Wall clock time and date at job start Tue Mar 31 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 C 1.52999 * 109.47159 * 240.00288 * 2 1 3 5 5 C 1.53002 * 109.47197 * 119.99600 * 2 1 3 6 6 C 1.52996 * 109.46891 * 60.00410 * 5 2 1 7 7 C 1.52997 * 109.46947 * 179.97438 * 6 5 2 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46901 * 90.00358 * 16 14 12 18 18 H 1.48498 * 109.46773 * 209.99999 * 16 14 12 19 19 H 1.48494 * 109.46962 * 330.00109 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.09001 * 109.46812 * 299.99959 * 1 2 3 25 25 H 1.08992 * 109.47061 * 60.00326 * 1 2 3 26 26 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47261 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46866 * 299.99976 * 3 2 1 29 29 H 1.09001 * 109.47377 * 59.99827 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99545 * 4 2 1 31 31 H 1.09000 * 109.47486 * 59.99463 * 4 2 1 32 32 H 1.09001 * 109.47362 * 180.02562 * 4 2 1 33 33 H 1.08992 * 109.47056 * 300.00064 * 5 2 1 34 34 H 1.08996 * 109.46698 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.47372 * 59.99964 * 6 5 2 36 36 H 1.09004 * 109.47108 * 299.99708 * 6 5 2 37 37 H 1.09001 * 109.46832 * 59.99979 * 7 6 5 38 38 H 1.09000 * 109.47611 * 300.00276 * 7 6 5 39 39 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 40 40 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 41 41 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 43 43 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 44 44 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 45 45 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 46 46 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 47 47 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 48 48 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 6 1.5302 -2.1637 1.2493 7 6 2.0407 -2.8850 2.4982 8 6 1.5379 -4.3057 2.4986 9 8 0.8404 -4.7023 1.5892 10 7 1.8634 -5.1355 3.5095 11 6 1.3751 -6.5167 3.5095 12 6 2.3678 -7.4005 2.7993 13 1 3.2719 -6.9758 2.3886 14 6 2.1219 -8.7514 2.6738 15 7 1.0208 -9.2685 3.1735 16 14 3.3522 -9.8468 1.7929 17 1 4.3388 -10.3699 2.7716 18 1 2.6371 -10.9818 1.1561 19 1 4.0585 -9.0594 0.7507 20 6 2.7056 -4.6562 4.6083 21 6 1.8208 -4.0730 5.7119 22 6 1.9677 -2.5817 6.0209 23 6 2.5068 -3.6232 7.0035 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4427 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1301 -0.7216 -1.2491 33 1 1.6768 -0.2073 2.1392 34 1 3.1300 -0.7207 1.2494 35 1 1.8935 -2.6775 0.3593 36 1 0.4401 -2.1637 1.2493 37 1 1.6776 -2.3712 3.3884 38 1 3.1307 -2.8849 2.4979 39 1 1.2540 -6.8592 4.5373 40 1 0.4149 -6.5627 2.9957 41 1 0.8477 -10.2188 3.0849 42 1 3.2869 -5.4865 5.0094 43 1 3.3811 -3.8849 4.2386 44 1 0.8255 -4.5091 5.7963 45 1 2.6943 -2.0160 5.4377 46 1 1.0687 -2.0363 6.3084 47 1 1.9625 -3.7631 7.9374 48 1 3.5883 -3.7428 7.0670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:53 Heat of formation + Delta-G solvation = -47.451810 kcal Electronic energy + Delta-G solvation = -22872.295694 eV Core-core repulsion = 19733.829825 eV Total energy + Delta-G solvation = -3138.465869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.29660 -38.01713 -37.09412 -34.39438 -32.87592 -32.35611 -28.29254 -27.38658 -27.29352 -26.96370 -25.72647 -23.10876 -22.28251 -21.37815 -20.60809 -18.70183 -18.18895 -16.44817 -16.42254 -15.51849 -15.37975 -14.94112 -14.63362 -14.52020 -14.09152 -14.07022 -13.99450 -13.27834 -12.77421 -12.54618 -12.44007 -12.20610 -11.96780 -11.75500 -11.71423 -11.55127 -11.49245 -11.41533 -11.27963 -11.15532 -10.87337 -10.78835 -10.60831 -10.39755 -10.38421 -10.32045 -10.23207 -10.05239 -9.77695 -9.57715 -8.76313 -8.40556 -7.60854 -6.01269 -4.05693 3.31570 3.38144 3.42195 3.54041 3.84145 4.07409 4.47221 4.68445 4.77601 4.78619 4.92017 5.05303 5.07230 5.27570 5.31476 5.32940 5.36274 5.50288 5.52042 5.57511 5.59092 5.69637 5.73712 5.76080 5.79281 5.84268 5.89524 5.89638 5.94869 5.97666 6.01557 6.07172 6.12662 6.19316 6.23469 6.26735 6.33229 6.49190 6.53264 6.64572 7.13079 7.49488 7.61247 7.95830 8.27823 8.50683 8.94659 9.19166 9.59466 11.06811 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.004528 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.156069 B = 6182.571130 C = 7670.290817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.141 4.141 8 C 0.506 3.494 9 O -0.543 6.543 10 N -0.597 5.597 11 C 0.246 3.754 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.143 3.857 21 C -0.164 4.164 22 C -0.185 4.185 23 C -0.177 4.177 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.042 0.958 41 H 0.263 0.737 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 19.470 1.343 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.181 4.181 8 C 0.293 3.707 9 O -0.421 6.421 10 N -0.328 5.328 11 C 0.127 3.873 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.019 3.981 21 C -0.183 4.183 22 C -0.222 4.222 23 C -0.215 4.215 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.740 19.053 0.871 19.268 hybrid contribution 0.700 -0.726 -0.254 1.040 sum 3.440 18.326 0.617 18.656 Atomic orbital electron populations 1.21946 0.94697 1.02433 1.01161 1.20532 0.95741 0.94990 0.95695 1.21873 1.00776 0.95714 1.01383 1.21950 1.00789 1.01009 0.96546 1.21659 1.00300 0.95640 0.96916 1.21457 1.01615 0.93822 0.97518 1.21755 1.01721 0.94339 1.00332 1.20427 0.81017 0.87069 0.82207 1.90652 1.38612 1.77433 1.35420 1.48193 1.50046 1.13870 1.20725 1.19250 0.95976 0.74722 0.97397 1.21445 1.05924 0.92569 1.36401 0.92542 1.24930 0.95571 0.97968 0.95637 1.69935 1.24834 1.12917 1.45751 0.86515 0.81059 0.80117 0.79851 1.20670 1.21104 1.19917 1.20986 0.91672 0.99038 0.86421 1.22944 1.01827 0.96456 0.97111 1.23039 1.03005 0.92194 1.03950 1.22892 1.00560 1.04089 0.93934 0.92901 0.93130 0.91776 0.92858 0.92961 0.92870 0.91739 0.93130 0.92865 0.92184 0.92187 0.91051 0.91127 0.89587 0.90047 0.95129 0.93984 0.92777 0.89676 0.91460 0.87476 0.88890 0.89246 0.89058 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.12 37.16 0.30 -1.18 16 2 C -0.07 -0.70 0.80 -154.50 -0.12 -0.82 16 3 C -0.14 -1.20 8.47 37.16 0.31 -0.88 16 4 C -0.15 -1.53 8.12 37.16 0.30 -1.23 16 5 C -0.11 -1.16 4.27 -26.73 -0.11 -1.27 16 6 C -0.11 -1.49 3.80 -26.73 -0.10 -1.59 16 7 C -0.14 -2.11 4.25 -27.88 -0.12 -2.23 16 8 C 0.51 10.60 7.67 -10.98 -0.08 10.52 16 9 O -0.54 -13.84 15.56 5.56 0.09 -13.76 16 10 N -0.60 -12.70 2.46 -175.06 -0.43 -13.13 16 11 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 12 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 13 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 16 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.14 2.35 5.49 -4.04 -0.02 2.32 16 21 C -0.16 -2.31 5.95 -90.62 -0.54 -2.85 16 22 C -0.18 -2.05 9.18 -26.73 -0.25 -2.29 16 23 C -0.18 -2.00 10.25 -26.73 -0.27 -2.27 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.11 6.39 -51.93 -0.33 0.78 16 36 H 0.07 1.06 6.39 -51.93 -0.33 0.73 16 37 H 0.09 1.12 6.84 -51.93 -0.36 0.77 16 38 H 0.08 1.10 7.40 -51.93 -0.38 0.71 16 39 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 40 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 43 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 44 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 45 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 46 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.09 0.97 8.14 -51.94 -0.42 0.55 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.17 378.00 -9.15 -41.32 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -9.06 Total: -0.03 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.15 Total: -11.00 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.31 Total: -39.28 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.17 -9.15 -41.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.133 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds