Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47102 * 294.99833 * 5 4 3 7 7 C 1.52996 * 109.46951 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47365 * 59.99890 * 7 6 5 9 9 C 1.50706 * 109.47318 * 179.97438 * 8 7 6 10 10 O 1.21273 * 119.99712 * 119.99838 * 9 8 7 11 11 N 1.34781 * 119.99805 * 300.00147 * 9 8 7 12 12 C 1.46496 * 119.99676 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47367 * 325.00111 * 12 11 9 14 14 C 1.53010 * 109.46999 * 84.99939 * 12 11 9 15 15 C 1.50698 * 109.47272 * 204.99769 * 12 11 9 16 16 H 1.08004 * 119.99516 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00128 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99753 * 180.02562 * 17 15 12 19 19 Si 1.86793 * 119.99999 * 0.02562 * 17 15 12 20 20 H 1.48507 * 109.47116 * 90.00202 * 19 17 15 21 21 H 1.48503 * 109.47016 * 209.99798 * 19 17 15 22 22 H 1.48500 * 109.47311 * 329.99715 * 19 17 15 23 23 C 1.52996 * 109.47176 * 299.99973 * 8 7 6 24 24 C 1.52997 * 109.46646 * 174.99857 * 5 4 3 25 25 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 26 26 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 28 28 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 29 29 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 30 30 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 31 31 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 34 34 H 1.09000 * 109.47314 * 54.99967 * 5 4 3 35 35 H 1.09006 * 109.46822 * 299.99923 * 6 5 4 36 36 H 1.08997 * 109.47474 * 60.00037 * 6 5 4 37 37 H 1.08993 * 109.47243 * 299.99585 * 7 6 5 38 38 H 1.09007 * 109.46984 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.46998 * 59.99958 * 8 7 6 40 40 H 0.97002 * 120.00021 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.46921 * 59.99899 * 14 12 11 42 42 H 1.08992 * 109.47110 * 179.97438 * 14 12 11 43 43 H 1.09000 * 109.46785 * 300.00140 * 14 12 11 44 44 H 0.97000 * 119.99963 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.46822 * 300.00209 * 23 8 7 46 46 H 1.08997 * 109.47474 * 180.02562 * 23 8 7 47 47 H 1.09004 * 109.47394 * 299.99282 * 24 5 4 48 48 H 1.08990 * 109.47621 * 60.00181 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 3.6748 3.5697 -1.3068 7 6 4.1853 5.0120 -1.3063 8 6 5.7102 5.0132 -1.1815 9 6 6.2132 6.4339 -1.1817 10 8 6.8345 6.8573 -0.2302 11 7 5.9724 7.2338 -2.2394 12 6 6.4608 8.6150 -2.2394 13 1 6.4141 9.0169 -1.2273 14 6 7.9088 8.6439 -2.7332 15 6 5.6020 9.4516 -3.1523 16 1 4.7747 8.9997 -3.6795 17 6 5.8722 10.7938 -3.3145 18 7 5.1223 11.5240 -4.1109 19 14 7.3035 11.5751 -2.4033 20 1 8.5301 11.4819 -3.2353 21 1 6.9971 13.0026 -2.1315 22 1 7.5210 10.8623 -1.1189 23 6 6.1155 4.3285 0.1253 24 6 5.6049 2.8866 0.1251 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 3.6458 3.4235 0.8423 35 1 4.1091 3.0311 -2.1491 36 1 2.5885 3.5685 -1.3959 37 1 3.7514 5.5508 -0.4641 38 1 3.8970 5.4998 -2.2376 39 1 6.1442 4.4745 -2.0238 40 1 5.4758 6.8950 -3.0007 41 1 7.9555 8.2420 -3.7453 42 1 8.2720 9.6715 -2.7336 43 1 8.5300 8.0387 -2.0729 44 1 5.3127 12.4682 -4.2254 45 1 5.6815 4.8673 0.9676 46 1 7.2018 4.3297 0.2145 47 1 5.8936 2.3988 1.0562 48 1 6.0392 2.3481 -0.7171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = -108.460014 kcal Electronic energy + Delta-G solvation = -22540.865443 eV Core-core repulsion = 19399.754060 eV Total energy + Delta-G solvation = -3141.111383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17829 -39.26638 -36.91119 -36.26091 -34.43513 -33.32045 -31.90485 -31.31180 -29.14742 -27.24413 -25.55087 -23.62301 -23.44323 -22.18406 -21.51824 -20.97685 -20.59662 -19.07856 -17.80857 -17.28431 -16.64684 -16.33549 -15.99052 -15.39864 -15.11911 -15.02818 -14.93482 -14.84478 -14.45615 -14.15281 -13.99752 -13.81032 -13.66004 -13.29971 -13.14144 -12.98498 -12.86844 -12.74804 -12.39136 -12.16090 -12.08735 -11.91702 -11.86922 -11.75022 -11.62354 -11.33954 -11.29285 -11.28351 -11.03310 -10.88841 -10.76089 -10.47851 -9.85921 -8.39684 -6.45229 1.25160 1.33543 1.43174 1.78123 2.24545 2.49492 2.96408 3.65415 3.75553 3.80178 3.98750 4.12016 4.22315 4.27989 4.36844 4.42389 4.44629 4.48972 4.55705 4.57891 4.62784 4.66162 4.69168 4.73007 4.88824 4.95503 4.97508 4.99128 5.02202 5.08887 5.18749 5.21445 5.26353 5.29508 5.30322 5.32302 5.37477 5.39330 5.42283 5.46391 5.53525 5.62397 5.65755 5.69763 6.13214 6.56300 6.89258 7.18309 7.47406 8.75571 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030001 B = 0.003108 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.064176 B = 9007.254988 C = 9671.859243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.107 4.107 5 C -0.087 4.087 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.095 4.095 9 C 0.502 3.498 10 O -0.599 6.599 11 N -0.701 5.701 12 C 0.240 3.760 13 H 0.018 0.982 14 C -0.154 4.154 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.029 3.971 18 N -0.933 5.933 19 Si 0.939 3.061 20 H -0.259 1.259 21 H -0.291 1.291 22 H -0.266 1.266 23 C -0.095 4.095 24 C -0.104 4.104 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.406 0.594 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.270 0.730 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -24.213 6.187 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.145 4.145 5 C -0.106 4.106 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.116 4.116 9 C 0.290 3.710 10 O -0.481 6.481 11 N -0.349 5.349 12 C 0.135 3.865 13 H 0.036 0.964 14 C -0.212 4.212 15 C -0.570 4.570 16 H 0.076 0.924 17 C -0.171 4.171 18 N -0.572 5.572 19 Si 0.766 3.234 20 H -0.184 1.184 21 H -0.219 1.219 22 H -0.191 1.191 23 C -0.133 4.133 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.242 0.758 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.715 -23.723 6.760 24.946 hybrid contribution 0.308 1.139 -0.059 1.181 sum -3.407 -22.585 6.701 23.803 Atomic orbital electron populations 1.21798 0.96010 1.01749 1.01699 1.21531 0.95796 0.96771 1.02054 1.21674 0.95536 0.96819 1.01930 1.21573 0.95211 0.95253 1.02415 1.21187 0.95166 0.96485 0.97751 1.21595 1.01215 0.93258 0.98140 1.21526 0.91977 0.99066 1.02118 1.21369 0.98134 0.90200 1.01864 1.21511 0.78779 0.89214 0.81524 1.90608 1.43711 1.77323 1.36449 1.46076 1.56034 1.12570 1.20269 1.18746 0.91589 0.80397 0.95790 0.96430 1.22335 0.97622 0.99812 1.01459 1.21252 1.14572 0.94259 1.26894 0.92440 1.25550 0.98675 0.97536 0.95326 1.69974 1.40728 1.07987 1.38486 0.86009 0.80263 0.76981 0.80134 1.18423 1.21874 1.19064 1.21280 1.00498 0.96347 0.95178 1.21551 0.95351 0.94430 1.02838 0.92863 0.92415 0.93027 0.91812 0.92070 0.92713 0.91797 0.91261 0.91767 0.92252 0.90429 0.90748 0.93202 0.91182 0.86583 0.75818 0.91520 0.94144 0.93711 0.92029 0.93443 0.92556 0.91037 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.12 -1.43 5.93 30.59 0.18 -1.25 16 3 C -0.12 -1.57 4.97 30.60 0.15 -1.42 16 4 C -0.11 -1.36 4.68 30.60 0.14 -1.22 16 5 C -0.09 -1.41 2.19 -10.79 -0.02 -1.43 16 6 C -0.10 -1.76 4.96 30.59 0.15 -1.60 16 7 C -0.11 -2.52 5.10 30.59 0.16 -2.36 16 8 C -0.09 -2.47 2.52 -11.54 -0.03 -2.50 16 9 C 0.50 18.94 7.12 87.66 0.62 19.57 16 10 O -0.60 -27.69 15.65 -3.01 -0.05 -27.74 16 11 N -0.70 -27.95 4.96 -446.09 -2.21 -30.16 16 12 C 0.24 11.65 2.15 44.25 0.10 11.74 16 13 H 0.02 0.97 6.64 -2.39 -0.02 0.96 16 14 C -0.15 -6.85 8.96 71.99 0.65 -6.20 16 15 C -0.53 -29.32 9.31 25.60 0.24 -29.08 16 16 H 0.06 3.35 7.98 -2.91 -0.02 3.33 16 17 C 0.03 1.65 5.45 84.65 0.46 2.11 16 18 N -0.93 -56.23 13.96 21.45 0.30 -55.93 16 19 Si 0.94 45.43 24.37 68.60 1.67 47.10 16 20 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.27 -12.93 6.53 99.48 0.65 -12.28 16 23 C -0.09 -2.36 4.49 30.58 0.14 -2.22 16 24 C -0.10 -1.79 5.20 30.58 0.16 -1.63 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.16 6.57 -2.39 -0.02 1.15 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.62 7.56 -2.38 -0.02 1.60 16 39 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.41 14.14 7.96 -92.71 -0.74 13.41 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 46 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -66.80 363.72 3.60 -63.20 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.09 Total: 22.09 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.81 Total: -18.56 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.91 Total: -86.10 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -66.80 3.60 -63.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.259 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds