Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47528 * 2 1 4 4 C 1.53004 * 109.47342 * 175.28162 * 3 2 1 5 5 C 1.52998 * 109.46702 * 195.55352 * 4 3 2 6 6 C 1.52999 * 109.46817 * 295.28240 * 3 2 1 7 7 N 1.46907 * 109.47059 * 169.91541 * 6 3 2 8 8 C 1.46900 * 110.99562 * 256.36395 * 7 6 3 9 9 C 1.50695 * 109.47449 * 58.34903 * 8 7 6 10 10 H 1.08002 * 120.00063 * 353.87305 * 9 8 7 11 11 C 1.37882 * 120.00002 * 173.86068 * 9 8 7 12 12 N 1.31519 * 119.99896 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00084 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46887 * 90.00580 * 13 11 9 15 15 H 1.48504 * 109.47400 * 210.00615 * 13 11 9 16 16 H 1.48503 * 109.47434 * 330.00944 * 13 11 9 17 17 C 1.46897 * 110.99850 * 132.40744 * 7 6 3 18 18 C 1.50701 * 109.47370 * 284.60416 * 17 7 6 19 19 C 1.29987 * 118.56213 * 93.37504 * 18 17 7 20 20 C 1.50385 * 122.50978 * 180.43528 * 19 18 17 21 21 C 1.53127 * 109.59522 * 343.37771 * 20 19 18 22 22 O 1.43304 * 108.41302 * 47.82219 * 21 20 19 23 23 C 1.42884 * 113.02807 * 291.85573 * 22 21 20 24 24 H 1.09003 * 109.47268 * 65.91141 * 1 2 3 25 25 H 1.09002 * 109.47739 * 185.90663 * 1 2 3 26 26 H 1.08999 * 109.47535 * 305.91264 * 1 2 3 27 27 H 1.09007 * 109.47447 * 240.00010 * 2 1 3 28 28 H 1.09002 * 109.47324 * 120.00340 * 2 1 3 29 29 H 1.09001 * 109.47191 * 55.27785 * 3 2 1 30 30 H 1.08998 * 109.46960 * 315.54874 * 4 3 2 31 31 H 1.08998 * 109.46740 * 75.55251 * 4 3 2 32 32 H 1.09004 * 109.46711 * 199.83721 * 5 4 3 33 33 H 1.09004 * 109.47136 * 319.83264 * 5 4 3 34 34 H 1.08995 * 109.47509 * 79.84160 * 5 4 3 35 35 H 1.09001 * 109.47556 * 49.91705 * 6 3 2 36 36 H 1.09003 * 109.47121 * 289.90995 * 6 3 2 37 37 H 1.09001 * 109.46849 * 178.35411 * 8 7 6 38 38 H 1.09003 * 109.47023 * 298.34802 * 8 7 6 39 39 H 0.97000 * 119.99483 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.46520 * 164.60868 * 17 7 6 41 41 H 1.09000 * 109.47493 * 44.61052 * 17 7 6 42 42 H 1.08003 * 118.74532 * 0.46031 * 19 18 17 43 43 H 1.09007 * 109.44836 * 223.33686 * 20 19 18 44 44 H 1.08998 * 109.43105 * 103.40477 * 20 19 18 45 45 H 1.09003 * 109.68281 * 167.56456 * 21 20 19 46 46 H 1.09003 * 109.68452 * 288.08214 * 21 20 19 47 47 H 1.09002 * 109.32722 * 289.92233 * 23 22 21 48 48 H 1.08996 * 109.26190 * 170.28114 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5654 1.4440 0.1187 5 6 4.0453 2.8443 0.5056 6 6 1.6292 2.1286 -1.3043 7 7 1.9026 3.5687 -1.2073 8 6 0.6639 4.3257 -0.9823 9 6 0.0007 3.8400 0.2807 10 1 0.3992 2.9841 0.8051 11 6 -1.1146 4.4886 0.7670 12 7 -1.6000 5.5308 0.1283 13 14 -1.9371 3.8863 2.3322 14 1 -1.3339 4.5715 3.5036 15 1 -3.3899 4.1885 2.2760 16 1 -1.7411 2.4199 2.4617 17 6 2.6057 4.0528 -2.4027 18 6 4.0476 3.6179 -2.3482 19 6 4.3841 2.5066 -2.9326 20 6 5.7943 1.9843 -2.9252 21 6 6.7561 3.1082 -2.5295 22 8 6.2360 3.7597 -1.3639 23 6 5.0331 4.4870 -1.6201 24 1 -0.3634 0.4194 -0.9382 25 1 -0.3635 -1.0222 0.1058 26 1 -0.3634 0.6028 0.8323 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6093 1.9802 0.8447 30 1 3.8710 0.7308 0.8842 31 1 4.0045 1.1608 -0.8379 32 1 5.1005 2.9494 0.2531 33 1 3.4656 3.5903 -0.0383 34 1 3.9119 2.9910 1.5773 35 1 0.5645 1.9718 -1.4778 36 1 2.1984 1.7058 -2.1322 37 1 0.8984 5.3857 -0.8852 38 1 -0.0101 4.1786 -1.8263 39 1 -2.3848 5.9868 0.4703 40 1 2.5556 5.1411 -2.4379 41 1 2.1347 3.6384 -3.2941 42 1 3.6219 1.9369 -3.4434 43 1 6.0515 1.6196 -3.9197 44 1 5.8749 1.1681 -2.2073 45 1 7.7383 2.6901 -2.3089 46 1 6.8376 3.8260 -3.3457 47 1 5.2629 5.3612 -2.2292 48 1 4.5998 4.8101 -0.6736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101040.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -33.788173 kcal Electronic energy + Delta-G solvation = -24640.833059 eV Core-core repulsion = 21502.959690 eV Total energy + Delta-G solvation = -3137.873369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66019 -37.77360 -35.04674 -33.62105 -32.41898 -31.48391 -31.02020 -27.46083 -27.01288 -25.33362 -24.97554 -23.75594 -22.32467 -21.23691 -20.43678 -19.28907 -17.88928 -16.48281 -16.17442 -16.02953 -15.21216 -14.93233 -14.61366 -14.12159 -13.79663 -13.70251 -13.29322 -12.99498 -12.87597 -12.60591 -12.49161 -12.34402 -12.10808 -11.78339 -11.67230 -11.52905 -11.15585 -10.99856 -10.83731 -10.81412 -10.70720 -10.54537 -10.33692 -10.24827 -10.06774 -9.70814 -9.60251 -9.50694 -9.22897 -8.87225 -8.55013 -8.40059 -7.07155 -6.01563 -4.01242 2.40966 3.32395 3.38981 3.41547 4.03001 4.43990 4.86934 4.96585 5.04042 5.07282 5.26766 5.35202 5.46252 5.49476 5.55185 5.59185 5.65136 5.73928 5.79051 5.88361 5.95191 6.03994 6.05355 6.16185 6.16941 6.20247 6.26978 6.32860 6.40283 6.53894 6.62682 6.70485 6.73985 6.77245 6.86832 6.95102 7.04040 7.07683 7.19244 7.27507 7.34068 7.36591 7.67997 7.93901 8.07732 8.24162 8.55951 9.08124 9.62873 11.09813 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.005944 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.715100 B = 4709.249210 C = 5341.974782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.086 4.086 4 C -0.099 4.099 5 C -0.184 4.184 6 C 0.073 3.927 7 N -0.523 5.523 8 C 0.192 3.808 9 C -0.507 4.507 10 H 0.075 0.925 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.272 1.272 17 C 0.083 3.917 18 C -0.124 4.124 19 C -0.161 4.161 20 C -0.118 4.118 21 C 0.058 3.942 22 O -0.373 6.373 23 C 0.095 3.905 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.029 0.971 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.033 0.967 38 H -0.015 1.015 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.512 -6.803 -5.867 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.105 4.105 4 C -0.136 4.136 5 C -0.241 4.241 6 C -0.055 4.055 7 N -0.247 5.247 8 C 0.067 3.933 9 C -0.546 4.546 10 H 0.093 0.907 11 C -0.144 4.144 12 N -0.539 5.539 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.197 1.197 17 C -0.045 4.045 18 C -0.125 4.125 19 C -0.180 4.180 20 C -0.155 4.155 21 C -0.019 4.019 22 O -0.291 6.291 23 C 0.019 3.981 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.002 0.998 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.122 0.878 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.725 -6.582 -5.277 15.267 hybrid contribution -1.356 -0.489 -0.106 1.446 sum 11.368 -7.071 -5.382 14.429 Atomic orbital electron populations 1.21803 0.95991 1.00111 1.02932 1.21544 0.95887 0.97497 1.00408 1.21423 0.95238 0.93839 1.00014 1.21399 0.95256 0.97546 0.99438 1.22657 1.01385 0.99362 1.00668 1.22094 0.99315 0.88333 0.95803 1.62100 1.26070 1.03494 1.33003 1.19869 0.83814 0.93811 0.95827 1.21406 1.10341 1.14316 1.08491 0.90674 1.24956 0.97251 0.95040 0.97192 1.69960 1.23781 1.20541 1.39640 0.86620 0.78488 0.79244 0.83826 1.20701 1.21476 1.19734 1.21110 0.90309 1.00159 0.92963 1.21569 0.96531 0.96979 0.97377 1.21877 0.96712 0.97010 1.02440 1.21026 0.93734 0.99145 1.01642 1.22575 0.96663 0.93959 0.88741 1.88135 1.40390 1.68026 1.32555 1.21586 0.83271 0.91942 1.01333 0.92453 0.94169 0.92111 0.93299 0.92946 0.89018 0.94746 0.93299 0.93040 0.86475 0.95227 0.92933 0.94111 0.94862 0.99765 0.93077 0.90902 0.95019 0.87840 0.90948 0.90409 0.89243 0.93292 0.92973 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.53 37.15 0.35 -2.15 16 2 C -0.12 -1.82 5.37 -26.74 -0.14 -1.97 16 3 C -0.09 -1.55 1.84 -90.62 -0.17 -1.71 16 4 C -0.10 -1.64 5.22 -26.73 -0.14 -1.78 16 5 C -0.18 -3.22 7.37 37.16 0.27 -2.94 16 6 C 0.07 1.35 3.75 -3.82 -0.01 1.34 16 7 N -0.52 -10.36 1.86 -237.51 -0.44 -10.80 16 8 C 0.19 4.71 4.49 -4.98 -0.02 4.68 16 9 C -0.51 -13.42 8.47 -34.44 -0.29 -13.71 16 10 H 0.08 1.94 4.49 -52.49 -0.24 1.71 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 13 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.08 1.40 4.90 -4.98 -0.02 1.38 16 18 C -0.12 -1.81 3.44 -101.01 -0.35 -2.15 16 19 C -0.16 -2.15 6.96 -35.89 -0.25 -2.40 16 20 C -0.12 -1.32 6.34 -27.97 -0.18 -1.50 16 21 C 0.06 0.64 6.89 37.22 0.26 0.89 16 22 O -0.37 -5.24 9.06 -35.23 -0.32 -5.56 16 23 C 0.09 1.34 5.44 35.78 0.19 1.53 16 24 H 0.06 0.98 6.64 -51.93 -0.34 0.64 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.09 1.94 5.37 -51.93 -0.28 1.66 16 30 H 0.03 0.55 7.99 -51.93 -0.42 0.13 16 31 H 0.05 0.78 5.87 -51.93 -0.30 0.47 16 32 H 0.05 0.86 5.47 -51.93 -0.28 0.58 16 33 H 0.12 2.20 2.61 -51.93 -0.14 2.06 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 1.09 5.46 -51.93 -0.28 0.81 16 36 H 0.04 0.70 5.17 -51.93 -0.27 0.43 16 37 H 0.03 0.89 8.02 -51.93 -0.42 0.47 16 38 H -0.02 -0.41 8.13 -51.93 -0.42 -0.83 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 41 H 0.03 0.53 7.70 -51.93 -0.40 0.13 16 42 H 0.10 1.40 6.76 -52.48 -0.35 1.05 16 43 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 44 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.12 1.82 5.97 -51.93 -0.31 1.51 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -27.86 343.34 -8.67 -36.53 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.20 Total: 2.75 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -0.60 Total: -19.03 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.29 Total: -36.22 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.32 Total: -5.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.86 -8.67 -36.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101040.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.745 kcal (2) G-P(sol) polarization free energy of solvation -27.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds