Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.90746 * 2 1 4 4 C 1.53994 * 109.91958 * 238.89476 * 2 1 3 5 5 H 1.08995 * 110.38960 * 120.45952 * 4 2 1 6 6 C 1.50703 * 110.30504 * 358.33901 * 4 2 1 7 7 O 1.21281 * 119.99973 * 272.27253 * 6 4 2 8 8 N 1.34777 * 120.00170 * 92.28183 * 6 4 2 9 9 C 1.46498 * 119.99936 * 184.44670 * 8 6 4 10 10 C 1.53001 * 109.47143 * 184.96395 * 9 8 6 11 11 N 1.46504 * 115.55013 * 277.09754 * 10 9 8 12 12 C 1.36932 * 120.00115 * 294.76691 * 11 10 9 13 13 H 1.08009 * 120.00134 * 4.70360 * 12 11 10 14 14 C 1.38809 * 120.00136 * 184.70177 * 12 11 10 15 15 N 1.31624 * 119.99760 * 5.27292 * 14 12 11 16 16 Si 1.86804 * 120.00260 * 185.26635 * 14 12 11 17 17 H 1.48506 * 109.46646 * 65.00073 * 16 14 12 18 18 H 1.48497 * 109.47248 * 184.99981 * 16 14 12 19 19 H 1.48502 * 109.47275 * 305.00602 * 16 14 12 20 20 C 1.52993 * 117.49835 * 131.42863 * 10 9 8 21 21 C 1.52998 * 117.49604 * 62.76669 * 10 9 8 22 22 C 1.54591 * 105.14153 * 239.42339 * 4 2 1 23 23 C 1.54938 * 102.92083 * 338.03941 * 22 4 2 24 24 N 1.48066 * 109.99492 * 121.15747 * 2 1 3 25 25 C 1.46907 * 111.15789 * 265.07957 * 24 2 1 26 26 H 1.09008 * 109.46964 * 184.40961 * 1 2 3 27 27 H 1.09000 * 109.47515 * 304.40358 * 1 2 3 28 28 H 1.09001 * 109.47081 * 64.41166 * 1 2 3 29 29 H 0.96997 * 120.00234 * 4.44453 * 8 6 4 30 30 H 1.08997 * 109.47341 * 304.96917 * 9 8 6 31 31 H 1.09003 * 109.47237 * 64.96639 * 9 8 6 32 32 H 0.97001 * 119.99867 * 114.76608 * 11 10 9 33 33 H 0.97002 * 119.99612 * 179.97438 * 15 14 12 34 34 H 1.09001 * 117.50349 * 0.02562 * 20 10 9 35 35 H 1.08997 * 117.50037 * 145.02207 * 20 10 9 36 36 H 1.08999 * 117.49731 * 214.97438 * 21 10 9 37 37 H 1.08995 * 117.49849 * 359.97438 * 21 10 9 38 38 H 1.09000 * 110.72109 * 219.68792 * 22 4 2 39 39 H 1.08992 * 110.72953 * 96.39937 * 22 4 2 40 40 H 1.08997 * 110.67020 * 155.85198 * 23 22 4 41 41 H 1.09002 * 110.67070 * 278.81395 * 23 22 4 42 42 H 1.08996 * 109.46949 * 302.47256 * 25 24 2 43 43 H 1.08995 * 109.47269 * 62.48225 * 25 24 2 44 44 H 1.08999 * 109.46534 * 182.47926 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0547 -0.7480 -1.2396 5 1 2.6710 -0.0872 -1.8492 6 6 0.9046 -1.2857 -2.0516 7 8 0.4435 -2.3789 -1.8000 8 7 0.3885 -0.5519 -3.0574 9 6 -0.7905 -1.0307 -3.7832 10 6 -1.0946 -0.0819 -4.9444 11 7 -1.8648 1.1150 -4.5974 12 6 -3.1555 0.9947 -4.1562 13 1 -3.5809 0.0157 -3.9915 14 6 -3.9172 2.1310 -3.9206 15 7 -3.4362 3.3193 -4.2191 16 14 -5.6249 1.9737 -3.1800 17 1 -5.5183 1.4353 -1.8001 18 1 -6.2728 3.3093 -3.1416 19 1 -6.4412 1.0512 -4.0095 20 6 -1.3392 -0.7050 -6.3202 21 6 -0.0379 0.0517 -6.0427 22 6 2.9059 -1.9105 -0.6795 23 6 3.2682 -1.4198 0.7447 24 7 2.0363 -0.7199 1.1907 25 6 2.3280 0.2112 2.2890 26 1 -0.3633 -1.0247 0.0790 27 1 -0.3634 0.5806 0.8479 28 1 -0.3633 0.4439 -0.9269 29 1 0.7977 0.2932 -3.3007 30 1 -0.5968 -2.0304 -4.1719 31 1 -1.6450 -1.0630 -3.1072 32 1 -1.4603 1.9928 -4.6801 33 1 -3.9687 4.1132 -4.0548 34 1 -1.2840 -1.7908 -6.3981 35 1 -2.0728 -0.2241 -6.9672 36 1 0.0841 1.0301 -6.5074 37 1 0.8741 -0.5358 -5.9377 38 1 3.8053 -2.0534 -1.2786 39 1 2.3215 -2.8294 -0.6339 40 1 3.4889 -2.2639 1.3980 41 1 4.1117 -0.7302 0.7111 42 1 3.0520 0.9536 1.9532 43 1 1.4093 0.7117 2.5947 44 1 2.7393 -0.3412 3.1338 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754515622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = 6.915755 kcal Electronic energy + Delta-G solvation = -23006.035367 eV Core-core repulsion = 19766.386709 eV Total energy + Delta-G solvation = -3239.648658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37727 -38.31534 -37.26315 -33.74727 -33.01950 -32.36296 -31.32915 -29.71554 -27.40094 -25.72786 -24.91991 -23.90124 -22.14189 -21.54591 -20.95822 -19.56243 -18.75091 -17.13304 -16.87632 -16.33091 -15.52918 -15.49971 -14.94262 -14.66746 -14.47727 -14.16799 -13.84211 -13.28032 -13.24020 -13.08542 -12.60181 -12.53117 -12.12066 -11.93772 -11.87915 -11.64835 -11.40579 -11.14468 -11.04562 -10.95645 -10.86245 -10.83410 -10.75440 -10.29829 -10.28369 -9.71454 -9.59107 -9.29986 -8.83924 -8.57001 -8.55212 -7.08343 -5.84562 -3.14773 2.91934 3.41817 3.46492 3.46873 3.48116 3.84074 4.40754 4.49236 4.52243 4.60300 4.88600 5.07371 5.16882 5.20563 5.25582 5.27537 5.30813 5.34604 5.40848 5.47006 5.61312 5.64193 5.69727 5.76344 5.76873 5.82064 6.04406 6.08338 6.09106 6.17995 6.25854 6.43179 6.54316 6.57429 6.67398 6.77989 6.78418 6.88647 6.94033 7.68425 7.90529 8.33611 8.57589 9.44629 9.98072 10.33560 11.37050 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.004899 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.457819 B = 5713.727254 C = 6806.177292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 H 0.059 0.941 4 C -0.119 4.119 5 H 0.091 0.909 6 C 0.527 3.473 7 O -0.543 6.543 8 N -0.714 5.714 9 C 0.148 3.852 10 C 0.128 3.872 11 N -0.688 5.688 12 C -0.238 4.238 13 H 0.072 0.928 14 C -0.008 4.008 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.284 1.284 20 C -0.187 4.187 21 C -0.186 4.186 22 C -0.111 4.111 23 C 0.036 3.964 24 N -0.515 5.515 25 C 0.017 3.983 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.399 0.601 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.133 -6.063 6.117 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 H 0.077 0.923 4 C -0.141 4.141 5 H 0.109 0.891 6 C 0.312 3.688 7 O -0.421 6.421 8 N -0.364 5.364 9 C 0.022 3.978 10 C 0.034 3.966 11 N -0.328 5.328 12 C -0.369 4.369 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.210 1.210 20 C -0.228 4.228 21 C -0.223 4.223 22 C -0.149 4.149 23 C -0.092 4.092 24 N -0.240 5.240 25 C -0.132 4.132 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.233 0.767 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.222 0.778 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.177 -7.193 6.564 17.199 hybrid contribution -0.081 1.494 -0.081 1.498 sum 14.096 -5.699 6.483 16.529 Atomic orbital electron populations 1.21969 0.92873 1.03514 1.02485 1.22264 0.97244 0.95248 0.87911 0.92297 1.22244 0.96282 0.98875 0.96708 0.89088 1.20076 0.83944 0.84925 0.79840 1.90662 1.62088 1.20876 1.68480 1.46008 1.31268 1.24399 1.34681 1.21242 0.87275 0.95637 0.93642 1.20181 0.97205 0.92060 0.87154 1.41770 1.11415 1.01471 1.78134 1.19117 0.88467 0.92742 1.36585 0.91032 1.24730 0.98481 0.95280 1.01947 1.69669 1.38035 0.97106 1.53077 0.86279 0.84137 0.76557 0.79333 1.21221 1.21708 1.21018 1.23370 0.98885 0.98300 1.02221 1.23066 0.92995 1.02039 1.04242 1.22499 0.99018 0.98800 0.94628 1.23226 0.91269 0.98401 0.96295 1.64729 1.26345 1.26379 1.06533 1.22514 1.00820 0.95109 0.94743 0.90979 0.92637 0.90951 0.76696 0.92166 0.90663 0.77822 0.93403 0.89971 0.88632 0.89051 0.89537 0.90860 0.88581 0.89850 0.93848 0.95501 0.91160 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.37 37.16 0.31 -2.00 16 2 C 0.08 1.05 3.09 -66.55 -0.21 0.84 16 3 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 4 C -0.12 -1.47 3.38 -90.42 -0.31 -1.77 16 5 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 6 C 0.53 8.23 4.75 -10.98 -0.05 8.18 16 7 O -0.54 -10.39 15.05 5.56 0.08 -10.31 16 8 N -0.71 -11.03 4.85 -60.29 -0.29 -11.32 16 9 C 0.15 2.65 5.77 -4.04 -0.02 2.62 16 10 C 0.13 2.40 2.16 -131.82 -0.29 2.12 16 11 N -0.69 -16.14 5.49 -47.23 -0.26 -16.40 16 12 C -0.24 -6.34 9.53 -15.06 -0.14 -6.48 16 13 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 15 N -0.93 -27.09 13.08 55.49 0.73 -26.37 16 16 Si 0.91 22.10 29.56 -169.99 -5.02 17.08 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.19 -3.24 10.11 -26.70 -0.27 -3.51 16 21 C -0.19 -2.91 10.07 -26.69 -0.27 -3.18 16 22 C -0.11 -1.25 6.56 -24.87 -0.16 -1.41 16 23 C 0.04 0.36 6.55 -1.90 -0.01 0.35 16 24 N -0.52 -6.24 5.19 -230.65 -1.20 -7.44 16 25 C 0.02 0.16 9.42 60.07 0.57 0.73 16 26 H 0.07 1.26 7.19 -51.92 -0.37 0.89 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.22 6.91 -51.93 -0.36 0.86 16 29 H 0.40 5.57 8.45 -40.82 -0.35 5.23 16 30 H 0.06 1.05 7.88 -51.93 -0.41 0.64 16 31 H 0.08 1.57 7.72 -51.93 -0.40 1.17 16 32 H 0.39 9.64 8.06 -40.82 -0.33 9.31 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.31 6.87 -51.93 -0.36 0.96 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.38 7.99 -51.93 -0.42 -0.03 16 42 H 0.03 0.24 8.00 -51.93 -0.42 -0.18 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -30.33 354.06 -9.15 -39.48 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -7.57 Total: 13.77 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.95 Total: -3.83 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -1.02 Total: -61.52 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.33 -9.15 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754515622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.393 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds