Wall clock time and date at job start Tue Mar 31 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47099 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47099 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46984 * 175.00162 * 5 4 3 7 7 C 1.53006 * 109.46823 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47122 * 299.99827 * 7 6 5 9 9 C 1.50700 * 109.46938 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00017 * 359.72776 * 9 8 7 11 11 N 1.34775 * 119.99807 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99483 * 179.72691 * 11 9 8 13 13 H 1.08994 * 109.47241 * 35.00088 * 12 11 9 14 14 C 1.52998 * 109.47257 * 274.99533 * 12 11 9 15 15 C 1.50706 * 109.46707 * 154.99916 * 12 11 9 16 16 H 1.08002 * 119.99935 * 34.99863 * 15 12 11 17 17 C 1.37873 * 119.99987 * 214.99938 * 15 12 11 18 18 N 1.31511 * 120.00159 * 184.91857 * 17 15 12 19 19 Si 1.86800 * 120.00006 * 4.91511 * 17 15 12 20 20 H 1.48503 * 109.47081 * 84.83158 * 19 17 15 21 21 H 1.48497 * 109.47435 * 204.83471 * 19 17 15 22 22 H 1.48508 * 109.47298 * 324.83444 * 19 17 15 23 23 C 1.52999 * 109.46771 * 60.00305 * 8 7 6 24 24 C 1.53001 * 109.47210 * 299.99438 * 23 8 7 25 25 H 1.09004 * 109.47401 * 299.99703 * 1 2 3 26 26 H 1.08996 * 109.47346 * 60.00056 * 1 2 3 27 27 H 1.09000 * 109.46809 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46852 * 239.99591 * 2 1 3 29 29 H 1.09006 * 109.47264 * 120.00004 * 2 1 3 30 30 H 1.08993 * 109.47217 * 59.99822 * 3 2 1 31 31 H 1.08995 * 109.46982 * 299.99616 * 3 2 1 32 32 H 1.09006 * 109.47180 * 59.99555 * 4 3 2 33 33 H 1.08996 * 109.47346 * 299.99944 * 4 3 2 34 34 H 1.08995 * 109.47320 * 54.99656 * 5 4 3 35 35 H 1.08997 * 109.47322 * 60.00110 * 6 5 4 36 36 H 1.08995 * 109.47047 * 299.99783 * 6 5 4 37 37 H 1.09005 * 109.46642 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46835 * 60.00113 * 7 6 5 39 39 H 1.08995 * 109.46997 * 299.99964 * 8 7 6 40 40 H 0.96998 * 120.00027 * 359.72223 * 11 9 8 41 41 H 1.09005 * 109.46614 * 55.04008 * 14 12 11 42 42 H 1.09000 * 109.47418 * 175.04064 * 14 12 11 43 43 H 1.09000 * 109.47170 * 295.04432 * 14 12 11 44 44 H 0.97002 * 120.00344 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.47639 * 60.00051 * 23 8 7 46 46 H 1.09007 * 109.46907 * 180.02562 * 23 8 7 47 47 H 1.09006 * 109.46858 * 300.00666 * 24 23 8 48 48 H 1.08994 * 109.47281 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6047 2.8869 0.1263 7 6 6.1148 4.3295 0.1250 8 6 5.7106 5.0121 -1.1832 9 6 6.2124 6.4331 -1.1842 10 8 6.8280 6.8595 -0.2301 11 7 5.9719 7.2320 -2.2427 12 6 6.4545 8.6152 -2.2410 13 1 7.4129 8.6650 -1.7243 14 6 5.4409 9.5083 -1.5228 15 6 6.6244 9.0896 -3.6613 16 1 5.9415 8.7544 -4.4279 17 6 7.6515 9.9516 -3.9820 18 7 7.7428 10.4418 -5.1989 19 14 8.9134 10.4233 -2.6880 20 1 9.9805 9.3917 -2.6379 21 1 9.5113 11.7374 -3.0354 22 1 8.2517 10.5157 -1.3617 23 6 4.1858 5.0102 -1.3095 24 6 3.6757 3.5677 -1.3083 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 3.6450 3.4246 0.8412 35 1 6.0397 2.3474 -0.7150 36 1 5.8927 2.4002 1.0581 37 1 7.2011 4.3308 0.2155 38 1 5.6798 4.8693 0.9661 39 1 6.1455 4.4722 -2.0242 40 1 5.4792 6.8911 -3.0056 41 1 5.2518 9.1132 -0.5246 42 1 5.8394 10.5197 -1.4438 43 1 4.5092 9.5280 -2.0882 44 1 8.4657 11.0480 -5.4247 45 1 3.7508 5.5501 -0.4685 46 1 3.8978 5.4962 -2.2417 47 1 4.1108 3.0278 -2.1494 48 1 2.5896 3.5663 -1.3986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:25 Heat of formation + Delta-G solvation = -99.154071 kcal Electronic energy + Delta-G solvation = -22551.326996 eV Core-core repulsion = 19410.619148 eV Total energy + Delta-G solvation = -3140.707847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.82433 -38.10842 -35.67094 -34.79936 -32.61007 -32.16586 -30.80617 -29.71693 -28.25949 -25.30772 -24.60347 -22.74190 -22.09878 -21.14254 -20.37953 -19.79193 -19.32255 -17.40060 -16.09076 -15.89636 -15.49001 -14.98633 -14.49817 -14.35503 -14.28852 -13.92330 -13.59717 -13.30787 -13.22257 -12.87738 -12.52341 -12.49878 -12.37692 -12.15310 -12.00720 -11.62457 -11.44396 -11.32590 -11.27093 -11.08084 -11.04138 -10.92345 -10.79289 -10.71547 -10.54523 -10.48346 -10.19993 -9.91820 -9.85944 -9.18075 -8.94804 -8.68000 -8.02432 -6.22423 -4.25757 3.26834 3.34646 3.36804 3.42589 4.05858 4.33718 4.42644 4.57517 4.70578 4.74488 4.87437 4.91734 5.07810 5.16163 5.19048 5.28750 5.35405 5.42967 5.44202 5.52841 5.54489 5.57311 5.60732 5.65194 5.70356 5.77914 5.84881 5.89587 5.96514 6.04991 6.09352 6.15658 6.17030 6.25819 6.28445 6.37265 6.41847 6.52708 6.55329 6.70747 6.97336 7.22107 7.41625 7.60504 8.17296 8.62748 8.78658 9.06573 9.40291 10.89405 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.003063 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.818489 B = 9139.778077 C = 9503.188232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.089 4.089 6 C -0.113 4.113 7 C -0.097 4.097 8 C -0.108 4.108 9 C 0.503 3.497 10 O -0.562 6.562 11 N -0.704 5.704 12 C 0.230 3.770 13 H 0.049 0.951 14 C -0.146 4.146 15 C -0.529 4.529 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.261 1.261 23 C -0.109 4.109 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.392 0.608 41 H 0.028 0.972 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.267 0.733 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 -19.256 9.181 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.107 4.107 6 C -0.151 4.151 7 C -0.135 4.135 8 C -0.129 4.129 9 C 0.289 3.711 10 O -0.442 6.442 11 N -0.352 5.352 12 C 0.127 3.873 13 H 0.066 0.934 14 C -0.205 4.205 15 C -0.567 4.567 16 H 0.096 0.904 17 C -0.124 4.124 18 N -0.527 5.527 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.147 4.147 24 C -0.149 4.149 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.226 0.774 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.452 -18.783 9.712 23.587 hybrid contribution 0.513 0.225 0.079 0.566 sum -9.938 -18.558 9.791 23.217 Atomic orbital electron populations 1.21784 0.96077 1.01403 1.01829 1.21545 0.95708 0.97246 1.01805 1.21684 0.95659 0.96414 1.02229 1.21646 0.95183 0.96524 1.01839 1.21209 0.95716 0.95512 0.98295 1.21611 0.94960 0.96857 1.01638 1.21299 1.01306 0.94405 0.96472 1.21355 0.96954 0.94247 1.00365 1.20593 0.79951 0.87434 0.83160 1.90624 1.42214 1.76297 1.35034 1.46632 1.56030 1.14061 1.18501 1.19105 0.93778 0.77391 0.97000 0.93350 1.22207 1.00299 1.00031 0.97992 1.21023 1.14736 1.28626 0.92348 0.90383 1.24945 0.97097 0.95092 0.95274 1.69883 1.32364 1.31341 1.19065 0.86886 0.82152 0.78077 0.82724 1.19893 1.21213 1.18510 1.21510 0.93512 0.97122 1.02584 1.21626 1.00559 0.95310 0.97434 0.92828 0.92732 0.92991 0.92162 0.92275 0.92149 0.91652 0.92049 0.92202 0.91223 0.92049 0.92040 0.91435 0.91433 0.89102 0.77447 0.95290 0.93030 0.93479 0.92274 0.91592 0.91301 0.91847 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.90 4.97 -26.73 -0.13 -1.03 16 4 C -0.11 -0.89 4.68 -26.73 -0.13 -1.01 16 5 C -0.09 -0.81 2.19 -90.62 -0.20 -1.01 16 6 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 7 C -0.10 -1.28 4.49 -26.73 -0.12 -1.40 16 8 C -0.11 -1.52 2.53 -91.77 -0.23 -1.75 16 9 C 0.50 9.76 7.12 -10.99 -0.08 9.68 16 10 O -0.56 -13.06 15.64 5.56 0.09 -12.97 16 11 N -0.70 -14.34 4.96 -54.93 -0.27 -14.61 16 12 C 0.23 5.56 2.22 -69.08 -0.15 5.41 16 13 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 14 C -0.15 -3.27 9.47 37.16 0.35 -2.92 16 15 C -0.53 -14.36 9.05 -34.44 -0.31 -14.67 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 18 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 19 Si 0.87 21.89 26.99 -169.99 -4.59 17.30 16 20 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -6.46 6.82 56.52 0.39 -6.07 16 23 C -0.11 -1.30 5.10 -26.73 -0.14 -1.44 16 24 C -0.11 -1.06 4.96 -26.73 -0.13 -1.20 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.39 7.06 8.02 -40.82 -0.33 6.74 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.80 7.57 -51.93 -0.39 0.41 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -30.78 370.30 -8.97 -39.75 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -9.25 Total: 2.62 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.30 Total: -12.06 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.50 Total: -40.22 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.78 -8.97 -39.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.407 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds