Wall clock time and date at job start Tue Mar 31 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53001 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47035 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47273 * 305.00329 * 5 4 3 7 7 C 1.53005 * 109.47004 * 65.00306 * 5 4 3 8 8 C 1.53002 * 109.46914 * 185.51397 * 7 5 4 9 9 C 1.50704 * 109.47214 * 185.00088 * 5 4 3 10 10 O 1.21287 * 120.00232 * 263.61058 * 9 5 4 11 11 N 1.34780 * 119.99557 * 83.60861 * 9 5 4 12 12 C 1.37100 * 119.99704 * 183.93906 * 11 9 5 13 13 H 1.07997 * 120.00327 * 134.55493 * 12 11 9 14 14 C 1.38951 * 119.99891 * 314.55369 * 12 11 9 15 15 N 1.31418 * 119.99683 * 165.21486 * 14 12 11 16 16 Si 1.86799 * 120.00285 * 345.21598 * 14 12 11 17 17 H 1.48502 * 109.47241 * 93.30666 * 16 14 12 18 18 H 1.48494 * 109.47009 * 213.30736 * 16 14 12 19 19 H 1.48497 * 109.47135 * 333.30730 * 16 14 12 20 20 C 1.46500 * 120.00191 * 3.94415 * 11 9 5 21 21 C 1.55244 * 110.57591 * 229.50346 * 20 11 9 22 22 C 1.54890 * 102.58434 * 203.33521 * 21 20 11 23 23 C 1.54264 * 104.31223 * 37.93813 * 22 21 20 24 24 C 1.53879 * 106.59862 * 336.31661 * 23 22 21 25 25 H 1.08994 * 109.46916 * 299.99313 * 1 2 3 26 26 H 1.09002 * 109.47458 * 59.99745 * 1 2 3 27 27 H 1.09003 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46681 * 240.00265 * 2 1 3 29 29 H 1.08990 * 109.47323 * 120.00660 * 2 1 3 30 30 H 1.08994 * 109.46708 * 60.00560 * 3 2 1 31 31 H 1.09002 * 109.47205 * 300.00409 * 3 2 1 32 32 H 1.09005 * 109.46681 * 60.00265 * 4 3 2 33 33 H 1.08990 * 109.47323 * 300.00660 * 4 3 2 34 34 H 1.08995 * 109.46900 * 305.50834 * 7 5 4 35 35 H 1.08998 * 109.47139 * 65.51390 * 7 5 4 36 36 H 1.09000 * 109.47175 * 183.19815 * 8 7 5 37 37 H 1.09003 * 109.46984 * 303.19711 * 8 7 5 38 38 H 1.08996 * 109.47400 * 63.19759 * 8 7 5 39 39 H 0.97004 * 119.99945 * 179.97438 * 15 14 12 40 40 H 1.08996 * 110.43713 * 352.08783 * 20 11 9 41 41 H 1.08995 * 110.89479 * 85.04900 * 21 20 11 42 42 H 1.08996 * 110.76939 * 321.56747 * 21 20 11 43 43 H 1.08998 * 110.49056 * 279.19222 * 22 21 20 44 44 H 1.08997 * 110.48404 * 156.67271 * 22 21 20 45 45 H 1.08997 * 110.03955 * 95.60848 * 23 22 21 46 46 H 1.09011 * 110.03417 * 216.99136 * 23 22 21 47 47 H 1.08999 * 110.03044 * 119.28717 * 24 23 22 48 48 H 1.08996 * 110.03478 * 240.66646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6449 3.4245 -0.8413 7 6 3.6758 3.5682 1.3080 8 6 4.0643 5.0470 1.2521 9 6 5.5819 2.8869 -0.1245 10 8 6.2726 2.9735 0.8687 11 7 6.1574 2.7922 -1.3395 12 6 7.5218 2.7126 -1.4474 13 1 7.9697 1.9855 -2.1084 14 6 8.3284 3.5674 -0.7062 15 7 9.6114 3.3136 -0.5779 16 14 7.5890 5.0774 0.1080 17 1 7.2025 4.7481 1.5035 18 1 8.5896 6.1746 0.1173 19 1 6.3873 5.5098 -0.6496 20 6 5.3250 2.7746 -2.5450 21 6 5.7302 1.5960 -3.4706 22 6 5.2349 2.0715 -4.8590 23 6 5.5267 3.5863 -4.8697 24 6 5.5840 4.0333 -3.3984 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.6767 1.9562 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8890 34 1 2.5981 3.4807 1.4457 35 1 4.1888 3.0890 2.1418 36 1 3.8282 5.5209 2.2049 37 1 5.1333 5.1347 1.0577 38 1 3.5083 5.5389 0.4541 39 1 10.1746 3.9105 -0.0607 40 1 4.2705 2.7048 -2.2784 41 1 5.2244 0.6772 -3.1740 42 1 6.8116 1.4598 -3.4721 43 1 4.1657 1.8883 -4.9660 44 1 5.7883 1.5709 -5.6534 45 1 6.4830 3.7790 -5.3560 46 1 4.7295 4.1165 -5.3909 47 1 6.5681 4.4429 -3.1706 48 1 4.8149 4.7811 -3.2051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:19 Heat of formation + Delta-G solvation = -62.976737 kcal Electronic energy + Delta-G solvation = -24418.675564 eV Core-core repulsion = 21279.536484 eV Total energy + Delta-G solvation = -3139.139080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.67356 -37.34914 -36.14332 -33.94850 -33.34876 -31.75278 -30.31120 -28.19406 -27.13670 -26.90275 -24.47774 -22.63648 -21.77403 -20.73792 -20.18283 -19.81515 -18.59983 -17.04268 -16.22966 -15.53722 -15.33041 -14.98397 -14.36475 -14.10023 -13.84265 -13.68808 -13.40119 -13.04986 -12.94064 -12.84191 -12.66599 -12.43041 -12.00315 -11.81948 -11.51066 -11.34920 -11.19865 -11.07549 -10.93202 -10.79593 -10.73030 -10.65774 -10.56385 -10.48700 -10.32033 -10.13473 -10.02561 -9.83340 -9.78942 -9.66918 -8.49274 -8.25096 -7.45080 -6.09020 -3.91567 3.35988 3.49935 3.71441 3.90906 4.46905 4.61704 4.90008 4.94383 5.05812 5.11204 5.14770 5.18458 5.22917 5.38708 5.47103 5.49914 5.52648 5.68523 5.72181 5.79467 5.80881 5.89861 5.93384 5.96376 6.00884 6.04315 6.06540 6.08055 6.12767 6.14292 6.18997 6.29101 6.32819 6.33497 6.38643 6.46017 6.48948 6.58089 6.71797 6.73756 6.75142 6.86537 7.00474 7.93719 8.11006 8.87791 9.01665 9.51792 9.92040 10.95047 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013421 B = 0.007729 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.800212 B = 3622.001703 C = 4816.917963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.105 4.105 5 C -0.107 4.107 6 H 0.079 0.921 7 C -0.104 4.104 8 C -0.162 4.162 9 C 0.458 3.542 10 O -0.542 6.542 11 N -0.460 5.460 12 C -0.338 4.338 13 H 0.094 0.906 14 C 0.086 3.914 15 N -0.876 5.876 16 Si 0.918 3.082 17 H -0.252 1.252 18 H -0.318 1.318 19 H -0.280 1.280 20 C 0.127 3.873 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.135 4.135 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.270 0.730 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 -1.976 -3.959 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.143 4.143 5 C -0.129 4.129 6 H 0.097 0.903 7 C -0.142 4.142 8 C -0.219 4.219 9 C 0.248 3.752 10 O -0.425 6.425 11 N -0.181 5.181 12 C -0.464 4.464 13 H 0.112 0.888 14 C -0.121 4.121 15 N -0.512 5.512 16 Si 0.751 3.249 17 H -0.179 1.179 18 H -0.249 1.249 19 H -0.206 1.206 20 C 0.022 3.978 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.174 4.174 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.646 -1.906 -3.402 16.125 hybrid contribution -0.223 0.855 0.234 0.914 sum -15.869 -1.051 -3.168 16.216 Atomic orbital electron populations 1.21774 0.96236 1.01241 1.01620 1.21537 0.95409 0.97272 1.02092 1.21688 0.95506 0.96433 1.02012 1.21488 0.94713 0.95211 1.02907 1.21380 0.94963 0.97316 0.99244 0.90325 1.21386 0.99817 0.95585 0.97383 1.21969 1.02967 0.96310 1.00647 1.20352 0.89042 0.81505 0.84261 1.90488 1.63763 1.51646 1.36574 1.43679 1.06349 1.65525 1.02517 1.18712 0.78088 1.19609 1.30033 0.88841 1.25390 0.94524 0.97594 0.94637 1.69725 1.05659 1.37038 1.38758 0.86350 0.77081 0.79247 0.82189 1.17869 1.24911 1.20622 1.22105 0.94279 0.94541 0.86882 1.22822 1.03042 0.97134 0.93620 1.22285 1.00091 0.95926 0.97654 1.22041 1.00939 0.95739 0.96857 1.22477 1.03103 0.97816 0.93999 0.92915 0.92886 0.93074 0.92045 0.92071 0.91742 0.92157 0.91514 0.91435 0.92072 0.90895 0.93131 0.91758 0.93485 0.92070 0.90436 0.92360 0.89519 0.92344 0.92140 0.91988 0.92735 0.89848 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.31 5.93 -26.73 -0.16 -1.46 16 3 C -0.12 -1.39 4.98 -26.73 -0.13 -1.52 16 4 C -0.11 -1.58 4.45 -26.73 -0.12 -1.70 16 5 C -0.11 -1.90 1.33 -91.77 -0.12 -2.02 16 6 H 0.08 1.29 6.38 -51.93 -0.33 0.96 16 7 C -0.10 -1.75 4.96 -26.73 -0.13 -1.88 16 8 C -0.16 -2.87 9.74 37.16 0.36 -2.51 16 9 C 0.46 10.69 4.48 -10.98 -0.05 10.64 16 10 O -0.54 -14.87 10.61 5.55 0.06 -14.81 16 11 N -0.46 -10.77 2.16 -105.77 -0.23 -11.00 16 12 C -0.34 -9.37 8.30 -14.93 -0.12 -9.49 16 13 H 0.09 2.72 6.56 -52.49 -0.34 2.37 16 14 C 0.09 2.55 4.98 -17.46 -0.09 2.46 16 15 N -0.88 -27.09 13.96 55.50 0.77 -26.31 16 16 Si 0.92 24.91 22.22 -169.99 -3.78 21.13 16 17 H -0.25 -7.15 6.00 56.52 0.34 -6.81 16 18 H -0.32 -8.63 7.11 56.52 0.40 -8.23 16 19 H -0.28 -7.21 6.89 56.52 0.39 -6.82 16 20 C 0.13 2.35 2.84 -66.08 -0.19 2.17 16 21 C -0.13 -2.16 6.39 -24.55 -0.16 -2.31 16 22 C -0.12 -1.66 6.82 -25.07 -0.17 -1.84 16 23 C -0.12 -1.71 6.80 -25.61 -0.17 -1.88 16 24 C -0.14 -2.42 6.44 -25.61 -0.16 -2.58 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.73 6.45 -51.93 -0.34 0.39 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.02 7.67 -51.93 -0.40 0.63 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.83 6.32 -51.93 -0.33 0.50 16 35 H 0.07 1.35 7.67 -51.93 -0.40 0.95 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.39 3.54 -51.93 -0.18 1.21 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 40 H 0.08 1.28 5.13 -51.93 -0.27 1.01 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.70 6.20 -51.93 -0.32 1.38 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 47 H 0.08 1.77 7.35 -51.93 -0.38 1.39 16 48 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -31.99 351.01 -7.77 -39.76 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.84 Total: 0.83 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.05 Total: -14.90 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.55 Total: -37.31 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.06 Total: -14.81 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -3.78 Total: 21.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.99 -7.77 -39.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.214 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds