Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 C 1.52999 * 109.47159 * 240.00288 * 2 1 3 5 5 C 1.53002 * 109.47197 * 119.99600 * 2 1 3 6 6 C 1.52996 * 109.46891 * 60.00410 * 5 2 1 7 7 C 1.52997 * 109.46947 * 179.97438 * 6 5 2 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46901 * 90.00358 * 16 14 12 18 18 H 1.48498 * 109.46773 * 209.99999 * 16 14 12 19 19 H 1.48494 * 109.46962 * 330.00109 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.09001 * 109.46812 * 299.99959 * 1 2 3 25 25 H 1.08992 * 109.47061 * 60.00326 * 1 2 3 26 26 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47261 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46866 * 299.99976 * 3 2 1 29 29 H 1.09001 * 109.47377 * 59.99827 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99545 * 4 2 1 31 31 H 1.09000 * 109.47486 * 59.99463 * 4 2 1 32 32 H 1.09001 * 109.47362 * 180.02562 * 4 2 1 33 33 H 1.08992 * 109.47056 * 300.00064 * 5 2 1 34 34 H 1.08996 * 109.46698 * 180.02562 * 5 2 1 35 35 H 1.09001 * 109.47372 * 59.99964 * 6 5 2 36 36 H 1.09004 * 109.47108 * 299.99708 * 6 5 2 37 37 H 1.09001 * 109.46832 * 59.99979 * 7 6 5 38 38 H 1.09000 * 109.47611 * 300.00276 * 7 6 5 39 39 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 40 40 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 41 41 H 0.97002 * 119.99965 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 43 43 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 44 44 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 45 45 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 46 46 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 47 47 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 48 48 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 6 1.5302 -2.1637 1.2493 7 6 2.0407 -2.8850 2.4982 8 6 1.5379 -4.3057 2.4986 9 8 0.8404 -4.7023 1.5892 10 7 1.8634 -5.1355 3.5095 11 6 1.3751 -6.5167 3.5095 12 6 2.3678 -7.4005 2.7993 13 1 3.2719 -6.9758 2.3886 14 6 2.1219 -8.7514 2.6738 15 7 1.0208 -9.2685 3.1735 16 14 3.3522 -9.8468 1.7929 17 1 4.3388 -10.3699 2.7716 18 1 2.6371 -10.9818 1.1561 19 1 4.0585 -9.0594 0.7507 20 6 2.7056 -4.6562 4.6083 21 6 1.8208 -4.0730 5.7119 22 6 1.9677 -2.5817 6.0209 23 6 2.5068 -3.6232 7.0035 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4427 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1301 -0.7216 -1.2491 33 1 1.6768 -0.2073 2.1392 34 1 3.1300 -0.7207 1.2494 35 1 1.8935 -2.6775 0.3593 36 1 0.4401 -2.1637 1.2493 37 1 1.6776 -2.3712 3.3884 38 1 3.1307 -2.8849 2.4979 39 1 1.2540 -6.8592 4.5373 40 1 0.4149 -6.5627 2.9957 41 1 0.8477 -10.2188 3.0849 42 1 3.2869 -5.4865 5.0094 43 1 3.3811 -3.8849 4.2386 44 1 0.8255 -4.5091 5.7963 45 1 2.6943 -2.0160 5.4377 46 1 1.0687 -2.0363 6.3084 47 1 1.9625 -3.7631 7.9374 48 1 3.5883 -3.7428 7.0670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = -64.524315 kcal Electronic energy + Delta-G solvation = -22873.036014 eV Core-core repulsion = 19733.829825 eV Total energy + Delta-G solvation = -3139.206188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85978 -38.92878 -38.30257 -36.14164 -34.62925 -33.88544 -30.09433 -28.30821 -28.11755 -28.03601 -27.30615 -24.92040 -23.18099 -22.68536 -21.78332 -19.88648 -19.42348 -18.61641 -17.87497 -17.17623 -16.79562 -16.24545 -15.93607 -15.68082 -15.39684 -15.02276 -14.88889 -14.61155 -14.31420 -14.19548 -13.70558 -13.45385 -13.24601 -13.15172 -12.88546 -12.70482 -12.57817 -12.51881 -12.47282 -12.42817 -12.37444 -12.24752 -12.21965 -11.75435 -11.68011 -11.33785 -11.25966 -11.24665 -11.19419 -10.85417 -10.65395 -10.44451 -9.42056 -8.23316 -6.38635 1.34665 1.38087 1.48452 1.89159 2.29672 2.45420 2.99335 3.05782 3.67101 3.85438 3.92591 3.97736 4.05087 4.06707 4.17212 4.24847 4.32843 4.34972 4.65028 4.69481 4.71057 4.75681 4.81769 4.85537 4.86696 4.90326 4.91566 4.98930 4.99914 5.06274 5.09546 5.13654 5.15291 5.22772 5.27590 5.28188 5.34624 5.35595 5.40386 5.52618 5.56445 5.60422 5.65362 5.86504 6.05941 6.69435 6.83600 7.27894 7.53357 8.83865 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.004528 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.156069 B = 6182.571130 C = 7670.290817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.135 4.135 4 C -0.146 4.146 5 C -0.099 4.099 6 C -0.102 4.102 7 C -0.125 4.125 8 C 0.493 3.507 9 O -0.602 6.602 10 N -0.602 5.602 11 C 0.263 3.737 12 C -0.543 4.543 13 H 0.053 0.947 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.273 1.273 20 C 0.143 3.857 21 C -0.195 4.195 22 C -0.162 4.162 23 C -0.163 4.163 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.018 0.982 40 H -0.007 1.007 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 22.058 2.109 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.193 4.193 4 C -0.203 4.203 5 C -0.136 4.136 6 C -0.140 4.140 7 C -0.164 4.164 8 C 0.283 3.717 9 O -0.484 6.484 10 N -0.332 5.332 11 C 0.141 3.859 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.197 1.197 20 C 0.021 3.979 21 C -0.215 4.215 22 C -0.198 4.198 23 C -0.200 4.200 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.036 0.964 40 H 0.011 0.989 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.134 0.866 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.243 21.676 1.680 22.364 hybrid contribution -0.140 -1.544 -0.469 1.619 sum 5.103 20.132 1.212 20.804 Atomic orbital electron populations 1.21944 0.95182 1.01150 1.01982 1.20554 0.95380 0.96115 0.95007 1.21821 1.01184 0.94147 1.02101 1.21952 1.01148 0.99775 0.97469 1.21612 1.01026 0.93010 0.97984 1.21403 1.00508 0.95961 0.96091 1.21759 1.03020 0.89687 1.01931 1.21616 0.79960 0.89276 0.80873 1.90618 1.41225 1.78950 1.37598 1.48209 1.50436 1.12022 1.22521 1.18657 0.93726 0.77972 0.95503 1.21714 1.06116 0.93435 1.36865 0.92866 1.25890 0.97573 0.99537 0.96231 1.70062 1.26653 1.13498 1.46726 0.85396 0.78673 0.77855 0.78779 1.18646 1.20592 1.19731 1.21215 0.91687 0.99458 0.85587 1.22647 1.00533 0.99556 0.98751 1.23186 1.03712 0.90175 1.02774 1.23011 1.01288 1.02791 0.92922 0.91999 0.92423 0.94099 0.92157 0.92516 0.91962 0.94168 0.92384 0.92239 0.90447 0.90805 0.93406 0.93017 0.86790 0.87391 0.96446 0.98928 0.92417 0.91177 0.87980 0.90521 0.86588 0.88277 0.88368 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.12 71.98 0.58 -2.25 16 2 C -0.07 -1.28 0.80 -52.18 -0.04 -1.32 16 3 C -0.14 -1.87 8.47 71.98 0.61 -1.26 16 4 C -0.15 -2.95 8.12 71.98 0.58 -2.37 16 5 C -0.10 -1.85 4.27 30.59 0.13 -1.72 16 6 C -0.10 -2.79 3.80 30.59 0.12 -2.67 16 7 C -0.12 -3.50 4.25 29.85 0.13 -3.38 16 8 C 0.49 21.26 7.67 87.66 0.67 21.94 16 9 O -0.60 -32.65 15.56 -3.02 -0.05 -32.69 16 10 N -0.60 -26.48 2.46 -826.16 -2.03 -28.51 16 11 C 0.26 14.81 5.16 85.63 0.44 15.25 16 12 C -0.54 -32.30 9.39 25.60 0.24 -32.06 16 13 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 14 C 0.01 0.38 5.46 84.66 0.46 0.84 16 15 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 16 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 20 C 0.14 4.58 5.49 86.38 0.47 5.06 16 21 C -0.20 -5.31 5.95 -10.79 -0.06 -5.37 16 22 C -0.16 -2.98 9.18 30.59 0.28 -2.70 16 23 C -0.16 -3.21 10.25 30.59 0.31 -2.90 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.98 6.43 -2.39 -0.02 0.96 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.99 6.43 -2.39 -0.02 0.98 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.53 6.39 -2.39 -0.02 1.52 16 36 H 0.05 1.60 6.39 -2.38 -0.02 1.59 16 37 H 0.11 2.59 6.84 -2.39 -0.02 2.58 16 38 H 0.11 2.52 7.40 -2.39 -0.02 2.50 16 39 H 0.02 1.01 8.07 -2.38 -0.02 0.99 16 40 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 43 H 0.10 2.51 6.17 -2.39 -0.01 2.50 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.12 1.65 7.87 -2.39 -0.02 1.63 16 46 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.31 378.00 6.06 -69.26 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.89 Total: 16.41 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.93 Total: -14.90 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.74 Total: -85.97 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.05 Total: -32.69 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -75.31 6.06 -69.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.732 kcal (2) G-P(sol) polarization free energy of solvation -75.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds