Wall clock time and date at job start Tue Mar 31 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.47032 * 111.00067 * 66.04548 * 12 11 10 14 14 C 1.53114 * 109.18595 * 177.44134 * 13 12 11 15 15 O 1.42999 * 109.21295 * 57.04842 * 14 13 12 16 16 C 1.43033 * 113.79213 * 301.32100 * 15 14 13 17 17 C 1.47011 * 111.00013 * 302.45711 * 12 11 10 18 18 C 1.50467 * 110.78185 * 296.10826 * 16 15 14 19 19 C 1.54074 * 112.43778 * 335.05009 * 18 16 15 20 20 C 1.54081 * 112.79865 * 318.30734 * 19 18 16 21 21 C 1.50469 * 112.53155 * 318.26787 * 20 19 18 22 22 C 1.54265 * 108.55961 * 94.14791 * 21 20 19 23 23 C 1.45534 * 112.36619 * 280.09767 * 22 21 20 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.09001 * 109.52078 * 297.35521 * 13 12 11 32 32 H 1.09008 * 109.51709 * 57.46791 * 13 12 11 33 33 H 1.09007 * 109.51309 * 176.97063 * 14 13 12 34 34 H 1.08999 * 109.51332 * 297.12045 * 14 13 12 35 35 H 1.08998 * 109.49711 * 302.31546 * 17 12 11 36 36 H 1.08998 * 109.49797 * 62.41690 * 17 12 11 37 37 H 1.09004 * 108.88617 * 95.80894 * 18 16 15 38 38 H 1.08993 * 108.89171 * 214.28246 * 18 16 15 39 39 H 1.08999 * 108.81917 * 197.45081 * 19 18 16 40 40 H 1.08997 * 108.72955 * 79.09822 * 19 18 16 41 41 H 1.08999 * 108.86634 * 197.48802 * 20 19 18 42 42 H 1.08994 * 108.87036 * 79.06219 * 20 19 18 43 43 H 1.08996 * 109.62268 * 334.42845 * 21 20 19 44 44 H 1.08995 * 109.62272 * 213.87320 * 21 20 19 45 45 H 1.08998 * 108.90488 * 159.35261 * 22 21 20 46 46 H 1.08998 * 108.82434 * 40.78780 * 22 21 20 47 47 H 1.09002 * 108.89650 * 301.16064 * 23 22 21 48 48 H 1.08999 * 108.89580 * 182.66724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.2009 -6.1413 1.2563 14 6 4.1348 -7.3545 1.2393 15 8 4.9841 -7.2787 0.0913 16 6 4.2742 -7.2366 -1.1497 17 6 3.3372 -6.0260 -1.1563 18 6 3.5030 -8.5102 -1.3671 19 6 4.1104 -9.7030 -0.6041 20 6 5.6494 -9.7342 -0.6725 21 6 6.1726 -9.3977 -2.0425 22 6 6.4873 -7.8882 -2.0908 23 6 5.2945 -7.0801 -2.2958 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.8540 -5.0446 0.8914 30 1 0.8534 -5.0452 -0.8885 31 1 3.7903 -5.2293 1.3507 32 1 2.5148 -6.2205 2.0997 33 1 4.7440 -7.3578 2.1433 34 1 3.5432 -8.2689 1.1949 35 1 2.7507 -6.0249 -2.0750 36 1 3.9255 -5.1103 -1.0984 37 1 2.4764 -8.3626 -1.0317 38 1 3.4945 -8.7401 -2.4325 39 1 3.7207 -10.6277 -1.0296 40 1 3.8061 -9.6417 0.4407 41 1 5.9942 -10.7313 -0.3986 42 1 6.0487 -9.0162 0.0437 43 1 5.4184 -9.6384 -2.7917 44 1 7.0811 -9.9675 -2.2375 45 1 7.1863 -7.6991 -2.9055 46 1 6.9544 -7.5961 -1.1503 47 1 4.8223 -7.3787 -3.2318 48 1 5.5861 -6.0324 -2.3681 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119553646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:06 Heat of formation + Delta-G solvation = -60.144360 kcal Electronic energy + Delta-G solvation = -23865.577425 eV Core-core repulsion = 20726.561166 eV Total energy + Delta-G solvation = -3139.016259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77887 -37.54020 -35.64515 -33.43837 -32.93230 -32.12189 -31.15497 -28.86647 -27.10354 -25.06988 -24.69660 -23.79163 -22.72599 -21.13065 -20.21174 -19.80337 -18.84204 -16.64940 -16.19571 -15.74978 -15.59334 -15.27479 -14.79954 -14.59843 -14.31265 -14.08885 -13.81960 -13.58813 -13.17541 -13.02900 -12.84184 -12.28250 -12.16143 -12.03784 -11.89290 -11.43039 -11.30052 -11.14782 -10.97057 -10.86559 -10.79188 -10.63217 -10.58336 -10.55012 -10.44635 -10.23348 -9.95134 -9.62426 -9.43061 -9.20491 -9.17362 -8.36064 -7.89732 -6.00928 -4.03598 3.30584 3.36800 3.40405 3.81425 4.11390 4.44951 4.64488 4.65953 4.77191 5.01174 5.05912 5.08164 5.17379 5.26726 5.32826 5.34495 5.38105 5.39439 5.49906 5.65982 5.67857 5.73601 5.79929 5.87236 5.90487 5.93249 6.02269 6.05463 6.08650 6.15311 6.17779 6.24434 6.28410 6.31327 6.34224 6.37551 6.55354 6.57877 6.76213 7.03001 7.24930 7.35703 7.36779 7.65024 7.79528 7.98377 8.41853 9.03268 9.60612 11.10125 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029998 B = 0.003595 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.185674 B = 7786.096647 C = 8150.999618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.144 4.144 11 C 0.052 3.948 12 N -0.534 5.534 13 C 0.014 3.986 14 C 0.056 3.944 15 O -0.365 6.365 16 C 0.131 3.869 17 C 0.028 3.972 18 C -0.137 4.137 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.105 4.105 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -20.439 -1.971 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.183 4.183 11 C -0.075 4.075 12 N -0.257 5.257 13 C -0.115 4.115 14 C -0.021 4.021 15 O -0.284 6.284 16 C 0.091 3.909 17 C -0.100 4.100 18 C -0.174 4.174 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.143 4.143 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.576 -20.766 -1.991 22.954 hybrid contribution 0.462 1.900 0.051 1.957 sum 10.039 -18.866 -1.940 21.458 Atomic orbital electron populations 1.69960 1.06035 1.26588 1.50902 1.25022 0.94844 0.99227 0.95330 0.86614 0.79870 0.83531 0.78123 1.20644 1.21172 1.19914 1.21253 0.92925 0.91185 1.50523 0.92926 1.19012 0.93833 0.91254 0.97130 1.22216 0.99966 0.95844 1.00263 1.22340 0.94427 0.88335 1.02378 1.62530 1.17019 1.44508 1.01678 1.22777 0.96785 0.98512 0.93387 1.22801 0.93035 0.97480 0.88777 1.88001 1.32593 1.94415 1.13408 1.21178 0.91239 0.93725 0.84744 1.22779 0.95038 0.97287 0.94907 1.21828 1.00818 0.94014 1.00774 1.21845 0.95513 0.96937 1.00299 1.21444 0.95389 1.00987 0.98169 1.21292 1.00163 0.95887 0.97736 1.20338 0.97557 0.94789 1.02313 1.20540 0.96269 1.00957 0.96524 0.92998 0.96642 0.96660 0.93254 0.93428 0.91074 0.91012 0.93399 0.90175 0.89252 0.91814 0.90170 0.93021 0.90298 0.91842 0.93105 0.92047 0.93675 0.89824 0.92244 0.92598 0.92851 0.91046 0.91325 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.14 -2.99 4.44 -26.73 -0.12 -3.10 16 11 C 0.05 0.90 5.38 -3.83 -0.02 0.88 16 12 N -0.53 -7.88 4.24 -234.30 -0.99 -8.88 16 13 C 0.01 0.19 5.32 -3.69 -0.02 0.17 16 14 C 0.06 0.65 6.39 37.22 0.24 0.89 16 15 O -0.37 -4.58 6.13 -35.23 -0.22 -4.79 16 16 C 0.13 1.56 0.62 -91.20 -0.06 1.50 16 17 C 0.03 0.40 3.64 -3.72 -0.01 0.39 16 18 C -0.14 -1.48 4.20 -27.44 -0.12 -1.60 16 19 C -0.11 -1.06 5.18 -25.61 -0.13 -1.20 16 20 C -0.12 -1.17 5.28 -27.43 -0.14 -1.32 16 21 C -0.11 -1.03 5.61 -27.33 -0.15 -1.19 16 22 C -0.11 -1.12 5.18 -29.59 -0.15 -1.27 16 23 C -0.11 -1.14 4.53 -29.61 -0.13 -1.28 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 1.03 6.42 -51.93 -0.33 0.70 16 28 H 0.05 1.00 6.61 -51.93 -0.34 0.66 16 29 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.75 6.60 -51.93 -0.34 0.41 16 32 H 0.08 1.04 8.12 -51.92 -0.42 0.62 16 33 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.06 0.70 5.01 -51.93 -0.26 0.44 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.83 6.25 -51.93 -0.32 0.51 16 37 H 0.08 0.96 7.23 -51.93 -0.38 0.58 16 38 H 0.06 0.64 6.63 -51.93 -0.34 0.30 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.61 5.57 -51.93 -0.29 0.32 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.91 5.32 -51.93 -0.28 0.63 16 43 H 0.06 0.54 6.98 -51.93 -0.36 0.17 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 47 H 0.07 0.67 7.47 -51.93 -0.39 0.29 16 48 H 0.06 0.75 7.83 -51.93 -0.41 0.35 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -29.76 340.04 -10.33 -40.09 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.58 Total: -1.66 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.37 Total: -20.35 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.26 Total: -35.30 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.22 Total: -4.79 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.76 -10.33 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119553646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.059 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds