Wall clock time and date at job start Tue Mar 31 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00129 * 2 1 4 4 H 1.48511 * 109.47067 * 269.99537 * 3 2 1 5 5 H 1.48496 * 109.47484 * 29.99141 * 3 2 1 6 6 H 1.48501 * 109.47371 * 149.99657 * 3 2 1 7 7 C 1.38814 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99577 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99979 * 180.02562 * 9 7 2 11 11 C 1.53121 * 109.51922 * 155.00278 * 10 9 7 12 12 C 1.53038 * 109.27328 * 177.56141 * 11 10 9 13 13 N 1.46853 * 109.52551 * 300.81897 * 12 11 10 14 14 C 1.46896 * 111.00259 * 185.83854 * 13 12 11 15 15 C 1.52996 * 109.47256 * 170.00129 * 14 13 12 16 16 N 1.46498 * 109.47059 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 14 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 C 1.52994 * 117.49943 * 248.75083 * 19 17 16 21 21 C 1.52991 * 117.50225 * 180.09120 * 19 17 16 22 22 C 1.46847 * 111.19320 * 61.74721 * 13 12 11 23 23 C 1.53037 * 109.52174 * 298.25536 * 22 13 12 24 24 H 0.97002 * 119.99870 * 0.02562 * 1 2 3 25 25 H 0.96994 * 119.99921 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.52271 * 34.88173 * 10 9 7 27 27 H 1.08997 * 109.50043 * 57.62705 * 11 10 9 28 28 H 1.08988 * 109.50263 * 297.50060 * 11 10 9 29 29 H 1.08996 * 109.45989 * 180.80659 * 12 11 10 30 30 H 1.08998 * 109.45455 * 60.83050 * 12 11 10 31 31 H 1.09004 * 109.46774 * 50.00328 * 14 13 12 32 32 H 1.09000 * 109.47249 * 290.00954 * 14 13 12 33 33 H 1.09004 * 109.47066 * 60.00378 * 15 14 13 34 34 H 1.08994 * 109.46974 * 300.00526 * 15 14 13 35 35 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 36 36 H 1.09000 * 115.54637 * 34.42075 * 19 17 16 37 37 H 1.09005 * 117.50098 * 359.97438 * 20 19 17 38 38 H 1.09004 * 117.49838 * 145.01994 * 20 19 17 39 39 H 1.08998 * 117.50043 * 214.98404 * 21 19 17 40 40 H 1.09006 * 117.50115 * 359.97334 * 21 19 17 41 41 H 1.08997 * 109.46766 * 58.27343 * 22 13 12 42 42 H 1.09002 * 109.46309 * 178.24278 * 22 13 12 43 43 H 1.08995 * 109.50847 * 299.23950 * 23 22 13 44 44 H 1.09007 * 109.50451 * 179.12326 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.5005 -2.2602 -0.6104 12 6 6.2827 -3.5743 -0.5522 13 7 6.4037 -4.0119 0.8444 14 6 7.2663 -5.1961 0.9522 15 6 7.5706 -5.4729 2.4259 16 7 8.4314 -6.6535 2.5333 17 6 8.8357 -7.0847 3.7445 18 8 8.4827 -6.4984 4.7459 19 6 9.7262 -8.2954 3.8548 20 6 9.1259 -9.5601 4.4720 21 6 10.1490 -8.7361 5.2575 22 6 5.0845 -4.2662 1.4372 23 6 4.2664 -2.9728 1.4383 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3622 -0.0004 26 1 3.5642 -3.2079 -0.5871 27 1 6.0333 -1.4943 -0.0469 28 1 5.3974 -1.9438 -1.6483 29 1 7.2769 -3.4240 -0.9730 30 1 5.7562 -4.3360 -1.1271 31 1 8.1983 -5.0166 0.4162 32 1 6.7576 -6.0569 0.5183 33 1 6.6386 -5.6523 2.9619 34 1 8.0793 -4.6121 2.8597 35 1 8.7139 -7.1223 1.7325 36 1 10.4482 -8.4229 3.0482 37 1 8.0868 -9.5163 4.7987 38 1 9.4532 -10.5197 4.0717 39 1 11.1490 -9.1537 5.3739 40 1 9.7834 -8.1500 6.1008 41 1 4.5637 -5.0247 0.8529 42 1 5.2082 -4.6185 2.4613 43 1 4.7797 -2.2180 2.0340 44 1 3.2816 -3.1654 1.8642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754846941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:18 Heat of formation + Delta-G solvation = 2.400993 kcal Electronic energy + Delta-G solvation = -21722.918230 eV Core-core repulsion = 18483.073797 eV Total energy + Delta-G solvation = -3239.844433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23050 -38.97594 -36.72238 -35.71809 -34.51853 -32.28566 -30.65796 -30.32579 -28.28659 -25.08934 -23.73710 -23.10975 -22.83419 -21.89955 -21.15241 -20.32412 -19.50696 -17.79921 -17.51466 -16.51125 -15.91893 -15.58828 -15.26536 -14.78979 -14.61241 -14.51625 -14.06966 -13.90922 -13.33153 -13.16630 -13.11457 -12.88148 -12.48591 -12.00488 -11.96669 -11.77744 -11.64778 -11.45910 -11.03989 -10.94795 -10.91277 -10.86381 -10.61091 -10.33153 -10.18168 -10.08014 -9.76980 -9.55512 -9.31296 -8.87449 -8.31803 -7.23724 -5.74893 -3.10001 2.21195 2.75153 3.40104 3.43774 3.46306 3.47723 3.96587 4.31330 4.40912 4.46861 4.61656 4.64055 4.73158 4.86811 5.07014 5.17448 5.18008 5.24991 5.33274 5.35182 5.48379 5.52705 5.57486 5.61897 5.68338 5.72550 5.78404 5.81175 5.95678 6.06402 6.11266 6.19757 6.24100 6.40623 6.57344 6.78644 7.00422 7.13251 7.17926 7.21949 7.95515 8.01634 8.44517 9.23408 9.96224 10.16658 11.43531 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037752 B = 0.002641 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.504077 B =10601.396421 C =10820.989338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.182 3.818 11 C -0.125 4.125 12 C 0.065 3.935 13 N -0.534 5.534 14 C 0.046 3.954 15 C 0.119 3.881 16 N -0.726 5.726 17 C 0.541 3.459 18 O -0.538 6.538 19 C -0.196 4.196 20 C -0.153 4.153 21 C -0.148 4.148 22 C 0.054 3.946 23 C -0.132 4.132 24 H 0.259 0.741 25 H 0.361 0.639 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.178 -18.575 3.001 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.391 5.391 10 C 0.073 3.927 11 C -0.164 4.164 12 C -0.063 4.063 13 N -0.259 5.259 14 C -0.083 4.083 15 C -0.004 4.004 16 N -0.378 5.378 17 C 0.327 3.673 18 O -0.414 6.414 19 C -0.217 4.217 20 C -0.191 4.191 21 C -0.186 4.186 22 C -0.074 4.074 23 C -0.173 4.173 24 H 0.069 0.931 25 H 0.194 0.806 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.847 -17.791 3.965 28.453 hybrid contribution 0.288 0.382 -0.931 1.047 sum 22.135 -17.410 3.034 28.324 Atomic orbital electron populations 1.69707 1.05113 1.25787 1.57711 1.24680 0.95247 0.97246 1.02130 0.86535 0.79281 0.84935 0.77716 1.21158 1.21812 1.20227 1.19075 0.80652 0.94632 1.42786 0.89321 1.42786 1.03959 1.02055 1.90254 1.20213 0.90235 0.89113 0.93183 1.21904 0.96691 0.96483 1.01298 1.22026 0.99830 0.97017 0.87438 1.61844 1.13660 1.31918 1.18501 1.22170 0.98089 0.92585 0.95416 1.21381 0.94716 0.87535 0.96777 1.45855 1.52149 1.31308 1.08467 1.19653 0.80108 0.84459 0.83091 1.90728 1.56796 1.57652 1.36246 1.22200 1.03593 0.95567 1.00349 1.22962 0.99849 0.93569 1.02701 1.22971 0.99916 1.02155 0.93517 1.22243 0.88001 0.98278 0.98868 1.22278 0.98954 0.95381 1.00684 0.93112 0.80624 0.93159 0.91394 0.91345 0.91138 0.94837 0.90399 0.94424 0.91095 0.90388 0.76630 0.85859 0.88172 0.87734 0.87882 0.87321 0.95032 0.91117 0.91748 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.59 13.97 55.49 0.78 -28.82 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.38 27.73 -169.99 -4.71 17.66 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.24 -6.83 10.42 -15.06 -0.16 -6.99 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 9 N -0.75 -17.80 4.93 -53.30 -0.26 -18.07 16 10 C 0.18 3.49 2.84 -67.81 -0.19 3.29 16 11 C -0.13 -1.94 5.57 -26.65 -0.15 -2.09 16 12 C 0.07 0.81 5.46 -3.83 -0.02 0.79 16 13 N -0.53 -6.72 4.66 -234.67 -1.09 -7.82 16 14 C 0.05 0.44 5.07 -3.83 -0.02 0.42 16 15 C 0.12 1.25 5.60 -4.04 -0.02 1.22 16 16 N -0.73 -6.17 5.56 -60.30 -0.33 -6.50 16 17 C 0.54 5.67 7.61 -10.98 -0.08 5.59 16 18 O -0.54 -8.05 16.26 5.55 0.09 -7.96 16 19 C -0.20 -1.37 6.19 -91.78 -0.57 -1.93 16 20 C -0.15 -0.92 10.24 -26.70 -0.27 -1.20 16 21 C -0.15 -1.01 10.05 -26.70 -0.27 -1.27 16 22 C 0.05 0.76 5.29 -3.83 -0.02 0.74 16 23 C -0.13 -2.34 5.68 -26.65 -0.15 -2.49 16 24 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 25 H 0.36 8.49 5.66 -40.82 -0.23 8.26 16 26 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.04 8.14 -51.94 -0.42 0.62 16 29 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.63 7.99 -51.93 -0.41 0.22 16 32 H 0.04 0.34 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 2.14 8.47 -40.82 -0.35 1.79 16 36 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.94 7.67 -51.93 -0.40 0.54 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.95 6.21 -51.93 -0.32 0.62 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -33.91 351.93 -9.80 -43.71 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.55 Total: 6.43 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.02 Total: -3.94 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.92 Total: -61.21 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.91 -9.80 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754846941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.112 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds