Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47303 * 2 1 4 4 C 1.53007 * 109.47007 * 119.99667 * 2 1 3 5 5 C 1.52995 * 109.46958 * 67.93160 * 4 2 1 6 6 C 1.50699 * 110.54008 * 56.75047 * 5 4 2 7 7 O 1.21273 * 120.00317 * 243.96631 * 6 5 4 8 8 N 1.34781 * 119.99901 * 63.96713 * 6 5 4 9 9 C 1.46496 * 120.00207 * 184.79593 * 8 6 5 10 10 C 1.53003 * 109.47324 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47285 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47337 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99781 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99850 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99807 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47210 * 89.99987 * 16 14 12 18 18 H 1.48494 * 109.47088 * 209.99630 * 16 14 12 19 19 H 1.48493 * 109.47142 * 330.00204 * 16 14 12 20 20 C 1.54887 * 110.48721 * 179.36425 * 5 4 2 21 21 C 1.54889 * 102.75132 * 156.62044 * 20 5 4 22 22 C 1.54262 * 104.19491 * 322.06036 * 21 20 5 23 23 C 1.53872 * 106.59885 * 23.60634 * 22 21 20 24 24 H 1.08997 * 109.46880 * 49.51766 * 1 2 3 25 25 H 1.08994 * 109.47432 * 169.52225 * 1 2 3 26 26 H 1.09001 * 109.46995 * 289.52074 * 1 2 3 27 27 H 1.08990 * 109.47431 * 239.99344 * 2 1 3 28 28 H 1.08995 * 109.46709 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46379 * 299.99878 * 3 2 1 30 30 H 1.09002 * 109.47156 * 59.99645 * 3 2 1 31 31 H 1.09001 * 109.46848 * 307.93383 * 4 2 1 32 32 H 1.08993 * 109.47261 * 187.93562 * 4 2 1 33 33 H 0.97006 * 119.99859 * 4.79686 * 8 6 5 34 34 H 1.08997 * 109.47505 * 300.00169 * 9 8 6 35 35 H 1.09008 * 109.46788 * 60.00017 * 9 8 6 36 36 H 1.08997 * 109.47232 * 300.00661 * 10 9 8 37 37 H 1.09003 * 109.46467 * 60.00338 * 10 9 8 38 38 H 1.09004 * 109.46802 * 300.00689 * 11 10 9 39 39 H 1.09000 * 109.46861 * 59.99976 * 11 10 9 40 40 H 0.97004 * 120.00014 * 180.02562 * 15 14 12 41 41 H 1.09000 * 110.75676 * 274.93529 * 20 5 4 42 42 H 1.09004 * 110.75601 * 38.30261 * 20 5 4 43 43 H 1.09004 * 110.48657 * 203.37680 * 21 20 5 44 44 H 1.09000 * 110.48115 * 80.73725 * 21 20 5 45 45 H 1.09003 * 110.02875 * 264.32074 * 22 21 20 46 46 H 1.09001 * 110.03023 * 142.89493 * 22 21 20 47 47 H 1.09001 * 110.03081 * 240.71628 * 23 22 21 48 48 H 1.09004 * 110.02911 * 119.29074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6990 -2.2096 1.1538 6 6 2.2778 -2.8050 -0.1037 7 8 1.5415 -3.2437 -0.9617 8 7 3.6140 -2.8501 -0.2750 9 6 4.1745 -3.3316 -1.5399 10 6 5.7023 -3.2806 -1.4730 11 6 6.2877 -3.7829 -2.7943 12 6 7.7924 -3.7332 -2.7282 13 1 8.2822 -3.3784 -1.8334 14 6 8.5438 -4.1406 -3.8100 15 7 9.8569 -4.0968 -3.7524 16 14 7.6967 -4.7550 -5.3574 17 1 7.4508 -3.6126 -6.2739 18 1 8.5634 -5.7537 -6.0329 19 1 6.4024 -5.3867 -4.9956 20 6 2.2195 -2.9661 2.4012 21 6 1.3095 -4.2187 2.4457 22 6 -0.0767 -3.6947 2.0171 23 6 0.1710 -2.4173 1.1958 24 1 -0.3633 0.6672 -0.7816 25 1 -0.3634 -1.0105 -0.1869 26 1 -0.3633 0.3434 0.9686 27 1 1.8934 -0.5139 -0.8898 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5655 -0.2957 2.1336 32 1 3.1207 -0.6000 1.3232 33 1 4.2044 -2.5637 0.4394 34 1 3.8522 -4.3584 -1.7127 35 1 3.8256 -2.6989 -2.3561 36 1 6.0243 -2.2537 -1.3003 37 1 6.0514 -3.9130 -0.6567 38 1 5.9656 -4.8097 -2.9673 39 1 5.9384 -3.1502 -3.6102 40 1 10.3856 -4.3831 -4.5137 41 1 3.2635 -3.2516 2.2721 42 1 2.0911 -2.3632 3.3001 43 1 1.2682 -4.6245 3.4566 44 1 1.6653 -4.9738 1.7448 45 1 -0.6764 -3.4623 2.8972 46 1 -0.5845 -4.4398 1.4048 47 1 -0.3085 -1.5650 1.6772 48 1 -0.2168 -2.5424 0.1848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094817210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = -78.665459 kcal Electronic energy + Delta-G solvation = -23161.815574 eV Core-core repulsion = 20021.996180 eV Total energy + Delta-G solvation = -3139.819394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82004 -37.65296 -35.74412 -35.43721 -33.33421 -31.61576 -30.35808 -29.22104 -27.15206 -27.04426 -25.35876 -23.43160 -21.86871 -20.58477 -20.46913 -20.21260 -18.89265 -17.05558 -16.59840 -16.18589 -15.81590 -15.10669 -14.96518 -14.64982 -14.19696 -14.00971 -13.72550 -13.51432 -13.44986 -12.90305 -12.70967 -12.43313 -12.30267 -12.15662 -11.96291 -11.88956 -11.57625 -11.41218 -11.29014 -11.06476 -10.90707 -10.86275 -10.74840 -10.64291 -10.48279 -10.28434 -10.14095 -9.93768 -9.76161 -9.40030 -9.22814 -8.80305 -8.56017 -6.06873 -4.05514 2.79341 3.30766 3.36462 3.38742 3.42889 4.21822 4.41208 4.44004 4.45426 4.74641 4.83108 4.88958 4.98992 5.17100 5.26155 5.27322 5.32141 5.41933 5.45814 5.52136 5.56707 5.57070 5.59498 5.65379 5.67407 5.68509 5.75628 5.81045 5.89169 5.90602 6.01420 6.03028 6.05114 6.10305 6.18644 6.23776 6.33441 6.40178 6.45042 6.72366 6.81063 7.22482 7.36008 7.68770 7.77248 8.39887 8.50067 8.96957 9.55524 11.06398 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.003645 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.400735 B = 7679.925972 C = 8181.112657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.083 4.083 6 C 0.527 3.473 7 O -0.543 6.543 8 N -0.726 5.726 9 C 0.115 3.885 10 C -0.113 4.113 11 C -0.011 4.011 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.111 4.111 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.880 6.921 14.116 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.086 4.086 6 C 0.313 3.687 7 O -0.420 6.420 8 N -0.376 5.376 9 C -0.008 4.008 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.240 6.573 13.364 25.129 hybrid contribution 0.160 -0.184 -0.585 0.633 sum -20.080 6.389 12.779 24.644 Atomic orbital electron populations 1.22356 0.95257 1.03289 1.01105 1.21136 0.96292 0.96163 0.98246 1.21834 1.01098 0.95850 1.01556 1.21687 1.01405 0.91861 0.98560 1.21680 0.97341 0.96008 0.93597 1.20240 0.82316 0.78208 0.87931 1.90654 1.59327 1.47324 1.44744 1.46143 1.06612 1.66493 1.18372 1.21625 0.95180 0.99392 0.84622 1.21696 0.90653 1.01579 1.01143 1.19499 0.96977 0.96122 0.92286 1.21097 0.89125 1.43693 1.02069 0.91023 1.25023 0.94708 0.95074 0.98630 1.69911 1.04675 1.48254 1.31365 0.86782 0.79983 0.79105 0.83482 1.20236 1.21347 1.18914 1.22617 0.99507 0.96509 0.96515 1.22365 0.95268 0.97456 1.01290 1.22166 0.97099 0.97643 0.99393 1.22534 0.93130 0.97455 1.01720 0.93268 0.90530 0.92893 0.91093 0.92582 0.92738 0.92846 0.90792 0.91334 0.76807 0.91885 0.92012 0.92174 0.92155 0.96352 0.96796 0.92696 0.91100 0.90331 0.91485 0.91605 0.92017 0.91814 0.90763 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 7.69 37.16 0.29 -1.23 16 2 C -0.10 -1.00 2.76 -90.61 -0.25 -1.25 16 3 C -0.15 -1.31 9.17 37.16 0.34 -0.97 16 4 C -0.10 -0.87 3.85 -26.73 -0.10 -0.97 16 5 C -0.08 -0.85 0.48 -154.01 -0.07 -0.92 16 6 C 0.53 7.37 4.84 -10.98 -0.05 7.31 16 7 O -0.54 -9.62 15.43 5.56 0.09 -9.53 16 8 N -0.73 -9.96 5.34 -60.29 -0.32 -10.28 16 9 C 0.11 1.91 5.68 -4.04 -0.02 1.89 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 12 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 13 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 16 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 20 C -0.11 -1.00 5.76 -24.74 -0.14 -1.14 16 21 C -0.13 -1.18 6.61 -25.07 -0.17 -1.35 16 22 C -0.13 -1.16 6.80 -25.62 -0.17 -1.34 16 23 C -0.11 -1.10 3.78 -25.62 -0.10 -1.20 16 24 H 0.05 0.45 8.11 -51.93 -0.42 0.03 16 25 H 0.08 0.78 4.50 -51.93 -0.23 0.55 16 26 H 0.05 0.41 7.51 -51.93 -0.39 0.02 16 27 H 0.07 0.91 6.90 -51.93 -0.36 0.55 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.55 7.98 -51.93 -0.41 0.14 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 33 H 0.40 4.55 7.74 -40.82 -0.32 4.23 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.07 0.62 7.20 -51.93 -0.37 0.25 16 42 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.61 6.10 -51.93 -0.32 0.30 16 48 H 0.09 1.07 5.21 -51.93 -0.27 0.80 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -31.77 362.88 -8.74 -40.51 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.94 Total: 0.70 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.14 Total: -17.00 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.45 Total: -37.29 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.77 -8.74 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.153 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds