Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47287 * 2 1 4 4 C 1.52989 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47404 * 184.81106 * 4 3 2 6 6 H 1.09005 * 109.46974 * 55.41029 * 5 4 3 7 7 C 1.53003 * 109.47246 * 295.40986 * 5 4 3 8 8 C 1.52998 * 109.47112 * 302.30207 * 7 5 4 9 9 C 1.50702 * 109.47489 * 175.40766 * 5 4 3 10 10 O 1.21293 * 119.99911 * 10.82096 * 9 5 4 11 11 N 1.34777 * 119.99841 * 191.09770 * 9 5 4 12 12 C 1.37104 * 119.99702 * 184.09377 * 11 9 5 13 13 H 1.08001 * 119.99910 * 223.01215 * 12 11 9 14 14 C 1.38946 * 120.00213 * 43.00812 * 12 11 9 15 15 N 1.31421 * 119.99844 * 13.32991 * 14 12 11 16 16 Si 1.86799 * 120.00001 * 193.33907 * 14 12 11 17 17 H 1.48496 * 109.47342 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47413 * 119.99862 * 16 14 12 19 19 H 1.48507 * 109.46872 * 239.99590 * 16 14 12 20 20 C 1.46496 * 120.00156 * 4.09170 * 11 9 5 21 21 C 1.54265 * 110.03341 * 231.33947 * 20 11 9 22 22 C 1.54968 * 104.16395 * 217.13952 * 21 20 11 23 23 C 1.54887 * 102.77359 * 37.88783 * 22 21 20 24 24 C 1.53878 * 110.02905 * 114.12519 * 20 11 9 25 25 H 1.09002 * 109.47074 * 300.00306 * 1 2 3 26 26 H 1.08999 * 109.46797 * 60.00192 * 1 2 3 27 27 H 1.08998 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47619 * 239.99605 * 2 1 3 29 29 H 1.09006 * 109.47183 * 119.99752 * 2 1 3 30 30 H 1.09004 * 109.46687 * 59.99428 * 3 2 1 31 31 H 1.08999 * 109.46457 * 300.00137 * 3 2 1 32 32 H 1.09008 * 109.47437 * 64.81411 * 4 3 2 33 33 H 1.09001 * 109.47430 * 304.81144 * 4 3 2 34 34 H 1.08997 * 109.47124 * 62.30082 * 7 5 4 35 35 H 1.09000 * 109.46974 * 182.30336 * 7 5 4 36 36 H 1.09001 * 109.46796 * 66.23884 * 8 7 5 37 37 H 1.08993 * 109.47274 * 186.24171 * 8 7 5 38 38 H 1.09006 * 109.47164 * 306.24489 * 8 7 5 39 39 H 0.96994 * 119.99471 * 184.97724 * 15 14 12 40 40 H 1.08996 * 110.02086 * 352.73490 * 20 11 9 41 41 H 1.09004 * 110.48693 * 335.78823 * 21 20 11 42 42 H 1.09004 * 110.48531 * 98.42763 * 21 20 11 43 43 H 1.09000 * 110.71621 * 279.57729 * 22 21 20 44 44 H 1.08995 * 110.92180 * 156.29781 * 22 21 20 45 45 H 1.09007 * 110.48412 * 203.41083 * 23 22 21 46 46 H 1.08998 * 110.60362 * 80.82188 * 23 22 21 47 47 H 1.08999 * 110.03223 * 238.56473 * 24 20 11 48 48 H 1.08994 * 110.03410 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8799 0.1216 6 1 3.6507 3.3442 1.0095 7 6 3.6670 3.6738 -1.1194 8 6 4.2218 2.9896 -2.3704 9 6 5.5827 2.8719 0.2357 10 8 6.2013 1.8498 0.0264 11 7 6.2386 3.9990 0.5758 12 6 7.6094 4.0142 0.5979 13 1 8.1310 4.4962 1.4116 14 6 8.3276 3.4095 -0.4264 15 7 7.7187 3.0569 -1.5364 16 14 10.1583 3.0975 -0.2255 17 1 10.6003 3.5839 1.1061 18 1 10.4273 1.6412 -0.3353 19 1 10.9030 3.8198 -1.2881 20 6 5.4870 5.2080 0.9218 21 6 6.0069 6.4064 0.1013 22 6 5.9344 7.6004 1.0865 23 6 6.3544 6.9598 2.4326 24 6 5.7074 5.5596 2.4035 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9338 1.0050 -0.9291 33 1 3.9330 0.8560 0.8446 34 1 2.5794 3.7143 -1.1795 35 1 4.0652 4.6862 -1.0522 36 1 3.7400 2.0202 -2.4982 37 1 4.0234 3.6118 -3.2430 38 1 5.2972 2.8492 -2.2612 39 1 8.2031 2.5704 -2.2216 40 1 4.4253 5.0554 0.7282 41 1 7.0360 6.2347 -0.2147 42 1 5.3663 6.5840 -0.7625 43 1 4.9184 7.9909 1.1449 44 1 6.6326 8.3861 0.7980 45 1 5.9673 7.5416 3.2692 46 1 7.4394 6.8774 2.4962 47 1 4.7525 5.5786 2.9288 48 1 6.3739 4.8311 2.8650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -64.201484 kcal Electronic energy + Delta-G solvation = -24308.965601 eV Core-core repulsion = 21169.773412 eV Total energy + Delta-G solvation = -3139.192189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.22947 -37.13654 -35.73891 -33.59855 -33.11320 -31.29827 -29.48069 -28.01395 -26.89316 -26.62393 -24.38979 -23.00224 -21.49473 -20.33607 -20.00220 -19.40534 -18.33509 -16.06842 -15.82185 -15.54911 -14.98945 -14.77989 -14.25996 -14.03311 -13.84242 -13.46809 -13.23882 -12.71712 -12.67777 -12.39586 -12.21135 -12.01143 -11.64531 -11.32466 -11.09024 -10.99624 -10.93568 -10.84068 -10.71840 -10.61060 -10.53677 -10.44349 -10.37481 -10.27456 -10.17133 -10.13210 -10.06002 -9.81042 -9.73604 -9.61114 -8.63883 -7.78452 -6.93336 -5.96411 -3.74227 3.35204 3.44238 3.45417 4.32955 4.51491 4.90017 5.13217 5.16063 5.23601 5.28119 5.30504 5.43714 5.51449 5.54701 5.66518 5.73803 5.87732 5.90228 5.94357 5.96752 6.01088 6.12701 6.16323 6.17855 6.22715 6.26170 6.28265 6.32499 6.36945 6.41395 6.44527 6.46680 6.51104 6.59171 6.65700 6.67001 6.82448 6.84803 6.93333 7.03183 7.06316 7.26669 7.40630 7.76205 8.41819 9.22556 9.35114 9.83339 10.49832 11.09734 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.006443 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.034873 B = 4344.917053 C = 5467.653837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.096 4.096 5 C -0.105 4.105 6 H 0.067 0.933 7 C -0.106 4.106 8 C -0.161 4.161 9 C 0.490 3.510 10 O -0.534 6.534 11 N -0.454 5.454 12 C -0.328 4.328 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.833 5.833 16 Si 0.903 3.097 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.288 1.288 20 C 0.127 3.873 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.134 4.134 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.099 0.901 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 3.295 2.900 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.134 4.134 5 C -0.127 4.127 6 H 0.086 0.914 7 C -0.144 4.144 8 C -0.218 4.218 9 C 0.278 3.722 10 O -0.412 6.412 11 N -0.176 5.176 12 C -0.455 4.455 13 H 0.091 0.909 14 C -0.142 4.142 15 N -0.468 5.468 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.215 1.215 20 C 0.022 3.978 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.172 4.172 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.199 2.715 2.581 10.865 hybrid contribution 0.815 -0.070 0.012 0.818 sum -9.383 2.645 2.593 10.088 Atomic orbital electron populations 1.21779 0.96459 1.01053 1.01517 1.21534 0.95129 0.97626 1.01972 1.21675 0.96515 0.95973 1.01476 1.21355 0.93130 0.95800 1.03103 1.21344 0.96374 0.96830 0.98183 0.91430 1.21460 0.98878 0.99221 0.94811 1.21941 1.05488 0.98662 0.95740 1.19726 0.87166 0.83975 0.81380 1.90496 1.68517 1.31836 1.50313 1.43374 1.05067 1.06093 1.63081 1.18843 0.80102 1.40747 1.05858 0.90881 1.25134 0.98305 0.97103 0.93699 1.69774 1.37036 1.34662 1.05295 0.86292 0.84800 0.78069 0.77759 1.19855 1.20998 1.21458 1.21744 0.95455 0.87775 0.92830 1.22646 1.03769 0.93148 0.96677 1.22457 0.99965 0.97712 0.95977 1.22257 1.00659 0.95915 0.96641 1.22530 0.99801 0.97037 0.97867 0.92997 0.92957 0.93221 0.92147 0.92224 0.92627 0.92115 0.90988 0.92272 0.93143 0.91869 0.93849 0.94544 0.88185 0.93011 0.91085 0.88999 0.93035 0.92574 0.92409 0.93001 0.91728 0.93041 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.13 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.12 -1.66 4.84 -26.74 -0.13 -1.79 16 4 C -0.10 -1.72 3.72 -26.74 -0.10 -1.82 16 5 C -0.11 -2.04 1.64 -91.77 -0.15 -2.19 16 6 H 0.07 1.21 7.12 -51.93 -0.37 0.84 16 7 C -0.11 -1.90 5.01 -26.73 -0.13 -2.03 16 8 C -0.16 -3.16 9.19 37.16 0.34 -2.81 16 9 C 0.49 12.04 4.85 -10.98 -0.05 11.98 16 10 O -0.53 -15.38 13.70 5.55 0.08 -15.30 16 11 N -0.45 -10.89 2.43 -106.54 -0.26 -11.15 16 12 C -0.33 -8.70 7.21 -14.93 -0.11 -8.80 16 13 H 0.07 1.92 7.58 -52.49 -0.40 1.52 16 14 C 0.07 1.83 4.55 -17.47 -0.08 1.75 16 15 N -0.83 -23.74 10.50 55.50 0.58 -23.15 16 16 Si 0.90 21.81 29.58 -169.99 -5.03 16.78 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.13 2.47 2.33 -66.81 -0.16 2.31 16 21 C -0.12 -2.30 6.32 -25.03 -0.16 -2.46 16 22 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 23 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 24 C -0.13 -2.31 6.28 -25.61 -0.16 -2.47 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.83 6.85 -51.93 -0.36 0.47 16 32 H 0.07 1.42 6.24 -51.92 -0.32 1.10 16 33 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 34 H 0.05 0.77 6.78 -51.93 -0.35 0.41 16 35 H 0.06 1.17 5.83 -51.93 -0.30 0.87 16 36 H 0.04 0.79 6.65 -51.93 -0.35 0.45 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 2.42 6.14 -51.93 -0.32 2.10 16 39 H 0.26 7.26 8.32 -40.82 -0.34 6.92 16 40 H 0.07 1.29 4.54 -51.93 -0.24 1.05 16 41 H 0.09 2.01 6.78 -51.93 -0.35 1.65 16 42 H 0.05 0.91 7.86 -51.93 -0.41 0.51 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 1.41 7.41 -51.93 -0.38 1.02 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -29.80 356.95 -9.04 -38.85 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.78 Total: 3.83 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -1.02 Total: -15.23 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.32 Total: -34.30 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.80 -9.04 -38.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.354 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds