Wall clock time and date at job start Tue Mar 31 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 C 1.53003 * 109.46928 * 64.99996 * 3 2 1 5 5 C 1.52999 * 109.47269 * 186.04479 * 4 3 2 6 6 C 1.53002 * 109.47103 * 184.99943 * 3 2 1 7 7 N 1.46501 * 109.46719 * 63.34206 * 6 3 2 8 8 C 1.46494 * 120.00075 * 84.05411 * 7 6 3 9 9 C 1.50697 * 109.47497 * 94.82709 * 8 7 6 10 10 H 1.07996 * 120.00006 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00327 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99537 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00148 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47182 * 60.00069 * 13 11 9 15 15 H 1.48501 * 109.47505 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47536 * 300.00435 * 13 11 9 17 17 C 1.34777 * 119.99670 * 263.77082 * 7 6 3 18 18 O 1.21281 * 120.00267 * 0.02562 * 17 7 6 19 19 C 1.50695 * 119.99722 * 180.02562 * 17 7 6 20 20 C 1.53002 * 109.47153 * 180.02562 * 19 17 7 21 21 C 1.53004 * 109.47142 * 179.97438 * 20 19 17 22 22 C 1.53001 * 117.50155 * 243.74413 * 21 20 19 23 23 C 1.52999 * 117.49432 * 175.08703 * 21 20 19 24 24 H 1.09002 * 109.46588 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47393 * 299.99393 * 1 2 3 26 26 H 1.09000 * 109.47011 * 60.00058 * 1 2 3 27 27 H 1.08999 * 109.46876 * 240.00508 * 2 1 3 28 28 H 1.08995 * 109.47252 * 120.00335 * 2 1 3 29 29 H 1.08997 * 109.47313 * 305.00592 * 3 2 1 30 30 H 1.08996 * 109.47221 * 306.04756 * 4 3 2 31 31 H 1.09003 * 109.46950 * 66.04649 * 4 3 2 32 32 H 1.09004 * 109.46915 * 303.99470 * 5 4 3 33 33 H 1.08996 * 109.46966 * 63.99192 * 5 4 3 34 34 H 1.08995 * 109.47098 * 183.99599 * 5 4 3 35 35 H 1.08991 * 109.46940 * 303.33797 * 6 3 2 36 36 H 1.08998 * 109.46813 * 183.33892 * 6 3 2 37 37 H 1.09006 * 109.47180 * 214.82759 * 8 7 6 38 38 H 1.09001 * 109.47488 * 334.82251 * 8 7 6 39 39 H 0.97009 * 119.99319 * 179.97438 * 12 11 9 40 40 H 1.08999 * 109.47752 * 300.00169 * 19 17 7 41 41 H 1.08999 * 109.47697 * 60.00430 * 19 17 7 42 42 H 1.08995 * 109.46973 * 300.00110 * 20 19 17 43 43 H 1.09003 * 109.46684 * 60.00334 * 20 19 17 44 44 H 1.09001 * 115.54439 * 29.42507 * 21 20 19 45 45 H 1.08995 * 117.49468 * 0.02562 * 22 21 20 46 46 H 1.09000 * 117.49474 * 145.02261 * 22 21 20 47 47 H 1.09001 * 117.49616 * 214.98468 * 23 21 20 48 48 H 1.09003 * 117.50363 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0117 3.6082 1.2457 6 6 3.5648 1.4444 -0.1257 7 7 3.9493 0.8614 -1.4136 8 6 3.9696 1.6949 -2.6181 9 6 5.3643 2.2194 -2.8427 10 1 6.1564 1.9583 -2.1566 11 6 5.6293 3.0326 -3.9242 12 7 4.6649 3.3501 -4.7600 13 14 7.3581 3.6833 -4.2022 14 1 8.2946 2.5434 -4.3724 15 1 7.3790 4.5271 -5.4239 16 1 7.7754 4.4960 -3.0314 17 6 4.2898 -0.4405 -1.4891 18 8 4.2775 -1.1294 -0.4910 19 6 4.6858 -1.0400 -2.8137 20 6 5.0212 -2.5207 -2.6235 21 6 5.4227 -3.1296 -3.9685 22 6 4.5299 -4.2334 -4.5390 23 6 5.9080 -4.5806 -3.9703 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6053 1.9816 -0.8417 30 1 0.5587 2.0308 1.4494 31 1 2.1550 1.6539 2.1408 32 1 3.0765 3.7039 1.0331 33 1 1.4385 4.0962 0.4574 34 1 1.7884 4.0799 2.2026 35 1 3.9968 0.8554 0.6833 36 1 3.9330 2.4686 -0.0661 37 1 3.6627 1.0989 -3.4776 38 1 3.2825 2.5318 -2.4925 39 1 4.8512 3.9225 -5.5207 40 1 3.8598 -0.9426 -3.5182 41 1 5.5590 -0.5165 -3.2031 42 1 5.8471 -2.6185 -1.9189 43 1 4.1477 -3.0439 -2.2344 44 1 5.8876 -2.4424 -4.6755 45 1 3.6563 -4.5254 -3.9562 46 1 4.4077 -4.2726 -5.6214 47 1 6.6919 -4.8482 -4.6788 48 1 5.9408 -5.1015 -3.0133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115371266.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:14 Heat of formation + Delta-G solvation = -53.108690 kcal Electronic energy + Delta-G solvation = -23284.637890 eV Core-core repulsion = 20145.926720 eV Total energy + Delta-G solvation = -3138.711170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.38377 -37.46245 -36.62701 -34.52414 -32.43828 -31.66508 -31.49848 -28.38449 -26.80231 -24.98683 -23.35425 -22.68175 -22.34990 -22.23073 -20.12059 -19.42397 -18.16083 -16.60523 -16.17329 -15.60949 -15.34493 -14.87208 -14.44029 -14.31985 -14.05351 -14.00166 -13.51569 -13.47921 -12.69074 -12.46419 -12.42144 -12.14425 -11.72813 -11.68653 -11.54867 -11.44348 -11.34504 -11.24598 -10.94564 -10.90663 -10.89574 -10.71873 -10.68742 -10.31207 -10.18246 -10.09615 -10.02248 -9.97411 -9.67714 -9.60175 -8.90175 -8.54198 -7.61026 -6.17665 -4.25055 3.23785 3.28975 3.31391 3.53624 3.92777 4.05732 4.34101 4.89221 5.09503 5.10509 5.11709 5.15086 5.17109 5.27598 5.45052 5.51665 5.60284 5.67743 5.70162 5.73182 5.82453 5.91416 5.93065 5.97138 6.04500 6.09735 6.11888 6.17395 6.21067 6.23173 6.26372 6.37608 6.43059 6.44251 6.46164 6.59476 6.62819 6.70022 6.74704 6.84580 6.89260 7.22363 7.60706 7.78400 8.08235 8.41741 8.81602 9.12747 9.43100 10.88674 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.008550 B = 0.007324 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.070672 B = 3822.074376 C = 6445.127630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.102 4.102 4 C -0.115 4.115 5 C -0.155 4.155 6 C 0.121 3.879 7 N -0.595 5.595 8 C 0.240 3.760 9 C -0.537 4.537 10 H 0.059 0.941 11 C 0.066 3.934 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.517 3.483 18 O -0.578 6.578 19 C -0.132 4.132 20 C -0.070 4.070 21 C -0.148 4.148 22 C -0.183 4.183 23 C -0.185 4.185 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.265 0.735 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 -6.891 4.672 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.122 4.122 4 C -0.153 4.153 5 C -0.213 4.213 6 C -0.002 4.002 7 N -0.324 5.324 8 C 0.120 3.880 9 C -0.576 4.576 10 H 0.078 0.922 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.306 3.694 18 O -0.459 6.459 19 C -0.172 4.172 20 C -0.108 4.108 21 C -0.166 4.166 22 C -0.220 4.220 23 C -0.222 4.222 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.425 -7.104 4.994 9.746 hybrid contribution 0.952 0.645 -0.478 1.246 sum -3.473 -6.459 4.516 8.612 Atomic orbital electron populations 1.21840 0.96861 1.00820 1.01317 1.21459 0.94469 0.96351 1.02465 1.21587 0.96674 0.96145 0.97757 1.21545 1.00816 0.95528 0.97443 1.21846 1.02282 0.96153 1.00981 1.21392 0.93299 0.98865 0.86684 1.48201 1.64588 1.09430 1.10223 1.19363 0.97340 0.90160 0.81164 1.21474 0.95056 1.30649 1.10429 0.92229 1.24929 0.97279 0.95871 0.95641 1.69918 1.32028 1.36378 1.14585 0.86609 0.84497 0.79061 0.77627 1.20073 1.21164 1.20174 1.20503 0.76217 0.81982 0.90660 1.90573 1.55998 1.61157 1.38222 1.21591 1.04186 0.95515 0.95900 1.20904 1.01455 0.94373 0.94032 1.22424 1.03452 0.91089 0.99610 1.23019 0.94214 1.04290 1.00498 1.22942 0.97557 0.99077 1.02623 0.93440 0.92965 0.93079 0.91965 0.92171 0.91056 0.92032 0.92273 0.92090 0.92755 0.93355 0.90945 0.90765 0.94622 0.94701 0.92513 0.89554 0.87824 0.91346 0.91818 0.87552 0.88988 0.89182 0.89202 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 37.16 0.36 -1.64 16 2 C -0.11 -1.74 4.60 -26.73 -0.12 -1.86 16 3 C -0.10 -1.62 2.06 -90.62 -0.19 -1.81 16 4 C -0.12 -1.53 5.28 -26.73 -0.14 -1.67 16 5 C -0.16 -1.99 9.77 37.16 0.36 -1.63 16 6 C 0.12 2.23 4.80 -4.04 -0.02 2.22 16 7 N -0.59 -12.32 2.21 -175.07 -0.39 -12.71 16 8 C 0.24 5.60 4.95 -5.20 -0.03 5.57 16 9 C -0.54 -13.77 8.79 -34.44 -0.30 -14.08 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16 13 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.52 10.62 6.19 -10.99 -0.07 10.55 16 18 O -0.58 -12.61 14.52 5.56 0.08 -12.53 16 19 C -0.13 -2.43 4.26 -27.88 -0.12 -2.55 16 20 C -0.07 -1.12 4.79 -26.73 -0.13 -1.25 16 21 C -0.15 -2.06 5.73 -90.62 -0.52 -2.58 16 22 C -0.18 -2.24 10.18 -26.69 -0.27 -2.51 16 23 C -0.18 -2.22 10.25 -26.70 -0.27 -2.49 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.13 6.15 -51.93 -0.32 0.81 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.75 6.30 -51.93 -0.33 0.42 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.84 6.36 -51.93 -0.33 0.51 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.38 7.24 -51.93 -0.38 1.00 16 36 H 0.07 1.38 6.35 -51.93 -0.33 1.05 16 37 H 0.04 0.86 6.65 -51.93 -0.35 0.52 16 38 H 0.03 0.86 8.04 -51.93 -0.42 0.44 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 41 H 0.10 2.04 7.58 -51.93 -0.39 1.65 16 42 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.06 1.03 7.83 -51.93 -0.41 0.63 16 44 H 0.11 1.51 8.08 -51.93 -0.42 1.09 16 45 H 0.09 1.09 8.03 -51.93 -0.42 0.68 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -27.17 375.78 -9.48 -36.65 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -9.00 Total: 5.16 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -1.55 Total: -14.09 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.35 Total: -36.25 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.17 -9.48 -36.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115371266.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.460 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds