Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47341 * 2 1 4 4 C 1.52998 * 109.47007 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46682 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47138 * 180.02562 * 5 4 3 7 7 C 1.52990 * 109.47406 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47478 * 179.97438 * 7 6 5 9 9 O 1.21291 * 119.99787 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00151 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99768 * 180.27805 * 10 8 7 12 12 H 1.08004 * 120.00002 * 222.79171 * 11 10 8 13 13 C 1.38946 * 120.00219 * 42.78583 * 11 10 8 14 14 N 1.31414 * 120.00245 * 19.10548 * 13 11 10 15 15 Si 1.86810 * 120.00056 * 199.10551 * 13 11 10 16 16 H 1.48493 * 109.46979 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46922 * 120.00168 * 15 13 11 18 18 H 1.48503 * 109.46892 * 240.00118 * 15 13 11 19 19 C 1.46493 * 120.00059 * 0.02562 * 10 8 7 20 20 C 1.54269 * 110.03356 * 239.87882 * 19 10 8 21 21 C 1.54969 * 104.15869 * 217.13793 * 20 19 10 22 22 C 1.54886 * 102.77790 * 37.88802 * 21 20 19 23 23 C 1.53877 * 110.03408 * 122.66325 * 19 10 8 24 24 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47161 * 299.99997 * 1 2 3 26 26 H 1.09004 * 109.47082 * 59.99677 * 1 2 3 27 27 H 1.09006 * 109.46982 * 240.00116 * 2 1 3 28 28 H 1.09004 * 109.47082 * 120.00323 * 2 1 3 29 29 H 1.09003 * 109.46639 * 60.00502 * 3 2 1 30 30 H 1.08996 * 109.47036 * 299.99971 * 3 2 1 31 31 H 1.08996 * 109.47234 * 60.00163 * 4 3 2 32 32 H 1.08996 * 109.47293 * 299.99928 * 4 3 2 33 33 H 1.08996 * 109.47500 * 59.99901 * 5 4 3 34 34 H 1.09004 * 109.47111 * 299.99994 * 5 4 3 35 35 H 1.09006 * 109.46961 * 59.99629 * 6 5 4 36 36 H 1.09004 * 109.46981 * 299.99910 * 6 5 4 37 37 H 1.08996 * 109.47153 * 59.99786 * 7 6 5 38 38 H 1.09004 * 109.47191 * 300.00043 * 7 6 5 39 39 H 0.96997 * 119.99783 * 174.75774 * 14 13 11 40 40 H 1.08998 * 110.02036 * 1.26876 * 19 10 8 41 41 H 1.09001 * 110.48477 * 335.78721 * 20 19 10 42 42 H 1.09001 * 110.48749 * 98.42789 * 20 19 10 43 43 H 1.08994 * 110.71806 * 279.57180 * 21 20 19 44 44 H 1.09001 * 110.91841 * 156.29793 * 21 20 19 45 45 H 1.09003 * 110.48594 * 203.40056 * 22 21 20 46 46 H 1.09003 * 110.59936 * 80.81986 * 22 21 20 47 47 H 1.08997 * 110.03184 * 238.57033 * 23 19 10 48 48 H 1.08999 * 110.02917 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3274 0.0013 8 6 7.6270 4.3274 0.0019 9 8 8.2335 3.2770 0.0019 10 7 8.3009 5.4946 0.0015 11 6 9.6718 5.4946 -0.0037 12 1 10.2143 6.1798 0.6310 13 6 10.3635 4.6130 -0.8252 14 7 9.7569 4.0556 -1.8492 15 14 12.1557 4.2199 -0.4744 16 1 12.6012 4.9710 0.7267 17 1 12.3042 2.7628 -0.2297 18 1 12.9863 4.6131 -1.6409 19 6 7.5684 6.7633 0.0010 20 6 7.9341 7.5842 -1.2529 21 6 7.9625 9.0501 -0.7513 22 6 8.5832 8.9169 0.6615 23 6 7.9805 7.6104 1.2178 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 3.7163 3.3985 0.8912 34 1 3.7170 3.3990 -0.8887 35 1 5.9733 2.3715 -0.8889 36 1 5.9733 2.3707 0.8911 37 1 5.7567 4.8412 0.8912 38 1 5.7567 4.8412 -0.8887 39 1 10.2584 3.5005 -2.4665 40 1 6.4952 6.5745 0.0237 41 1 8.9143 7.2906 -1.6285 42 1 7.1754 7.4591 -2.0254 43 1 6.9531 9.4573 -0.6929 44 1 8.5905 9.6688 -1.3924 45 1 8.2981 9.7643 1.2849 46 1 9.6686 8.8395 0.5977 47 1 7.1071 7.8333 1.8305 48 1 8.7252 7.0773 1.8088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112969337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = -90.524905 kcal Electronic energy + Delta-G solvation = -22758.714741 eV Core-core repulsion = 19618.381082 eV Total energy + Delta-G solvation = -3140.333659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59205 -38.43773 -37.45008 -35.38076 -34.75040 -33.45586 -31.50407 -29.41110 -28.46739 -27.99408 -26.17529 -23.84225 -21.87971 -21.86053 -21.36088 -21.29401 -20.55194 -18.11248 -17.57895 -17.01797 -16.71648 -16.21903 -16.01011 -15.76894 -15.15733 -14.93682 -14.77223 -14.49124 -14.14541 -13.89327 -13.86537 -13.35415 -13.04519 -12.90521 -12.85534 -12.80685 -12.46503 -12.43114 -12.22465 -12.07062 -12.03454 -11.89033 -11.80975 -11.75484 -11.72845 -11.45491 -11.34195 -11.30161 -11.27519 -11.19988 -10.70273 -9.89415 -8.96740 -8.14742 -5.87153 1.33983 1.42067 1.48980 2.30851 2.56277 3.21758 3.29545 3.80444 3.92140 3.97157 4.02493 4.06708 4.21008 4.21860 4.30226 4.39599 4.48637 4.58190 4.61092 4.70824 4.73095 4.80036 4.81821 4.86338 4.88427 4.94544 4.97409 5.02592 5.03537 5.08797 5.15353 5.19071 5.22445 5.24781 5.31994 5.35448 5.36589 5.47125 5.49574 5.54034 5.58372 5.60203 5.61871 5.71512 6.29546 7.12693 7.33040 7.82597 8.48895 8.95240 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.003925 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.838606 B = 7132.682090 C = 8452.107602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.114 4.114 4 C -0.120 4.120 5 C -0.107 4.107 6 C -0.090 4.090 7 C -0.121 4.121 8 C 0.454 3.546 9 O -0.594 6.594 10 N -0.464 5.464 11 C -0.341 4.341 12 H 0.075 0.925 13 C 0.019 3.981 14 N -0.871 5.871 15 Si 0.960 3.040 16 H -0.259 1.259 17 H -0.299 1.299 18 H -0.275 1.275 19 C 0.120 3.880 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.127 4.127 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.084 0.916 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.508 4.247 3.816 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.151 4.151 4 C -0.157 4.157 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.161 4.161 8 C 0.243 3.757 9 O -0.476 6.476 10 N -0.185 5.185 11 C -0.469 4.469 12 H 0.093 0.907 13 C -0.186 4.186 14 N -0.507 5.507 15 Si 0.787 3.213 16 H -0.182 1.182 17 H -0.226 1.226 18 H -0.201 1.201 19 C 0.016 3.984 20 C -0.164 4.164 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.102 0.898 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.192 3.565 3.716 16.041 hybrid contribution 1.518 -0.727 -0.324 1.714 sum -13.674 2.837 3.392 14.372 Atomic orbital electron populations 1.21764 0.95034 1.01916 1.02068 1.21564 0.96557 0.96748 1.01749 1.21582 0.94034 0.97062 1.02432 1.21587 0.96301 0.96423 1.01424 1.21547 0.92716 0.97385 1.02760 1.21175 0.96179 0.94845 1.00660 1.21554 0.91805 0.99252 1.03485 1.21032 0.90313 0.84121 0.80226 1.90464 1.71372 1.32800 1.52973 1.43711 1.04962 1.03759 1.66073 1.19022 0.81819 1.22606 1.23439 0.90719 1.25957 1.02050 0.96650 0.93958 1.69956 1.37469 1.30975 1.12272 0.85396 0.79987 0.77279 0.78676 1.18233 1.22591 1.20117 1.22035 0.95925 0.85105 0.95364 1.22588 1.00855 0.95878 0.97102 1.22412 1.01591 0.94691 0.96034 1.22248 0.99344 0.96855 0.96683 1.22420 1.00839 0.96104 0.97167 0.92390 0.92363 0.92562 0.92568 0.92274 0.91328 0.91729 0.93193 0.92581 0.90551 0.91405 0.94846 0.93662 0.88303 0.89870 0.93668 0.89147 0.93743 0.92563 0.89466 0.91465 0.89574 0.93533 0.89764 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.13 -2.22 5.93 30.59 0.18 -2.04 16 3 C -0.11 -2.11 5.21 30.59 0.16 -1.95 16 4 C -0.12 -2.84 5.21 30.59 0.16 -2.68 16 5 C -0.11 -2.74 5.21 30.60 0.16 -2.58 16 6 C -0.09 -3.28 4.50 30.59 0.14 -3.14 16 7 C -0.12 -4.60 4.01 29.84 0.12 -4.48 16 8 C 0.45 23.63 6.97 87.66 0.61 24.24 16 9 O -0.59 -37.02 13.64 -3.06 -0.04 -37.06 16 10 N -0.46 -23.24 2.46 -609.39 -1.50 -24.74 16 11 C -0.34 -19.00 7.46 84.04 0.63 -18.38 16 12 H 0.08 4.07 7.08 -2.91 -0.02 4.05 16 13 C 0.02 1.13 4.35 84.93 0.37 1.50 16 14 N -0.87 -54.26 11.67 21.66 0.25 -54.01 16 15 Si 0.96 47.21 29.60 68.60 2.03 49.24 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 17 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 C 0.12 4.55 3.20 45.72 0.15 4.70 16 20 C -0.13 -4.63 6.42 31.70 0.20 -4.42 16 21 C -0.11 -2.97 6.91 31.91 0.22 -2.75 16 22 C -0.11 -3.18 6.83 31.67 0.22 -2.96 16 23 C -0.13 -4.12 6.19 31.32 0.19 -3.93 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.03 1.40 8.10 -2.38 -0.02 1.38 16 36 H 0.04 1.76 8.10 -2.38 -0.02 1.74 16 37 H 0.10 3.13 7.77 -2.39 -0.02 3.12 16 38 H 0.08 2.95 7.82 -2.38 -0.02 2.93 16 39 H 0.25 15.38 8.32 -92.71 -0.77 14.61 16 40 H 0.09 2.98 5.83 -2.39 -0.01 2.96 16 41 H 0.04 2.04 7.10 -2.39 -0.02 2.03 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 47 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.04 1.75 6.85 -2.39 -0.02 1.73 16 Total: -1.00 -72.83 372.40 5.84 -66.99 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.88 Total: 19.87 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.22 Total: -20.29 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -1.25 Total: -78.75 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.04 Total: -37.06 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -72.83 5.84 -66.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112969337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.537 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds