Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47102 * 294.99833 * 5 4 3 7 7 C 1.52996 * 109.46951 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47365 * 59.99890 * 7 6 5 9 9 C 1.50706 * 109.47318 * 179.97438 * 8 7 6 10 10 O 1.21273 * 119.99712 * 119.99838 * 9 8 7 11 11 N 1.34781 * 119.99805 * 300.00147 * 9 8 7 12 12 C 1.46496 * 119.99676 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47367 * 325.00111 * 12 11 9 14 14 C 1.53010 * 109.46999 * 84.99939 * 12 11 9 15 15 C 1.50698 * 109.47272 * 204.99769 * 12 11 9 16 16 H 1.08004 * 119.99516 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00128 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99753 * 180.02562 * 17 15 12 19 19 Si 1.86793 * 119.99999 * 0.02562 * 17 15 12 20 20 H 1.48507 * 109.47116 * 90.00202 * 19 17 15 21 21 H 1.48503 * 109.47016 * 209.99798 * 19 17 15 22 22 H 1.48500 * 109.47311 * 329.99715 * 19 17 15 23 23 C 1.52996 * 109.47176 * 299.99973 * 8 7 6 24 24 C 1.52997 * 109.46646 * 174.99857 * 5 4 3 25 25 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 26 26 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 28 28 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 29 29 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 30 30 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 31 31 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 34 34 H 1.09000 * 109.47314 * 54.99967 * 5 4 3 35 35 H 1.09006 * 109.46822 * 299.99923 * 6 5 4 36 36 H 1.08997 * 109.47474 * 60.00037 * 6 5 4 37 37 H 1.08993 * 109.47243 * 299.99585 * 7 6 5 38 38 H 1.09007 * 109.46984 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.46998 * 59.99958 * 8 7 6 40 40 H 0.97002 * 120.00021 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.46921 * 59.99899 * 14 12 11 42 42 H 1.08992 * 109.47110 * 179.97438 * 14 12 11 43 43 H 1.09000 * 109.46785 * 300.00140 * 14 12 11 44 44 H 0.97000 * 119.99963 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.46822 * 300.00209 * 23 8 7 46 46 H 1.08997 * 109.47474 * 180.02562 * 23 8 7 47 47 H 1.09004 * 109.47394 * 299.99282 * 24 5 4 48 48 H 1.08990 * 109.47621 * 60.00181 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.6748 3.5697 -1.3068 7 6 4.1853 5.0120 -1.3063 8 6 5.7102 5.0132 -1.1815 9 6 6.2132 6.4339 -1.1817 10 8 6.8345 6.8573 -0.2302 11 7 5.9724 7.2338 -2.2394 12 6 6.4608 8.6150 -2.2394 13 1 6.4141 9.0169 -1.2273 14 6 7.9088 8.6439 -2.7332 15 6 5.6020 9.4516 -3.1523 16 1 4.7747 8.9997 -3.6795 17 6 5.8722 10.7938 -3.3145 18 7 5.1223 11.5240 -4.1109 19 14 7.3035 11.5751 -2.4033 20 1 8.5301 11.4819 -3.2353 21 1 6.9971 13.0026 -2.1315 22 1 7.5210 10.8623 -1.1189 23 6 6.1155 4.3285 0.1253 24 6 5.6049 2.8866 0.1251 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 3.6458 3.4235 0.8423 35 1 4.1091 3.0311 -2.1491 36 1 2.5885 3.5685 -1.3959 37 1 3.7514 5.5508 -0.4641 38 1 3.8970 5.4998 -2.2376 39 1 6.1442 4.4745 -2.0238 40 1 5.4758 6.8950 -3.0007 41 1 7.9555 8.2420 -3.7453 42 1 8.2720 9.6715 -2.7336 43 1 8.5300 8.0387 -2.0729 44 1 5.3127 12.4682 -4.2254 45 1 5.6815 4.8673 0.9676 46 1 7.2018 4.3297 0.2145 47 1 5.8936 2.3988 1.0562 48 1 6.0392 2.3481 -0.7171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = -90.568798 kcal Electronic energy + Delta-G solvation = -22540.089621 eV Core-core repulsion = 19399.754060 eV Total energy + Delta-G solvation = -3140.335562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.85107 -38.13670 -35.68180 -34.90934 -32.63797 -32.16342 -30.81571 -29.79842 -28.29741 -25.20213 -24.61370 -22.73620 -22.18642 -21.18589 -20.48000 -19.79334 -19.35192 -17.28894 -16.03259 -15.87580 -15.46570 -15.23177 -14.48850 -14.36402 -14.25755 -13.99989 -13.65752 -13.35155 -13.18413 -12.90595 -12.88499 -12.38390 -12.22081 -12.16191 -12.13009 -11.73662 -11.57894 -11.35177 -11.25438 -11.22338 -11.03997 -10.91645 -10.79384 -10.70651 -10.48361 -10.20998 -10.15727 -9.91552 -9.66768 -9.20625 -8.94850 -8.73624 -8.09206 -6.19660 -4.21743 3.24103 3.31588 3.36291 3.41491 4.01805 4.33120 4.43257 4.58428 4.71315 4.75581 4.87664 4.93062 5.08085 5.15121 5.19771 5.28791 5.33498 5.43052 5.44474 5.53154 5.54518 5.56495 5.60482 5.65520 5.70579 5.78960 5.85124 5.89690 5.97627 6.05327 6.09500 6.16011 6.19354 6.26309 6.28622 6.33724 6.39826 6.42524 6.52161 6.59166 6.88820 7.22959 7.34518 7.55963 8.19191 8.58194 8.78154 9.01615 9.41914 10.92595 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030001 B = 0.003108 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.064176 B = 9007.254988 C = 9671.859243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.090 4.090 6 C -0.111 4.111 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.506 3.494 10 O -0.559 6.559 11 N -0.702 5.702 12 C 0.235 3.765 13 H 0.047 0.953 14 C -0.160 4.160 15 C -0.533 4.533 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.886 3.114 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.262 1.262 23 C -0.097 4.097 24 C -0.113 4.113 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.394 0.606 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.267 0.733 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 -22.012 6.323 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.151 4.151 5 C -0.108 4.108 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.127 4.127 9 C 0.291 3.709 10 O -0.438 6.438 11 N -0.350 5.350 12 C 0.132 3.868 13 H 0.065 0.935 14 C -0.219 4.219 15 C -0.571 4.571 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.187 1.187 23 C -0.135 4.135 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.227 0.773 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.196 -21.490 6.911 22.961 hybrid contribution 0.532 0.471 -0.120 0.721 sum -3.664 -21.019 6.791 22.391 Atomic orbital electron populations 1.21785 0.96065 1.01391 1.01870 1.21543 0.95726 0.97242 1.01766 1.21690 0.95633 0.96413 1.02297 1.21641 0.95216 0.96498 1.01789 1.21216 0.95658 0.95528 0.98393 1.21622 1.00660 0.95263 0.97347 1.21527 0.93347 0.97122 1.02908 1.21340 0.97126 0.93949 1.00329 1.20561 0.79950 0.87492 0.82917 1.90630 1.41927 1.76097 1.35131 1.46207 1.55701 1.13908 1.19160 1.19078 0.90834 0.78632 0.98281 0.93517 1.22445 0.98966 0.99897 1.00560 1.21052 1.14963 0.93815 1.27273 0.90245 1.24839 0.96351 0.96862 0.94571 1.69874 1.38928 1.07461 1.36792 0.86868 0.82383 0.77916 0.81256 1.20340 1.22193 1.18686 1.21295 1.01219 0.94465 0.96524 1.21596 0.95020 0.96791 1.01605 0.92713 0.93003 0.92807 0.92191 0.92291 0.92104 0.91624 0.92082 0.92222 0.91157 0.91926 0.91592 0.91414 0.91142 0.89200 0.77251 0.92884 0.93539 0.94605 0.92326 0.91343 0.91477 0.92027 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.15 0.37 -0.63 16 2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.01 16 3 C -0.12 -0.92 4.97 -26.73 -0.13 -1.05 16 4 C -0.11 -0.89 4.68 -26.73 -0.13 -1.01 16 5 C -0.09 -0.82 2.19 -90.62 -0.20 -1.02 16 6 C -0.11 -1.08 4.96 -26.74 -0.13 -1.21 16 7 C -0.11 -1.36 5.10 -26.73 -0.14 -1.49 16 8 C -0.11 -1.46 2.52 -91.77 -0.23 -1.69 16 9 C 0.51 9.63 7.12 -10.98 -0.08 9.55 16 10 O -0.56 -12.79 15.65 5.56 0.09 -12.70 16 11 N -0.70 -14.12 4.96 -54.93 -0.27 -14.39 16 12 C 0.24 5.72 2.15 -69.08 -0.15 5.57 16 13 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 14 C -0.16 -3.67 8.96 37.16 0.33 -3.33 16 15 C -0.53 -14.55 9.31 -34.44 -0.32 -14.87 16 16 H 0.08 2.27 7.98 -52.48 -0.42 1.85 16 17 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 18 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 19 Si 0.89 22.08 24.37 -169.99 -4.14 17.94 16 20 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 23 C -0.10 -1.26 4.49 -26.75 -0.12 -1.38 16 24 C -0.11 -1.11 5.20 -26.75 -0.14 -1.25 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.39 7.00 7.96 -40.82 -0.32 6.67 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 46 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -30.92 363.72 -8.51 -39.43 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -9.12 Total: 2.88 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.32 Total: -12.75 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.50 Total: -40.27 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.92 -8.51 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.142 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds