Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 C 1.52998 * 109.47042 * 120.00262 * 2 1 3 5 5 C 1.50698 * 109.47144 * 299.99939 * 4 2 1 6 6 H 1.07997 * 119.99955 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00088 * 180.28081 * 5 4 2 8 8 N 1.31508 * 119.99735 * 179.72435 * 7 5 4 9 9 Si 1.86796 * 119.99596 * 359.72038 * 7 5 4 10 10 H 1.48502 * 109.46989 * 90.00644 * 9 7 5 11 11 H 1.48505 * 109.46847 * 209.99971 * 9 7 5 12 12 H 1.48499 * 109.47515 * 330.00112 * 9 7 5 13 13 C 1.53001 * 109.46947 * 239.99933 * 2 1 3 14 14 N 1.46904 * 109.47073 * 66.98367 * 13 2 1 15 15 C 1.46853 * 110.99792 * 87.84560 * 14 13 2 16 16 C 1.53039 * 109.49979 * 174.12031 * 15 14 13 17 17 C 1.53092 * 109.29011 * 59.21041 * 16 15 14 18 18 H 1.09000 * 109.53050 * 182.45927 * 17 16 15 19 19 O 1.42874 * 109.40607 * 62.17473 * 17 16 15 20 20 C 1.42890 * 114.16256 * 179.38691 * 19 17 16 21 21 C 1.53099 * 109.40659 * 61.14827 * 20 19 17 22 22 C 1.53176 * 109.12943 * 302.32887 * 21 20 19 23 23 C 1.53138 * 109.20061 * 302.40437 * 17 16 15 24 24 H 1.08994 * 109.55017 * 297.14473 * 23 17 16 25 25 C 1.46837 * 110.99712 * 323.63321 * 14 13 2 26 26 H 1.09004 * 109.46841 * 262.09788 * 1 2 3 27 27 H 1.08997 * 109.47526 * 22.10338 * 1 2 3 28 28 H 1.09006 * 109.47160 * 142.10755 * 1 2 3 29 29 H 1.09000 * 109.47272 * 205.01522 * 3 2 1 30 30 H 1.08999 * 109.46707 * 325.01685 * 3 2 1 31 31 H 1.09001 * 109.46755 * 85.01113 * 3 2 1 32 32 H 1.09006 * 109.46891 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47362 * 60.00108 * 4 2 1 34 34 H 0.97005 * 119.99478 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46861 * 186.98403 * 13 2 1 36 36 H 1.09002 * 109.47508 * 306.98639 * 13 2 1 37 37 H 1.08997 * 109.46487 * 294.13017 * 15 14 13 38 38 H 1.09002 * 109.46433 * 54.11748 * 15 14 13 39 39 H 1.09003 * 109.49613 * 179.15470 * 16 15 14 40 40 H 1.08995 * 109.49892 * 299.22735 * 16 15 14 41 41 H 1.08999 * 109.48441 * 301.16722 * 20 19 17 42 42 H 1.09003 * 109.49310 * 181.12940 * 20 19 17 43 43 H 1.09004 * 109.53000 * 182.43423 * 21 20 19 44 44 H 1.09004 * 109.53077 * 62.22388 * 21 20 19 45 45 H 1.08999 * 109.53793 * 297.15066 * 22 21 20 46 46 H 1.09007 * 109.53615 * 176.90217 * 22 21 20 47 47 H 1.08996 * 109.45707 * 305.83201 * 25 14 13 48 48 H 1.08997 * 109.45900 * 65.78597 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8755 -0.4787 3.7320 8 7 1.4416 0.1444 4.8057 9 14 2.9494 -1.9974 3.9032 10 1 4.3775 -1.5920 3.9420 11 1 2.6029 -2.7096 5.1594 12 1 2.7217 -2.8980 2.7447 13 6 2.0400 -0.7213 -1.2492 14 7 1.6926 0.0616 -2.4428 15 6 2.7345 1.0516 -2.7443 16 6 2.4121 1.7449 -4.0700 17 6 1.0472 2.4300 -3.9636 18 1 0.7939 2.8882 -4.9197 19 8 1.0973 3.4327 -2.9471 20 6 -0.1266 4.1488 -2.7711 21 6 -1.2314 3.1737 -2.3556 22 6 -1.3655 2.0830 -3.4227 23 6 -0.0129 1.3867 -3.5990 24 1 -0.0849 0.6462 -4.3955 25 6 0.3803 0.7020 -2.2884 26 1 -0.3633 -0.1413 1.0180 27 1 -0.3634 0.9521 -0.3867 28 1 -0.3634 -0.8110 -0.6312 29 1 3.0391 1.4746 -0.4346 30 1 1.3673 2.0656 -0.5892 31 1 2.0769 1.8148 1.0238 32 1 3.1300 -0.7217 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 1.6790 -0.1849 5.6867 35 1 3.1228 -0.8308 -1.1890 36 1 1.5782 -1.7065 -1.3140 37 1 2.7728 1.7932 -1.9465 38 1 3.6997 0.5510 -2.8216 39 1 3.1775 2.4902 -4.2864 40 1 2.3874 1.0057 -4.8706 41 1 -0.4025 4.6330 -3.7079 42 1 0.0021 4.9040 -1.9957 43 1 -2.1754 3.7107 -2.2628 44 1 -0.9746 2.7181 -1.3992 45 1 -1.6699 2.5330 -4.3677 46 1 -2.1123 1.3543 -3.1072 47 1 -0.3644 -0.0526 -2.0354 48 1 0.4300 1.4443 -1.4917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093507642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -39.021011 kcal Electronic energy + Delta-G solvation = -24953.941645 eV Core-core repulsion = 21815.841363 eV Total energy + Delta-G solvation = -3138.100282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97788 -39.59594 -36.50197 -34.96080 -34.51747 -32.68921 -31.16014 -29.58711 -28.44406 -28.16865 -26.02801 -24.66513 -23.85376 -23.23765 -21.82954 -19.82811 -19.67884 -18.74395 -17.33696 -16.72477 -16.62421 -16.41088 -16.35422 -15.93385 -15.32767 -15.13083 -14.94841 -14.70959 -14.36854 -14.17456 -13.92926 -13.63181 -13.48285 -13.19784 -13.06776 -12.82513 -12.47308 -12.40438 -12.31914 -12.14916 -12.01655 -11.93824 -11.77945 -11.67652 -11.53412 -11.26634 -11.21625 -10.95977 -10.91952 -10.79597 -10.71420 -10.15036 -8.79691 -8.23720 -6.23404 1.34500 1.36157 1.47549 2.38033 2.92000 3.11365 3.17667 3.77490 3.86362 3.90287 4.01900 4.07676 4.11754 4.18446 4.25714 4.31409 4.38063 4.57715 4.59582 4.70765 4.73083 4.74553 4.75385 4.84193 4.89254 4.90148 4.95176 4.97678 5.00141 5.06117 5.08854 5.09848 5.19149 5.24021 5.34424 5.36309 5.37043 5.40645 5.49145 5.53719 5.64224 5.73268 5.80711 6.26711 6.35159 6.40024 6.43615 6.82487 7.38426 8.92584 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.005158 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.550680 B = 5427.189101 C = 5831.098518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.135 4.135 4 C 0.001 3.999 5 C -0.502 4.502 6 H 0.041 0.959 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.249 1.249 13 C 0.068 3.932 14 N -0.528 5.528 15 C 0.033 3.967 16 C -0.103 4.103 17 C 0.092 3.908 18 H 0.070 0.930 19 O -0.397 6.397 20 C 0.059 3.941 21 C -0.161 4.161 22 C -0.112 4.112 23 C -0.115 4.115 24 H 0.087 0.913 25 C 0.028 3.972 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.009 0.991 33 H 0.015 0.985 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 3.980 -21.974 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C -0.192 4.192 4 C -0.037 4.037 5 C -0.540 4.540 6 H 0.059 0.941 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.172 1.172 13 C -0.060 4.060 14 N -0.250 5.250 15 C -0.095 4.095 16 C -0.140 4.140 17 C 0.035 3.965 18 H 0.088 0.912 19 O -0.316 6.316 20 C -0.018 4.018 21 C -0.198 4.198 22 C -0.150 4.150 23 C -0.134 4.134 24 H 0.105 0.895 25 C -0.098 4.098 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.381 3.677 -22.111 22.541 hybrid contribution 0.217 -0.050 1.670 1.685 sum -2.164 3.628 -20.441 20.873 Atomic orbital electron populations 1.22605 0.94971 1.01301 1.00671 1.20929 0.95916 0.95584 0.95216 1.22302 1.00185 0.96025 1.00678 1.19580 0.95312 0.95600 0.93216 1.21373 1.30077 1.11984 0.90540 0.94118 1.25921 0.97635 1.00188 0.95728 1.70067 1.48344 1.42726 0.98440 0.85789 0.79274 0.80367 0.77980 1.19701 1.21377 1.17225 1.22322 1.00076 0.96712 0.86913 1.62282 1.02718 1.25067 1.34939 1.22496 0.94635 0.94494 0.97853 1.21597 0.95706 0.99046 0.97658 1.22181 0.95891 0.87955 0.90496 0.91212 1.87919 1.34535 1.51072 1.58093 1.22636 0.84139 0.93661 1.01342 1.22252 1.00084 0.98212 0.99276 1.21570 0.96321 0.97690 0.99389 1.21830 0.95329 0.97626 0.98597 0.89498 1.23342 0.91081 0.98117 0.97283 0.94922 0.91600 0.91972 0.92750 0.91630 0.94737 0.97259 0.96693 0.92898 0.91646 0.90995 0.93404 0.91137 0.90423 0.89061 0.91684 0.89213 0.89524 0.93029 0.90108 0.91252 0.90657 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 7.03 71.98 0.51 -4.67 16 2 C -0.08 -2.88 0.52 -52.18 -0.03 -2.91 16 3 C -0.14 -5.27 6.84 71.98 0.49 -4.78 16 4 C 0.00 0.04 3.07 29.85 0.09 0.13 16 5 C -0.50 -28.59 7.37 25.60 0.19 -28.40 16 6 H 0.04 2.55 6.69 -2.91 -0.02 2.53 16 7 C 0.00 0.06 5.47 84.66 0.46 0.52 16 8 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 9 Si 0.94 45.30 27.46 68.60 1.88 47.18 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 12 H -0.25 -11.16 6.55 99.48 0.65 -10.51 16 13 C 0.07 2.18 4.81 86.30 0.41 2.60 16 14 N -0.53 -14.66 4.86 -896.42 -4.35 -19.02 16 15 C 0.03 0.86 4.62 86.33 0.40 1.25 16 16 C -0.10 -2.12 5.82 30.64 0.18 -1.94 16 17 C 0.09 1.91 2.88 30.67 0.09 2.00 16 18 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 19 O -0.40 -9.82 9.24 -148.98 -1.38 -11.19 16 20 C 0.06 1.17 6.84 72.02 0.49 1.66 16 21 C -0.16 -3.20 5.77 30.69 0.18 -3.03 16 22 C -0.11 -2.02 5.52 30.70 0.17 -1.85 16 23 C -0.11 -2.41 2.67 -10.70 -0.03 -2.44 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 C 0.03 0.76 2.25 86.32 0.19 0.95 16 26 H 0.03 1.44 6.41 -2.38 -0.02 1.43 16 27 H 0.07 2.27 4.34 -2.39 -0.01 2.26 16 28 H 0.06 2.05 6.03 -2.38 -0.01 2.03 16 29 H 0.05 1.98 5.86 -2.39 -0.01 1.96 16 30 H 0.07 2.39 4.87 -2.39 -0.01 2.38 16 31 H 0.03 1.59 6.24 -2.39 -0.01 1.57 16 32 H 0.01 0.43 7.56 -2.38 -0.02 0.41 16 33 H 0.01 0.70 7.21 -2.39 -0.02 0.68 16 34 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 35 H 0.06 2.07 7.66 -2.39 -0.02 2.05 16 36 H 0.07 2.26 7.96 -2.39 -0.02 2.25 16 37 H 0.05 1.45 3.93 -2.39 -0.01 1.44 16 38 H 0.07 1.75 7.90 -2.39 -0.02 1.73 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.05 1.31 5.90 -2.38 -0.01 1.30 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.08 2.10 5.42 -2.39 -0.01 2.08 16 48 H 0.07 2.10 0.72 -2.39 0.00 2.10 16 Total: -1.00 -65.14 324.06 1.14 -64.00 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.89 Total: 20.15 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 3.80 Total: -40.89 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -4.06 Total: -79.26 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.38 Total: -11.19 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -65.14 1.14 -64.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093507642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.979 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds