Wall clock time and date at job start Tue Mar 31 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47099 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47099 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46984 * 175.00162 * 5 4 3 7 7 C 1.53006 * 109.46823 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47122 * 299.99827 * 7 6 5 9 9 C 1.50700 * 109.46938 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00017 * 359.72776 * 9 8 7 11 11 N 1.34775 * 119.99807 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99483 * 179.72691 * 11 9 8 13 13 H 1.08994 * 109.47241 * 35.00088 * 12 11 9 14 14 C 1.52998 * 109.47257 * 274.99533 * 12 11 9 15 15 C 1.50706 * 109.46707 * 154.99916 * 12 11 9 16 16 H 1.08002 * 119.99935 * 34.99863 * 15 12 11 17 17 C 1.37873 * 119.99987 * 214.99938 * 15 12 11 18 18 N 1.31511 * 120.00159 * 184.91857 * 17 15 12 19 19 Si 1.86800 * 120.00006 * 4.91511 * 17 15 12 20 20 H 1.48503 * 109.47081 * 84.83158 * 19 17 15 21 21 H 1.48497 * 109.47435 * 204.83471 * 19 17 15 22 22 H 1.48508 * 109.47298 * 324.83444 * 19 17 15 23 23 C 1.52999 * 109.46771 * 60.00305 * 8 7 6 24 24 C 1.53001 * 109.47210 * 299.99438 * 23 8 7 25 25 H 1.09004 * 109.47401 * 299.99703 * 1 2 3 26 26 H 1.08996 * 109.47346 * 60.00056 * 1 2 3 27 27 H 1.09000 * 109.46809 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46852 * 239.99591 * 2 1 3 29 29 H 1.09006 * 109.47264 * 120.00004 * 2 1 3 30 30 H 1.08993 * 109.47217 * 59.99822 * 3 2 1 31 31 H 1.08995 * 109.46982 * 299.99616 * 3 2 1 32 32 H 1.09006 * 109.47180 * 59.99555 * 4 3 2 33 33 H 1.08996 * 109.47346 * 299.99944 * 4 3 2 34 34 H 1.08995 * 109.47320 * 54.99656 * 5 4 3 35 35 H 1.08997 * 109.47322 * 60.00110 * 6 5 4 36 36 H 1.08995 * 109.47047 * 299.99783 * 6 5 4 37 37 H 1.09005 * 109.46642 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46835 * 60.00113 * 7 6 5 39 39 H 1.08995 * 109.46997 * 299.99964 * 8 7 6 40 40 H 0.96998 * 120.00027 * 359.72223 * 11 9 8 41 41 H 1.09005 * 109.46614 * 55.04008 * 14 12 11 42 42 H 1.09000 * 109.47418 * 175.04064 * 14 12 11 43 43 H 1.09000 * 109.47170 * 295.04432 * 14 12 11 44 44 H 0.97002 * 120.00344 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.47639 * 60.00051 * 23 8 7 46 46 H 1.09007 * 109.46907 * 180.02562 * 23 8 7 47 47 H 1.09006 * 109.46858 * 300.00666 * 24 23 8 48 48 H 1.08994 * 109.47281 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6047 2.8869 0.1263 7 6 6.1148 4.3295 0.1250 8 6 5.7106 5.0121 -1.1832 9 6 6.2124 6.4331 -1.1842 10 8 6.8280 6.8595 -0.2301 11 7 5.9719 7.2320 -2.2427 12 6 6.4545 8.6152 -2.2410 13 1 7.4129 8.6650 -1.7243 14 6 5.4409 9.5083 -1.5228 15 6 6.6244 9.0896 -3.6613 16 1 5.9415 8.7544 -4.4279 17 6 7.6515 9.9516 -3.9820 18 7 7.7428 10.4418 -5.1989 19 14 8.9134 10.4233 -2.6880 20 1 9.9805 9.3917 -2.6379 21 1 9.5113 11.7374 -3.0354 22 1 8.2517 10.5157 -1.3617 23 6 4.1858 5.0102 -1.3095 24 6 3.6757 3.5677 -1.3083 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 3.6450 3.4246 0.8412 35 1 6.0397 2.3474 -0.7150 36 1 5.8927 2.4002 1.0581 37 1 7.2011 4.3308 0.2155 38 1 5.6798 4.8693 0.9661 39 1 6.1455 4.4722 -2.0242 40 1 5.4792 6.8911 -3.0056 41 1 5.2518 9.1132 -0.5246 42 1 5.8394 10.5197 -1.4438 43 1 4.5092 9.5280 -2.0882 44 1 8.4657 11.0480 -5.4247 45 1 3.7508 5.5501 -0.4685 46 1 3.8978 5.4962 -2.2417 47 1 4.1108 3.0278 -2.1494 48 1 2.5896 3.5663 -1.3986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:24 Heat of formation + Delta-G solvation = -116.114728 kcal Electronic energy + Delta-G solvation = -22552.062465 eV Core-core repulsion = 19410.619148 eV Total energy + Delta-G solvation = -3141.443317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15205 -39.24380 -36.79710 -36.24538 -34.41480 -33.31138 -31.85077 -31.23616 -29.11669 -27.35070 -25.50062 -23.62014 -23.27426 -22.11021 -21.49269 -20.99984 -20.59829 -19.24019 -17.76723 -17.25065 -16.54856 -16.21744 -15.95893 -15.44727 -15.10900 -15.02502 -14.80812 -14.56533 -14.44859 -14.36562 -13.93196 -13.78792 -13.38802 -13.15425 -13.08912 -12.97683 -12.85865 -12.76522 -12.46096 -12.36910 -12.08096 -11.91050 -11.89660 -11.86713 -11.74607 -11.33566 -11.28396 -11.24884 -11.03303 -10.87149 -10.75908 -10.45888 -9.79147 -8.40794 -6.46572 1.26902 1.31337 1.42203 1.81128 2.25065 2.49843 3.02587 3.66567 3.76376 3.81836 3.99311 4.12408 4.23889 4.28390 4.37211 4.42715 4.48448 4.49410 4.57489 4.62962 4.66191 4.71196 4.73455 4.81465 4.89435 4.96336 4.98431 5.01820 5.06718 5.10533 5.19018 5.21407 5.26671 5.29732 5.32025 5.35254 5.38003 5.39138 5.43911 5.46609 5.53684 5.62467 5.69115 5.76748 6.11895 6.58210 6.93139 7.19743 7.49674 8.74221 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.003063 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.818489 B = 9139.778077 C = 9503.188232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.108 4.108 5 C -0.086 4.086 6 C -0.105 4.105 7 C -0.095 4.095 8 C -0.098 4.098 9 C 0.500 3.500 10 O -0.602 6.602 11 N -0.703 5.703 12 C 0.232 3.768 13 H 0.027 0.973 14 C -0.139 4.139 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.033 3.967 18 N -0.929 5.929 19 Si 0.926 3.074 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.106 4.106 24 C -0.106 4.106 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.108 0.892 40 H 0.405 0.595 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.271 0.729 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.861 -21.063 9.784 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.146 4.146 5 C -0.104 4.104 6 C -0.143 4.143 7 C -0.133 4.133 8 C -0.119 4.119 9 C 0.287 3.713 10 O -0.484 6.484 11 N -0.352 5.352 12 C 0.128 3.872 13 H 0.045 0.955 14 C -0.198 4.198 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.167 4.167 18 N -0.568 5.568 19 Si 0.751 3.249 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.240 0.760 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.329 -20.613 10.308 25.681 hybrid contribution 0.738 0.756 -0.107 1.062 sum -10.591 -19.857 10.201 24.709 Atomic orbital electron populations 1.21793 0.95912 1.01737 1.01758 1.21537 0.95875 0.96853 1.01978 1.21663 0.95343 0.96774 1.02044 1.21581 0.95375 0.95330 1.02284 1.21177 0.94884 0.96484 0.97904 1.21566 0.95634 0.94437 1.02651 1.21281 1.00276 0.96384 0.95338 1.21380 0.98580 0.90389 1.01540 1.21505 0.78764 0.89146 0.81837 1.90602 1.43917 1.77494 1.36415 1.46414 1.56248 1.12964 1.19593 1.18873 0.93666 0.79671 0.95007 0.95535 1.22094 1.00170 0.99295 0.98262 1.21191 1.13874 1.27980 0.93296 0.92406 1.25594 0.98926 0.95442 0.96782 1.69971 1.33465 1.32626 1.20699 0.86065 0.80057 0.78100 0.80648 1.20071 1.20091 1.18325 1.21511 0.91467 0.99016 1.02367 1.21606 1.01338 0.93437 0.97943 0.92923 0.92795 0.92501 0.91956 0.92138 0.92511 0.91675 0.91526 0.91847 0.91885 0.91025 0.91083 0.93078 0.93008 0.87366 0.76013 0.94624 0.93509 0.92282 0.91994 0.92576 0.90929 0.90856 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.40 5.93 30.59 0.18 -1.22 16 3 C -0.12 -1.47 4.97 30.59 0.15 -1.32 16 4 C -0.11 -1.37 4.68 30.59 0.14 -1.22 16 5 C -0.09 -1.35 2.19 -10.79 -0.02 -1.38 16 6 C -0.11 -1.88 5.20 30.60 0.16 -1.72 16 7 C -0.09 -2.41 4.49 30.60 0.14 -2.28 16 8 C -0.10 -2.62 2.53 -11.54 -0.03 -2.64 16 9 C 0.50 19.09 7.12 87.66 0.62 19.72 16 10 O -0.60 -28.06 15.64 -3.04 -0.05 -28.10 16 11 N -0.70 -28.21 4.96 -446.09 -2.21 -30.42 16 12 C 0.23 11.16 2.22 44.25 0.10 11.26 16 13 H 0.03 1.41 4.73 -2.39 -0.01 1.40 16 14 C -0.14 -6.12 9.47 71.98 0.68 -5.44 16 15 C -0.53 -28.62 9.05 25.60 0.23 -28.39 16 16 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 17 C 0.03 1.87 5.47 84.65 0.46 2.34 16 18 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 19 Si 0.93 45.28 26.99 68.60 1.85 47.13 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.26 -12.48 6.82 99.48 0.68 -11.80 16 23 C -0.11 -2.30 5.10 30.59 0.16 -2.14 16 24 C -0.11 -1.70 4.96 30.60 0.15 -1.55 16 25 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.80 6.56 -2.39 -0.02 0.79 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.45 8.10 -2.38 -0.02 1.43 16 38 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.40 14.19 8.02 -92.71 -0.74 13.44 16 41 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.53 7.57 -2.38 -0.02 1.51 16 47 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.08 1.11 6.56 -2.39 -0.02 1.09 16 Total: -1.00 -65.91 370.30 3.86 -62.05 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.13 Total: 21.55 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.84 Total: -16.95 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.91 Total: -85.69 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.85 Total: 47.13 kcal Total: -65.91 3.86 -62.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.063 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds