Wall clock time and date at job start Tue Mar 31 2020 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00129 * 2 1 4 4 H 1.48511 * 109.47067 * 269.99537 * 3 2 1 5 5 H 1.48496 * 109.47484 * 29.99141 * 3 2 1 6 6 H 1.48501 * 109.47371 * 149.99657 * 3 2 1 7 7 C 1.38814 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99577 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99979 * 180.02562 * 9 7 2 11 11 C 1.53121 * 109.51922 * 155.00278 * 10 9 7 12 12 C 1.53038 * 109.27328 * 177.56141 * 11 10 9 13 13 N 1.46853 * 109.52551 * 300.81897 * 12 11 10 14 14 C 1.46896 * 111.00259 * 185.83854 * 13 12 11 15 15 C 1.52996 * 109.47256 * 170.00129 * 14 13 12 16 16 N 1.46498 * 109.47059 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 14 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 C 1.52994 * 117.49943 * 248.75083 * 19 17 16 21 21 C 1.52991 * 117.50225 * 180.09120 * 19 17 16 22 22 C 1.46847 * 111.19320 * 61.74721 * 13 12 11 23 23 C 1.53037 * 109.52174 * 298.25536 * 22 13 12 24 24 H 0.97002 * 119.99870 * 0.02562 * 1 2 3 25 25 H 0.96994 * 119.99921 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.52271 * 34.88173 * 10 9 7 27 27 H 1.08997 * 109.50043 * 57.62705 * 11 10 9 28 28 H 1.08988 * 109.50263 * 297.50060 * 11 10 9 29 29 H 1.08996 * 109.45989 * 180.80659 * 12 11 10 30 30 H 1.08998 * 109.45455 * 60.83050 * 12 11 10 31 31 H 1.09004 * 109.46774 * 50.00328 * 14 13 12 32 32 H 1.09000 * 109.47249 * 290.00954 * 14 13 12 33 33 H 1.09004 * 109.47066 * 60.00378 * 15 14 13 34 34 H 1.08994 * 109.46974 * 300.00526 * 15 14 13 35 35 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 36 36 H 1.09000 * 115.54637 * 34.42075 * 19 17 16 37 37 H 1.09005 * 117.50098 * 359.97438 * 20 19 17 38 38 H 1.09004 * 117.49838 * 145.01994 * 20 19 17 39 39 H 1.08998 * 117.50043 * 214.98404 * 21 19 17 40 40 H 1.09006 * 117.50115 * 359.97334 * 21 19 17 41 41 H 1.08997 * 109.46766 * 58.27343 * 22 13 12 42 42 H 1.09002 * 109.46309 * 178.24278 * 22 13 12 43 43 H 1.08995 * 109.50847 * 299.23950 * 23 22 13 44 44 H 1.09007 * 109.50451 * 179.12326 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.5005 -2.2602 -0.6104 12 6 6.2827 -3.5743 -0.5522 13 7 6.4037 -4.0119 0.8444 14 6 7.2663 -5.1961 0.9522 15 6 7.5706 -5.4729 2.4259 16 7 8.4314 -6.6535 2.5333 17 6 8.8357 -7.0847 3.7445 18 8 8.4827 -6.4984 4.7459 19 6 9.7262 -8.2954 3.8548 20 6 9.1259 -9.5601 4.4720 21 6 10.1490 -8.7361 5.2575 22 6 5.0845 -4.2662 1.4372 23 6 4.2664 -2.9728 1.4383 24 1 -0.4850 0.8401 -0.0004 25 1 3.8646 -0.3622 -0.0004 26 1 3.5642 -3.2079 -0.5871 27 1 6.0333 -1.4943 -0.0469 28 1 5.3974 -1.9438 -1.6483 29 1 7.2769 -3.4240 -0.9730 30 1 5.7562 -4.3360 -1.1271 31 1 8.1983 -5.0166 0.4162 32 1 6.7576 -6.0569 0.5183 33 1 6.6386 -5.6523 2.9619 34 1 8.0793 -4.6121 2.8597 35 1 8.7139 -7.1223 1.7325 36 1 10.4482 -8.4229 3.0482 37 1 8.0868 -9.5163 4.7987 38 1 9.4532 -10.5197 4.0717 39 1 11.1490 -9.1537 5.3739 40 1 9.7834 -8.1500 6.1008 41 1 4.5637 -5.0247 0.8529 42 1 5.2082 -4.6185 2.4613 43 1 4.7797 -2.2180 2.0340 44 1 3.2816 -3.1654 1.8642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754846941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:17 Heat of formation + Delta-G solvation = -23.228628 kcal Electronic energy + Delta-G solvation = -21724.029613 eV Core-core repulsion = 18483.073797 eV Total energy + Delta-G solvation = -3240.955816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03203 -40.12917 -37.50282 -36.88257 -35.77051 -34.06936 -32.11087 -31.75980 -29.45613 -26.30557 -24.99903 -24.34932 -23.32675 -23.17483 -22.31975 -21.14891 -20.90382 -19.52093 -18.48112 -17.45653 -16.85619 -16.70473 -16.42137 -16.07609 -15.70371 -15.47910 -15.44348 -14.98076 -14.85613 -14.57143 -14.34166 -14.20089 -13.54834 -13.39964 -13.08726 -12.95549 -12.82274 -12.46281 -12.43167 -12.29664 -12.09920 -11.87620 -11.84480 -11.64064 -11.54066 -11.43868 -11.21909 -10.97072 -10.90940 -10.13794 -9.33483 -9.27233 -8.02936 -5.35873 1.37523 1.40746 1.45567 1.48243 2.01730 2.48210 2.91912 3.03159 3.27842 3.55329 3.72775 3.80983 3.89026 3.97638 3.98652 4.05092 4.17017 4.25061 4.27741 4.34990 4.49042 4.53425 4.66794 4.73494 4.74946 4.79652 4.89301 4.91532 4.95012 5.01208 5.04146 5.09747 5.17905 5.22741 5.38445 5.39066 5.53221 5.75867 6.08554 6.14713 6.21838 6.52703 7.07705 7.22782 7.84752 8.04141 9.18746 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037752 B = 0.002641 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.504077 B =10601.396421 C =10820.989338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.254 1.254 7 C -0.227 4.227 8 H 0.054 0.946 9 N -0.752 5.752 10 C 0.174 3.826 11 C -0.117 4.117 12 C 0.071 3.929 13 N -0.545 5.545 14 C 0.055 3.945 15 C 0.125 3.875 16 N -0.710 5.710 17 C 0.532 3.468 18 O -0.593 6.593 19 C -0.195 4.195 20 C -0.143 4.143 21 C -0.158 4.158 22 C 0.066 3.934 23 C -0.125 4.125 24 H 0.257 0.743 25 H 0.365 0.635 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.419 0.581 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.825 -19.772 1.654 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.359 4.359 8 H 0.072 0.928 9 N -0.395 5.395 10 C 0.066 3.934 11 C -0.156 4.156 12 C -0.057 4.057 13 N -0.270 5.270 14 C -0.073 4.073 15 C 0.000 4.000 16 N -0.362 5.362 17 C 0.320 3.680 18 O -0.474 6.474 19 C -0.216 4.216 20 C -0.181 4.181 21 C -0.195 4.195 22 C -0.063 4.063 23 C -0.166 4.166 24 H 0.066 0.934 25 H 0.198 0.802 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.256 0.744 36 H 0.176 0.824 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 25.565 -19.047 2.575 31.984 hybrid contribution -0.869 0.642 -0.489 1.186 sum 24.696 -18.405 2.086 30.870 Atomic orbital electron populations 1.69893 1.07134 1.26618 1.59977 1.25529 0.96160 1.01340 1.02878 0.85368 0.78495 0.79499 0.78154 1.20157 1.22446 1.17887 1.19020 0.82727 0.93264 1.40844 0.92826 1.42827 1.02403 1.04042 1.90242 1.20478 0.91972 0.86875 0.94070 1.21812 0.94186 0.98527 1.01043 1.22015 1.01034 0.95256 0.87421 1.61767 1.12683 1.33836 1.18719 1.22164 0.98598 0.91830 0.94697 1.21182 0.93859 0.87581 0.97328 1.45704 1.51099 1.30544 1.08898 1.20375 0.79914 0.85033 0.82686 1.90706 1.58961 1.59592 1.38116 1.22292 1.03669 0.94170 1.01464 1.23050 0.98850 0.94363 1.01813 1.23026 1.01422 1.02392 0.92654 1.22026 0.88671 0.95924 0.99673 1.22089 0.98132 0.97187 0.99163 0.93412 0.80195 0.94510 0.91539 0.90808 0.87963 0.94155 0.87741 0.92877 0.93183 0.92343 0.74355 0.82435 0.89860 0.84752 0.85351 0.90121 0.94623 0.90631 0.92696 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.96 46.55 27.73 68.60 1.90 48.46 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.25 -11.28 6.52 99.48 0.65 -10.64 16 7 C -0.23 -13.23 10.42 84.03 0.88 -12.35 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.40 16 9 N -0.75 -35.81 4.93 -322.55 -1.59 -37.40 16 10 C 0.17 6.62 2.84 45.07 0.13 6.74 16 11 C -0.12 -3.36 5.57 30.65 0.17 -3.19 16 12 C 0.07 1.51 5.46 86.32 0.47 1.98 16 13 N -0.54 -12.25 4.66 -896.36 -4.17 -16.43 16 14 C 0.06 0.86 5.07 86.30 0.44 1.29 16 15 C 0.13 2.42 5.60 86.38 0.48 2.90 16 16 N -0.71 -10.53 5.56 -463.07 -2.57 -13.11 16 17 C 0.53 10.63 7.61 87.66 0.67 11.30 16 18 O -0.59 -18.25 16.26 -3.04 -0.05 -18.30 16 19 C -0.20 -2.26 6.19 -11.54 -0.07 -2.33 16 20 C -0.14 -1.42 10.24 30.61 0.31 -1.11 16 21 C -0.16 -1.92 10.05 30.61 0.31 -1.61 16 22 C 0.07 1.78 5.29 86.33 0.46 2.24 16 23 C -0.13 -4.48 5.68 30.65 0.17 -4.31 16 24 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 25 H 0.36 16.70 5.66 -92.71 -0.53 16.18 16 26 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 1.63 8.02 -2.39 -0.02 1.62 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.10 1.16 7.99 -2.38 -0.02 1.14 16 32 H 0.05 0.72 8.12 -2.39 -0.02 0.70 16 33 H 0.05 1.19 6.43 -2.38 -0.02 1.17 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.42 2.96 8.47 -92.71 -0.79 2.17 16 36 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.45 7.67 -2.38 -0.02 1.43 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 2.00 6.21 -2.39 -0.01 1.98 16 43 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -77.68 351.93 -1.68 -79.36 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.38 Total: 23.55 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.88 Total: -2.07 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -8.03 Total: -131.00 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.90 Total: 48.46 kcal Total: -77.68 -1.68 -79.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754846941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.129 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds