Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47303 * 2 1 4 4 C 1.53007 * 109.47007 * 119.99667 * 2 1 3 5 5 C 1.52995 * 109.46958 * 67.93160 * 4 2 1 6 6 C 1.50699 * 110.54008 * 56.75047 * 5 4 2 7 7 O 1.21273 * 120.00317 * 243.96631 * 6 5 4 8 8 N 1.34781 * 119.99901 * 63.96713 * 6 5 4 9 9 C 1.46496 * 120.00207 * 184.79593 * 8 6 5 10 10 C 1.53003 * 109.47324 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47285 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47337 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99781 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99850 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99807 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47210 * 89.99987 * 16 14 12 18 18 H 1.48494 * 109.47088 * 209.99630 * 16 14 12 19 19 H 1.48493 * 109.47142 * 330.00204 * 16 14 12 20 20 C 1.54887 * 110.48721 * 179.36425 * 5 4 2 21 21 C 1.54889 * 102.75132 * 156.62044 * 20 5 4 22 22 C 1.54262 * 104.19491 * 322.06036 * 21 20 5 23 23 C 1.53872 * 106.59885 * 23.60634 * 22 21 20 24 24 H 1.08997 * 109.46880 * 49.51766 * 1 2 3 25 25 H 1.08994 * 109.47432 * 169.52225 * 1 2 3 26 26 H 1.09001 * 109.46995 * 289.52074 * 1 2 3 27 27 H 1.08990 * 109.47431 * 239.99344 * 2 1 3 28 28 H 1.08995 * 109.46709 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46379 * 299.99878 * 3 2 1 30 30 H 1.09002 * 109.47156 * 59.99645 * 3 2 1 31 31 H 1.09001 * 109.46848 * 307.93383 * 4 2 1 32 32 H 1.08993 * 109.47261 * 187.93562 * 4 2 1 33 33 H 0.97006 * 119.99859 * 4.79686 * 8 6 5 34 34 H 1.08997 * 109.47505 * 300.00169 * 9 8 6 35 35 H 1.09008 * 109.46788 * 60.00017 * 9 8 6 36 36 H 1.08997 * 109.47232 * 300.00661 * 10 9 8 37 37 H 1.09003 * 109.46467 * 60.00338 * 10 9 8 38 38 H 1.09004 * 109.46802 * 300.00689 * 11 10 9 39 39 H 1.09000 * 109.46861 * 59.99976 * 11 10 9 40 40 H 0.97004 * 120.00014 * 180.02562 * 15 14 12 41 41 H 1.09000 * 110.75676 * 274.93529 * 20 5 4 42 42 H 1.09004 * 110.75601 * 38.30261 * 20 5 4 43 43 H 1.09004 * 110.48657 * 203.37680 * 21 20 5 44 44 H 1.09000 * 110.48115 * 80.73725 * 21 20 5 45 45 H 1.09003 * 110.02875 * 264.32074 * 22 21 20 46 46 H 1.09001 * 110.03023 * 142.89493 * 22 21 20 47 47 H 1.09001 * 110.03081 * 240.71628 * 23 22 21 48 48 H 1.09004 * 110.02911 * 119.29074 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6990 -2.2096 1.1538 6 6 2.2778 -2.8050 -0.1037 7 8 1.5415 -3.2437 -0.9617 8 7 3.6140 -2.8501 -0.2750 9 6 4.1745 -3.3316 -1.5399 10 6 5.7023 -3.2806 -1.4730 11 6 6.2877 -3.7829 -2.7943 12 6 7.7924 -3.7332 -2.7282 13 1 8.2822 -3.3784 -1.8334 14 6 8.5438 -4.1406 -3.8100 15 7 9.8569 -4.0968 -3.7524 16 14 7.6967 -4.7550 -5.3574 17 1 7.4508 -3.6126 -6.2739 18 1 8.5634 -5.7537 -6.0329 19 1 6.4024 -5.3867 -4.9956 20 6 2.2195 -2.9661 2.4012 21 6 1.3095 -4.2187 2.4457 22 6 -0.0767 -3.6947 2.0171 23 6 0.1710 -2.4173 1.1958 24 1 -0.3633 0.6672 -0.7816 25 1 -0.3634 -1.0105 -0.1869 26 1 -0.3633 0.3434 0.9686 27 1 1.8934 -0.5139 -0.8898 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5655 -0.2957 2.1336 32 1 3.1207 -0.6000 1.3232 33 1 4.2044 -2.5637 0.4394 34 1 3.8522 -4.3584 -1.7127 35 1 3.8256 -2.6989 -2.3561 36 1 6.0243 -2.2537 -1.3003 37 1 6.0514 -3.9130 -0.6567 38 1 5.9656 -4.8097 -2.9673 39 1 5.9384 -3.1502 -3.6102 40 1 10.3856 -4.3831 -4.5137 41 1 3.2635 -3.2516 2.2721 42 1 2.0911 -2.3632 3.3001 43 1 1.2682 -4.6245 3.4566 44 1 1.6653 -4.9738 1.7448 45 1 -0.6764 -3.4623 2.8972 46 1 -0.5845 -4.4398 1.4048 47 1 -0.3085 -1.5650 1.6772 48 1 -0.2168 -2.5424 0.1848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094817210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = -97.386065 kcal Electronic energy + Delta-G solvation = -23162.627361 eV Core-core repulsion = 20021.996180 eV Total energy + Delta-G solvation = -3140.631181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78445 -38.68097 -36.94891 -36.43539 -35.17119 -33.37463 -31.30827 -29.97874 -28.84174 -27.75132 -26.12592 -24.98488 -23.05283 -22.22508 -21.29784 -20.95447 -20.01715 -18.95656 -17.75601 -17.18119 -16.98432 -16.35972 -16.23355 -15.91349 -15.42296 -15.00448 -14.84766 -14.79695 -14.44384 -14.27912 -13.83168 -13.65650 -13.61112 -13.12680 -12.97034 -12.84969 -12.76252 -12.71032 -12.37903 -12.15611 -11.99811 -11.92661 -11.80421 -11.63866 -11.61195 -11.48921 -11.37655 -11.34924 -11.20031 -11.03300 -10.77854 -10.60548 -10.05908 -8.30986 -6.34771 1.34867 1.36658 1.48368 1.69863 2.24763 2.34636 3.04708 3.46319 3.62517 3.67012 3.98749 4.02970 4.09971 4.12605 4.16966 4.24525 4.43857 4.47339 4.55941 4.60351 4.68744 4.74308 4.82994 4.84315 4.85886 4.88361 4.89250 4.95798 5.00244 5.01318 5.06494 5.10375 5.16774 5.19722 5.30776 5.32521 5.37738 5.40415 5.47278 5.48910 5.50510 5.52871 5.59767 5.63644 6.25816 6.60961 6.73110 7.29721 7.30371 8.85440 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.003645 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.400735 B = 7679.925972 C = 8181.112657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.094 4.094 5 C -0.078 4.078 6 C 0.525 3.475 7 O -0.585 6.585 8 N -0.719 5.719 9 C 0.128 3.872 10 C -0.099 4.099 11 C -0.012 4.012 12 C -0.530 4.530 13 H 0.038 0.962 14 C 0.007 3.993 15 N -0.949 5.949 16 Si 0.945 3.055 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.250 1.250 20 C -0.110 4.110 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.109 4.109 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.266 0.734 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.038 0.962 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.097 0.903 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 7.778 15.738 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.120 4.120 3 C -0.200 4.200 4 C -0.132 4.132 5 C -0.081 4.081 6 C 0.313 3.687 7 O -0.466 6.466 8 N -0.371 5.371 9 C 0.004 3.996 10 C -0.137 4.137 11 C -0.050 4.050 12 C -0.568 4.568 13 H 0.057 0.943 14 C -0.190 4.190 15 N -0.590 5.590 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.174 1.174 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.163 4.163 23 C -0.147 4.147 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.934 7.443 15.018 27.605 hybrid contribution 0.711 -0.432 -1.051 1.341 sum -21.223 7.011 13.967 26.356 Atomic orbital electron populations 1.22337 0.94714 1.02558 1.02222 1.21119 0.96802 0.96632 0.97434 1.21808 1.00839 0.95154 1.02246 1.21731 1.02075 0.90450 0.98897 1.21706 0.97404 0.96924 0.92055 1.20994 0.81754 0.77198 0.88762 1.90635 1.60208 1.49144 1.46569 1.46003 1.07075 1.66272 1.17706 1.21243 0.93642 0.98758 0.85935 1.21467 0.91779 1.01648 0.98765 1.19460 0.94054 0.96451 0.94996 1.21447 0.91674 1.42862 1.00865 0.94320 1.25951 0.95296 0.95433 1.02349 1.70051 1.06409 1.49824 1.32692 0.85724 0.79319 0.78892 0.79147 1.19197 1.20861 1.17418 1.22679 0.99200 0.96210 0.96614 1.22383 0.95357 0.97266 1.01634 1.22189 0.97306 0.96901 0.99928 1.22535 0.92856 0.98705 1.00584 0.93640 0.91791 0.90672 0.94683 0.92954 0.93262 0.90962 0.87968 0.90752 0.75255 0.92985 0.92838 0.91669 0.91777 0.96312 0.96361 0.92463 0.91113 0.87383 0.89557 0.94302 0.89628 0.93480 0.88455 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 7.69 71.98 0.55 -2.19 16 2 C -0.10 -1.89 2.76 -10.79 -0.03 -1.92 16 3 C -0.14 -2.30 9.17 71.98 0.66 -1.64 16 4 C -0.09 -1.40 3.85 30.60 0.12 -1.28 16 5 C -0.08 -1.45 0.48 -51.86 -0.02 -1.47 16 6 C 0.52 14.51 4.84 87.66 0.42 14.93 16 7 O -0.59 -21.27 15.43 -3.01 -0.05 -21.32 16 8 N -0.72 -19.29 5.34 -463.06 -2.47 -21.76 16 9 C 0.13 4.25 5.68 86.38 0.49 4.74 16 10 C -0.10 -3.64 5.27 30.59 0.16 -3.48 16 11 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 12 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 13 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 14 C 0.01 0.39 5.47 84.66 0.46 0.86 16 15 N -0.95 -59.46 13.96 21.45 0.30 -59.17 16 16 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 20 C -0.11 -1.60 5.76 31.88 0.18 -1.41 16 21 C -0.13 -2.17 6.61 31.67 0.21 -1.96 16 22 C -0.13 -2.11 6.80 31.32 0.21 -1.90 16 23 C -0.11 -1.99 3.78 31.32 0.12 -1.88 16 24 H 0.04 0.79 8.11 -2.39 -0.02 0.77 16 25 H 0.06 1.27 4.50 -2.39 -0.01 1.26 16 26 H 0.07 0.93 7.51 -2.39 -0.02 0.91 16 27 H 0.03 0.90 6.90 -2.39 -0.02 0.89 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.02 7.98 -2.39 -0.02 1.00 16 32 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.41 8.81 7.74 -92.70 -0.72 8.09 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.02 0.87 7.20 -2.38 -0.02 0.85 16 39 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.07 1.05 7.20 -2.39 -0.02 1.03 16 42 H 0.11 1.01 8.06 -2.39 -0.02 0.99 16 43 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 1.30 6.10 -2.39 -0.01 1.28 16 48 H 0.06 1.50 5.21 -2.38 -0.01 1.49 16 Total: -1.00 -70.58 362.88 3.71 -66.87 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.14 Total: 17.80 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.91 Total: -29.12 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.17 Total: -80.93 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -70.58 3.71 -66.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.518 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds