.51 16 16 C 0.56 10.09 6.89 -10.99 -0.08 10.01 16 17 O -0.54 -11.71 15.92 5.56 0.09 -11.62 16 18 C -0.12 -1.83 0.92 -149.93 -0.14 -1.97 16 19 C -0.13 -2.00 5.68 -22.85 -0.13 -2.13 16 20 C 0.01 0.18 6.67 -0.23 0.00 0.18 16 21 N -0.47 -6.07 6.94 -220.55 -1.53 -7.60 16 22 C 0.01 0.14 6.61 -1.49 -0.01 0.13 16 23 C -0.14 -1.57 4.79 -24.12 -0.12 -1.68 16 24 C 0.04 0.59 6.09 0.43 0.00 0.60 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.02 0.39 6.86 -51.93 -0.36 0.03 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.39 10.64 7.06 -40.82 -0.29 10.35 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.05 0.50 7.70 -51.92 -0.40 0.10 16 33 H 0.07 0.98 3.70 -51.93 -0.19 0.79 16 34 H 0.08 1.06 6.53 -51.93 -0.34 0.72 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.08 1.08 5.97 -51.93 -0.31 0.77 16 37 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.80 5.86 -51.93 -0.30 0.49 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -32.12 336.08 -8.60 -40.72 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.10 Total: 9.75 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.11 Total: 2.52 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -1.52 Total: -63.84 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.12 -8.60 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753721452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.387 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds