Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47341 * 2 1 4 4 C 1.52998 * 109.47007 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46682 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47138 * 180.02562 * 5 4 3 7 7 C 1.52990 * 109.47406 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47478 * 179.97438 * 7 6 5 9 9 O 1.21291 * 119.99787 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00151 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99768 * 180.27805 * 10 8 7 12 12 H 1.08004 * 120.00002 * 222.79171 * 11 10 8 13 13 C 1.38946 * 120.00219 * 42.78583 * 11 10 8 14 14 N 1.31414 * 120.00245 * 19.10548 * 13 11 10 15 15 Si 1.86810 * 120.00056 * 199.10551 * 13 11 10 16 16 H 1.48493 * 109.46979 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46922 * 120.00168 * 15 13 11 18 18 H 1.48503 * 109.46892 * 240.00118 * 15 13 11 19 19 C 1.46493 * 120.00059 * 0.02562 * 10 8 7 20 20 C 1.54269 * 110.03356 * 239.87882 * 19 10 8 21 21 C 1.54969 * 104.15869 * 217.13793 * 20 19 10 22 22 C 1.54886 * 102.77790 * 37.88802 * 21 20 19 23 23 C 1.53877 * 110.03408 * 122.66325 * 19 10 8 24 24 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47161 * 299.99997 * 1 2 3 26 26 H 1.09004 * 109.47082 * 59.99677 * 1 2 3 27 27 H 1.09006 * 109.46982 * 240.00116 * 2 1 3 28 28 H 1.09004 * 109.47082 * 120.00323 * 2 1 3 29 29 H 1.09003 * 109.46639 * 60.00502 * 3 2 1 30 30 H 1.08996 * 109.47036 * 299.99971 * 3 2 1 31 31 H 1.08996 * 109.47234 * 60.00163 * 4 3 2 32 32 H 1.08996 * 109.47293 * 299.99928 * 4 3 2 33 33 H 1.08996 * 109.47500 * 59.99901 * 5 4 3 34 34 H 1.09004 * 109.47111 * 299.99994 * 5 4 3 35 35 H 1.09006 * 109.46961 * 59.99629 * 6 5 4 36 36 H 1.09004 * 109.46981 * 299.99910 * 6 5 4 37 37 H 1.08996 * 109.47153 * 59.99786 * 7 6 5 38 38 H 1.09004 * 109.47191 * 300.00043 * 7 6 5 39 39 H 0.96997 * 119.99783 * 174.75774 * 14 13 11 40 40 H 1.08998 * 110.02036 * 1.26876 * 19 10 8 41 41 H 1.09001 * 110.48477 * 335.78721 * 20 19 10 42 42 H 1.09001 * 110.48749 * 98.42789 * 20 19 10 43 43 H 1.08994 * 110.71806 * 279.57180 * 21 20 19 44 44 H 1.09001 * 110.91841 * 156.29793 * 21 20 19 45 45 H 1.09003 * 110.48594 * 203.40056 * 22 21 20 46 46 H 1.09003 * 110.59936 * 80.81986 * 22 21 20 47 47 H 1.08997 * 110.03184 * 238.57033 * 23 19 10 48 48 H 1.08999 * 110.02917 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3274 0.0013 8 6 7.6270 4.3274 0.0019 9 8 8.2335 3.2770 0.0019 10 7 8.3009 5.4946 0.0015 11 6 9.6718 5.4946 -0.0037 12 1 10.2143 6.1798 0.6310 13 6 10.3635 4.6130 -0.8252 14 7 9.7569 4.0556 -1.8492 15 14 12.1557 4.2199 -0.4744 16 1 12.6012 4.9710 0.7267 17 1 12.3042 2.7628 -0.2297 18 1 12.9863 4.6131 -1.6409 19 6 7.5684 6.7633 0.0010 20 6 7.9341 7.5842 -1.2529 21 6 7.9625 9.0501 -0.7513 22 6 8.5832 8.9169 0.6615 23 6 7.9805 7.6104 1.2178 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 3.7163 3.3985 0.8912 34 1 3.7170 3.3990 -0.8887 35 1 5.9733 2.3715 -0.8889 36 1 5.9733 2.3707 0.8911 37 1 5.7567 4.8412 0.8912 38 1 5.7567 4.8412 -0.8887 39 1 10.2584 3.5005 -2.4665 40 1 6.4952 6.5745 0.0237 41 1 8.9143 7.2906 -1.6285 42 1 7.1754 7.4591 -2.0254 43 1 6.9531 9.4573 -0.6929 44 1 8.5905 9.6688 -1.3924 45 1 8.2981 9.7643 1.2849 46 1 9.6686 8.8395 0.5977 47 1 7.1071 7.8333 1.8305 48 1 8.7252 7.0773 1.8088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112969337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -74.769307 kcal Electronic energy + Delta-G solvation = -22758.031527 eV Core-core repulsion = 19618.381082 eV Total energy + Delta-G solvation = -3139.650445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.81182 -36.93424 -36.30828 -33.97560 -33.05263 -31.54381 -30.25084 -28.01436 -26.89667 -26.66509 -24.48314 -22.55253 -20.98896 -20.63667 -20.04557 -19.70102 -18.73376 -16.21390 -15.96582 -15.82928 -14.93408 -14.84083 -14.47918 -14.16234 -13.91843 -13.60765 -13.56953 -13.19257 -12.72792 -12.53392 -12.42941 -11.96931 -11.74849 -11.71915 -11.27003 -11.06980 -11.01748 -10.95497 -10.76453 -10.65032 -10.61129 -10.54416 -10.45905 -10.43538 -10.37397 -10.17042 -10.09952 -10.01696 -9.97380 -9.67435 -8.63489 -7.86796 -6.93974 -6.00318 -3.71610 3.34630 3.44864 3.46613 4.30681 4.50524 4.68084 4.85452 5.00662 5.04693 5.21734 5.23678 5.29645 5.36221 5.41207 5.48281 5.56050 5.57155 5.68749 5.75021 5.84203 5.88981 5.94243 5.98234 6.03918 6.10305 6.11529 6.13261 6.18888 6.22078 6.27911 6.32260 6.33889 6.38415 6.43656 6.45850 6.49544 6.59479 6.67273 6.83082 6.87497 6.96738 7.03023 7.27207 7.74772 8.40849 9.20773 9.33577 9.82816 10.47759 11.09332 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.003925 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.838606 B = 7132.682090 C = 8452.107602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.098 4.098 7 C -0.133 4.133 8 C 0.475 3.525 9 O -0.537 6.537 10 N -0.453 5.453 11 C -0.340 4.340 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.833 5.833 15 Si 0.906 3.094 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.288 1.288 19 C 0.130 3.870 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.260 0.740 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 2.059 2.780 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.136 4.136 7 C -0.174 4.174 8 C 0.262 3.738 9 O -0.415 6.415 10 N -0.175 5.175 11 C -0.467 4.467 12 H 0.093 0.907 13 C -0.138 4.138 14 N -0.467 5.467 15 Si 0.733 3.267 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.214 1.214 19 C 0.025 3.975 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.169 4.169 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.940 1.315 2.669 13.278 hybrid contribution 0.832 -0.079 -0.042 0.836 sum -12.109 1.236 2.627 12.452 Atomic orbital electron populations 1.21781 0.96216 1.01306 1.01672 1.21557 0.95510 0.97373 1.01990 1.21637 0.95994 0.96301 1.01789 1.21605 0.94574 0.97451 1.02138 1.21635 0.96457 0.96137 1.01373 1.21251 0.92977 0.96237 1.03086 1.21610 0.96380 0.97861 1.01540 1.19940 0.87732 0.84711 0.81427 1.90506 1.69612 1.30828 1.50593 1.43429 1.05275 1.01869 1.66927 1.18826 0.80119 1.23368 1.24434 0.90657 1.25186 0.98294 0.96388 0.93901 1.69843 1.36187 1.29581 1.11110 0.86258 0.83799 0.78621 0.77981 1.19731 1.20864 1.21434 1.21669 0.95117 0.86974 0.93752 1.22662 1.03377 0.93035 0.97278 1.22449 0.99563 0.97481 0.96561 1.22254 1.00514 0.96738 0.95960 1.22455 1.00217 0.95985 0.98279 0.93032 0.92877 0.92859 0.92101 0.92135 0.92242 0.92194 0.92036 0.92121 0.92512 0.92426 0.91548 0.91929 0.91436 0.91208 0.92965 0.91530 0.89170 0.93114 0.92581 0.92419 0.92995 0.91642 0.93037 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.87 16 2 C -0.13 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.12 -1.23 5.21 -26.73 -0.14 -1.37 16 4 C -0.12 -1.48 5.21 -26.73 -0.14 -1.62 16 5 C -0.12 -1.63 5.21 -26.73 -0.14 -1.77 16 6 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 7 C -0.13 -2.60 4.01 -27.89 -0.11 -2.71 16 8 C 0.47 12.11 6.97 -10.99 -0.08 12.03 16 9 O -0.54 -16.02 13.64 5.55 0.08 -15.94 16 10 N -0.45 -11.20 2.46 -106.55 -0.26 -11.47 16 11 C -0.34 -9.24 7.46 -14.93 -0.11 -9.35 16 12 H 0.08 2.00 7.08 -52.48 -0.37 1.63 16 13 C 0.07 2.04 4.35 -17.47 -0.08 1.97 16 14 N -0.83 -24.83 11.67 55.50 0.65 -24.18 16 15 Si 0.91 22.25 29.60 -169.99 -5.03 17.22 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.13 2.57 3.20 -66.81 -0.21 2.36 16 20 C -0.13 -2.37 6.42 -25.03 -0.16 -2.53 16 21 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 22 C -0.12 -1.81 6.83 -25.08 -0.17 -1.98 16 23 C -0.13 -2.28 6.19 -25.61 -0.16 -2.44 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 38 H 0.07 1.30 7.82 -51.93 -0.41 0.89 16 39 H 0.26 7.48 8.32 -40.82 -0.34 7.14 16 40 H 0.07 1.20 5.83 -51.93 -0.30 0.90 16 41 H 0.09 2.04 7.10 -51.93 -0.37 1.67 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 1.47 6.85 -51.93 -0.36 1.12 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -31.53 372.40 -9.91 -41.44 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -9.37 Total: 0.86 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.58 Total: -13.54 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.39 Total: -35.65 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.08 Total: -15.94 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.53 -9.91 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112969337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.332 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds