Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 C 1.52998 * 109.47042 * 120.00262 * 2 1 3 5 5 C 1.50698 * 109.47144 * 299.99939 * 4 2 1 6 6 H 1.07997 * 119.99955 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00088 * 180.28081 * 5 4 2 8 8 N 1.31508 * 119.99735 * 179.72435 * 7 5 4 9 9 Si 1.86796 * 119.99596 * 359.72038 * 7 5 4 10 10 H 1.48502 * 109.46989 * 90.00644 * 9 7 5 11 11 H 1.48505 * 109.46847 * 209.99971 * 9 7 5 12 12 H 1.48499 * 109.47515 * 330.00112 * 9 7 5 13 13 C 1.53001 * 109.46947 * 239.99933 * 2 1 3 14 14 N 1.46904 * 109.47073 * 66.98367 * 13 2 1 15 15 C 1.46853 * 110.99792 * 87.84560 * 14 13 2 16 16 C 1.53039 * 109.49979 * 174.12031 * 15 14 13 17 17 C 1.53092 * 109.29011 * 59.21041 * 16 15 14 18 18 H 1.09000 * 109.53050 * 182.45927 * 17 16 15 19 19 O 1.42874 * 109.40607 * 62.17473 * 17 16 15 20 20 C 1.42890 * 114.16256 * 179.38691 * 19 17 16 21 21 C 1.53099 * 109.40659 * 61.14827 * 20 19 17 22 22 C 1.53176 * 109.12943 * 302.32887 * 21 20 19 23 23 C 1.53138 * 109.20061 * 302.40437 * 17 16 15 24 24 H 1.08994 * 109.55017 * 297.14473 * 23 17 16 25 25 C 1.46837 * 110.99712 * 323.63321 * 14 13 2 26 26 H 1.09004 * 109.46841 * 262.09788 * 1 2 3 27 27 H 1.08997 * 109.47526 * 22.10338 * 1 2 3 28 28 H 1.09006 * 109.47160 * 142.10755 * 1 2 3 29 29 H 1.09000 * 109.47272 * 205.01522 * 3 2 1 30 30 H 1.08999 * 109.46707 * 325.01685 * 3 2 1 31 31 H 1.09001 * 109.46755 * 85.01113 * 3 2 1 32 32 H 1.09006 * 109.46891 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47362 * 60.00108 * 4 2 1 34 34 H 0.97005 * 119.99478 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46861 * 186.98403 * 13 2 1 36 36 H 1.09002 * 109.47508 * 306.98639 * 13 2 1 37 37 H 1.08997 * 109.46487 * 294.13017 * 15 14 13 38 38 H 1.09002 * 109.46433 * 54.11748 * 15 14 13 39 39 H 1.09003 * 109.49613 * 179.15470 * 16 15 14 40 40 H 1.08995 * 109.49892 * 299.22735 * 16 15 14 41 41 H 1.08999 * 109.48441 * 301.16722 * 20 19 17 42 42 H 1.09003 * 109.49310 * 181.12940 * 20 19 17 43 43 H 1.09004 * 109.53000 * 182.43423 * 21 20 19 44 44 H 1.09004 * 109.53077 * 62.22388 * 21 20 19 45 45 H 1.08999 * 109.53793 * 297.15066 * 22 21 20 46 46 H 1.09007 * 109.53615 * 176.90217 * 22 21 20 47 47 H 1.08996 * 109.45707 * 305.83201 * 25 14 13 48 48 H 1.08997 * 109.45900 * 65.78597 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8755 -0.4787 3.7320 8 7 1.4416 0.1444 4.8057 9 14 2.9494 -1.9974 3.9032 10 1 4.3775 -1.5920 3.9420 11 1 2.6029 -2.7096 5.1594 12 1 2.7217 -2.8980 2.7447 13 6 2.0400 -0.7213 -1.2492 14 7 1.6926 0.0616 -2.4428 15 6 2.7345 1.0516 -2.7443 16 6 2.4121 1.7449 -4.0700 17 6 1.0472 2.4300 -3.9636 18 1 0.7939 2.8882 -4.9197 19 8 1.0973 3.4327 -2.9471 20 6 -0.1266 4.1488 -2.7711 21 6 -1.2314 3.1737 -2.3556 22 6 -1.3655 2.0830 -3.4227 23 6 -0.0129 1.3867 -3.5990 24 1 -0.0849 0.6462 -4.3955 25 6 0.3803 0.7020 -2.2884 26 1 -0.3633 -0.1413 1.0180 27 1 -0.3634 0.9521 -0.3867 28 1 -0.3634 -0.8110 -0.6312 29 1 3.0391 1.4746 -0.4346 30 1 1.3673 2.0656 -0.5892 31 1 2.0769 1.8148 1.0238 32 1 3.1300 -0.7217 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 1.6790 -0.1849 5.6867 35 1 3.1228 -0.8308 -1.1890 36 1 1.5782 -1.7065 -1.3140 37 1 2.7728 1.7932 -1.9465 38 1 3.6997 0.5510 -2.8216 39 1 3.1775 2.4902 -4.2864 40 1 2.3874 1.0057 -4.8706 41 1 -0.4025 4.6330 -3.7079 42 1 0.0021 4.9040 -1.9957 43 1 -2.1754 3.7107 -2.2628 44 1 -0.9746 2.7181 -1.3992 45 1 -1.6699 2.5330 -4.3677 46 1 -2.1123 1.3543 -3.1072 47 1 -0.3644 -0.0526 -2.0354 48 1 0.4300 1.4443 -1.4917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093507642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -20.231582 kcal Electronic energy + Delta-G solvation = -24953.126874 eV Core-core repulsion = 21815.841363 eV Total energy + Delta-G solvation = -3137.285511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86247 -38.38958 -35.13838 -34.04853 -32.61403 -31.31658 -30.06837 -27.86541 -27.01429 -26.69722 -25.05603 -23.30634 -22.57336 -21.87754 -20.79211 -18.73087 -18.09797 -16.70978 -16.32127 -15.76626 -15.53648 -15.20377 -15.01671 -14.20735 -14.07130 -13.83885 -13.62467 -13.22560 -12.97195 -12.92455 -12.55844 -12.46374 -12.36671 -11.79248 -11.68608 -11.47890 -11.13775 -11.00855 -10.86028 -10.78536 -10.61144 -10.55349 -10.43545 -10.16220 -10.12290 -9.88349 -9.75650 -9.59769 -9.47043 -9.19967 -8.98443 -8.49395 -7.50223 -6.00243 -3.95973 3.32806 3.40545 3.44555 3.79307 4.32437 4.48776 4.68966 4.77482 4.82572 4.91654 5.10369 5.19556 5.29980 5.33498 5.43525 5.49415 5.53940 5.61337 5.65108 5.70853 5.72489 5.81701 5.84925 5.89085 5.97235 6.02957 6.08526 6.14597 6.20492 6.23744 6.38321 6.40235 6.41832 6.47295 6.56735 6.66075 6.70950 7.03004 7.19198 7.25169 7.29255 7.35325 7.44993 7.56485 7.57636 7.84760 8.59501 9.05393 9.63158 11.12835 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.005158 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.550680 B = 5427.189101 C = 5831.098518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.150 4.150 4 C -0.002 4.002 5 C -0.507 4.507 6 H 0.077 0.923 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.036 3.964 16 C -0.106 4.106 17 C 0.095 3.905 18 H 0.050 0.950 19 O -0.373 6.373 20 C 0.063 3.937 21 C -0.162 4.162 22 C -0.115 4.115 23 C -0.119 4.119 24 H 0.078 0.922 25 C 0.029 3.971 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.008 0.992 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 4.697 -18.989 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.206 4.206 4 C -0.040 4.040 5 C -0.545 4.545 6 H 0.095 0.905 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.092 4.092 16 C -0.144 4.144 17 C 0.037 3.963 18 H 0.068 0.932 19 O -0.292 6.292 20 C -0.014 4.014 21 C -0.199 4.199 22 C -0.153 4.153 23 C -0.138 4.138 24 H 0.097 0.903 25 C -0.098 4.098 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.027 0.973 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.678 4.391 -19.099 19.780 hybrid contribution 0.366 -0.381 0.757 0.924 sum -2.312 4.010 -18.342 18.917 Atomic orbital electron populations 1.22669 0.95407 0.99753 1.02722 1.20959 0.95536 0.95811 0.95612 1.22430 0.99199 0.95881 1.03086 1.19623 0.95476 0.95746 0.93109 1.21126 1.31475 1.13167 0.88757 0.90542 1.25020 0.95849 0.96706 0.96021 1.69914 1.46207 1.40544 0.97829 0.86842 0.81143 0.84155 0.77494 1.20495 1.21594 1.19077 1.22443 1.00007 0.96583 0.87627 1.62210 1.02149 1.24714 1.36701 1.22462 0.94586 0.95103 0.97063 1.21595 0.95268 0.98720 0.98825 1.22071 0.96062 0.88133 0.89995 0.93176 1.87944 1.33330 1.50545 1.57394 1.22513 0.84827 0.93769 1.00291 1.22273 0.99305 0.97916 1.00434 1.21567 0.97156 0.97916 0.98645 1.21861 0.94451 0.97468 1.00034 0.90318 1.23431 0.91621 0.98714 0.96039 0.91090 0.92920 0.93855 0.93695 0.92820 0.90723 0.97337 0.96729 0.92911 0.91915 0.91436 0.91421 0.91661 0.91319 0.90431 0.93771 0.89058 0.91163 0.90282 0.92200 0.91368 0.90041 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 7.03 37.16 0.26 -2.49 16 2 C -0.08 -1.50 0.52 -154.51 -0.08 -1.58 16 3 C -0.15 -2.86 6.84 37.16 0.25 -2.60 16 4 C 0.00 -0.04 3.07 -27.89 -0.09 -0.12 16 5 C -0.51 -13.96 7.37 -34.44 -0.25 -14.22 16 6 H 0.08 2.26 6.69 -52.49 -0.35 1.90 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.75 13.96 55.43 0.77 -26.97 16 9 Si 0.88 21.85 27.46 -169.99 -4.67 17.18 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.41 6.55 56.52 0.37 -6.04 16 13 C 0.06 1.03 4.81 -3.82 -0.02 1.01 16 14 N -0.53 -8.00 4.86 -234.69 -1.14 -9.14 16 15 C 0.04 0.50 4.62 -3.83 -0.02 0.48 16 16 C -0.11 -1.26 5.82 -26.66 -0.16 -1.41 16 17 C 0.10 1.13 2.88 -26.61 -0.08 1.05 16 18 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 19 O -0.37 -4.97 9.24 -35.23 -0.33 -5.29 16 20 C 0.06 0.69 6.84 37.21 0.25 0.94 16 21 C -0.16 -1.75 5.77 -26.59 -0.15 -1.90 16 22 C -0.11 -1.20 5.52 -26.57 -0.15 -1.34 16 23 C -0.12 -1.42 2.67 -90.47 -0.24 -1.66 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 25 C 0.03 0.41 2.25 -3.85 -0.01 0.40 16 26 H 0.07 1.53 6.41 -51.93 -0.33 1.19 16 27 H 0.05 0.89 4.34 -51.93 -0.23 0.67 16 28 H 0.04 0.73 6.03 -51.93 -0.31 0.42 16 29 H 0.04 0.81 5.86 -51.93 -0.30 0.51 16 30 H 0.05 0.96 4.87 -51.93 -0.25 0.71 16 31 H 0.07 1.65 6.24 -51.93 -0.32 1.33 16 32 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 33 H 0.01 0.35 7.21 -51.93 -0.37 -0.03 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 36 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 37 H 0.07 1.07 3.93 -51.93 -0.20 0.86 16 38 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.02 5.90 -51.93 -0.31 0.71 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.21 5.42 -51.93 -0.28 0.93 16 48 H 0.09 1.34 0.72 -51.93 -0.04 1.30 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -29.52 324.06 -8.94 -38.46 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.89 Total: 2.56 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -0.57 Total: -21.67 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.37 Total: -36.11 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.33 Total: -5.29 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.52 -8.94 -38.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093507642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds