Wall clock time and date at job start Tue Mar 31 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47097 * 2 1 4 4 C 1.52996 * 109.46827 * 305.66095 * 3 2 1 5 5 C 1.53005 * 109.47070 * 294.50593 * 4 3 2 6 6 C 1.52997 * 109.46862 * 65.65759 * 3 2 1 7 7 N 1.46503 * 109.46950 * 65.00387 * 6 3 2 8 8 C 1.46500 * 120.00261 * 89.99805 * 7 6 3 9 9 C 1.50705 * 109.46873 * 89.99745 * 8 7 6 10 10 H 1.07996 * 120.00234 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99633 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99695 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00123 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.47269 * 270.00598 * 13 11 9 15 15 H 1.48506 * 109.46789 * 30.00329 * 13 11 9 16 16 H 1.48502 * 109.47012 * 149.99986 * 13 11 9 17 17 C 1.34776 * 119.99787 * 269.99428 * 7 6 3 18 18 O 1.21283 * 119.99943 * 0.02562 * 17 7 6 19 19 C 1.50696 * 120.00117 * 180.02562 * 17 7 6 20 20 H 1.09004 * 115.54788 * 325.72388 * 19 17 7 21 21 C 1.53003 * 117.50247 * 111.39135 * 19 17 7 22 22 C 1.53003 * 60.00050 * 107.49208 * 21 19 17 23 23 C 1.52996 * 117.49894 * 252.51575 * 22 21 19 24 24 C 1.52994 * 117.49769 * 107.49174 * 22 21 19 25 25 H 1.09003 * 109.46880 * 186.77919 * 1 2 3 26 26 H 1.08997 * 109.47315 * 306.77615 * 1 2 3 27 27 H 1.08997 * 109.47295 * 66.78040 * 1 2 3 28 28 H 1.09001 * 109.47558 * 239.99953 * 2 1 3 29 29 H 1.08999 * 109.47418 * 119.99722 * 2 1 3 30 30 H 1.08999 * 109.46886 * 185.65718 * 3 2 1 31 31 H 1.08997 * 109.47811 * 54.50950 * 4 3 2 32 32 H 1.09000 * 109.47190 * 174.50861 * 4 3 2 33 33 H 1.09001 * 109.46768 * 55.60768 * 5 4 3 34 34 H 1.08998 * 109.46939 * 175.60145 * 5 4 3 35 35 H 1.08996 * 109.47668 * 295.60358 * 5 4 3 36 36 H 1.08995 * 109.47522 * 304.99819 * 6 3 2 37 37 H 1.09002 * 109.46923 * 184.99847 * 6 3 2 38 38 H 1.09002 * 109.46753 * 330.00045 * 8 7 6 39 39 H 1.08994 * 109.47276 * 209.99855 * 8 7 6 40 40 H 0.97003 * 119.99594 * 179.97438 * 12 11 9 41 41 H 1.08998 * 117.50100 * 214.98355 * 21 19 17 42 42 H 1.09004 * 117.49123 * 359.97438 * 21 19 17 43 43 H 1.09000 * 109.47212 * 128.62160 * 23 22 21 44 44 H 1.09003 * 109.46962 * 248.62416 * 23 22 21 45 45 H 1.09004 * 109.47497 * 8.61600 * 23 22 21 46 46 H 1.09005 * 109.47132 * 351.37713 * 24 22 21 47 47 H 1.09001 * 109.47468 * 111.37751 * 24 22 21 48 48 H 1.08999 * 109.47401 * 231.38101 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4171 2.2037 -1.1720 5 6 1.9173 1.6087 -2.4899 6 6 1.6494 2.1215 1.3143 7 7 2.3411 1.4660 2.4270 8 6 3.6577 1.9448 2.8551 9 6 3.4873 3.0026 3.9149 10 1 2.4973 3.2898 4.2370 11 6 4.5954 3.6045 4.4726 12 7 4.4467 4.5272 5.3978 13 14 6.3078 3.1082 3.9150 14 1 6.7984 1.9895 4.7592 15 1 6.2596 2.6733 2.4959 16 1 7.2265 4.2675 4.0465 17 6 1.7660 0.4224 3.0568 18 8 0.6761 0.0257 2.7020 19 6 2.4771 -0.2517 4.2017 20 1 3.5634 -0.2936 4.1211 21 6 1.8784 -0.0877 5.6001 22 6 1.7723 -1.4309 4.8752 23 6 0.3993 -1.8354 4.3347 24 6 2.6460 -2.5791 5.3841 25 1 -0.3633 -1.0205 0.1213 26 1 -0.3634 0.6152 0.8231 27 1 -0.3634 0.4051 -0.9444 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1253 1.4442 -0.1013 31 1 0.3315 2.1194 -1.1242 32 1 1.7027 3.2541 -1.1160 33 1 1.7005 0.5407 -2.5118 34 1 1.4145 2.0987 -3.3237 35 1 2.9931 1.7629 -2.5731 36 1 0.5720 2.0415 1.4584 37 1 1.9341 3.1731 1.2785 38 1 4.1858 2.3682 2.0007 39 1 4.2325 1.1126 3.2615 40 1 5.2263 4.9504 5.7904 41 1 2.5706 -0.0220 6.4395 42 1 0.9703 0.5082 5.6919 43 1 0.4901 -2.1154 3.2852 44 1 0.0195 -2.6829 4.9054 45 1 -0.2899 -0.9962 4.4286 46 1 3.3474 -2.2001 6.1274 47 1 2.0143 -3.3433 5.8370 48 1 3.1988 -3.0121 4.5504 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121936499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:25 Heat of formation + Delta-G solvation = -31.900108 kcal Electronic energy + Delta-G solvation = -24127.116600 eV Core-core repulsion = 20989.325103 eV Total energy + Delta-G solvation = -3137.791497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.91105 -37.80293 -36.06207 -34.73877 -32.42413 -30.85529 -29.37215 -28.59180 -27.28951 -27.07012 -24.67472 -23.33677 -22.68002 -21.95262 -19.29175 -18.55302 -17.70671 -17.02901 -16.61686 -15.48849 -15.20698 -14.90433 -14.48975 -14.00984 -13.62043 -13.44729 -13.38243 -13.12336 -12.74111 -12.70562 -12.51396 -12.17382 -12.12039 -11.99242 -11.70987 -11.59108 -11.45459 -11.35896 -11.16514 -10.94599 -10.89921 -10.84231 -10.60567 -10.34270 -10.07694 -10.04771 -10.00981 -9.65878 -9.55857 -9.30163 -8.73972 -8.64513 -7.63870 -6.19013 -4.19083 3.17227 3.25582 3.26473 3.27746 3.80436 4.27958 4.32291 5.02962 5.10835 5.11662 5.12590 5.16452 5.23175 5.38744 5.44397 5.47778 5.61855 5.67252 5.68645 5.90541 5.94586 5.96970 5.97770 6.03929 6.10522 6.12644 6.13620 6.15362 6.28609 6.31258 6.34571 6.36927 6.39951 6.46686 6.51646 6.53233 6.57953 6.63793 6.73947 6.75524 6.88808 6.93445 7.42846 7.48889 8.19829 8.46514 8.86935 9.04887 9.41163 10.93962 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.008175 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.804767 B = 3424.392703 C = 5408.947308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.104 4.104 4 C -0.119 4.119 5 C -0.150 4.150 6 C 0.123 3.877 7 N -0.586 5.586 8 C 0.210 3.790 9 C -0.532 4.532 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.893 5.893 13 Si 0.869 3.131 14 H -0.274 1.274 15 H -0.265 1.265 16 H -0.284 1.284 17 C 0.548 3.452 18 O -0.556 6.556 19 C -0.167 4.167 20 H 0.117 0.883 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.093 4.093 24 C -0.113 4.113 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.265 0.735 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -9.864 -7.617 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.123 4.123 4 C -0.157 4.157 5 C -0.207 4.207 6 C 0.000 4.000 7 N -0.315 5.315 8 C 0.089 3.911 9 C -0.571 4.571 10 H 0.095 0.905 11 C -0.127 4.127 12 N -0.531 5.531 13 Si 0.695 3.305 14 H -0.200 1.200 15 H -0.189 1.189 16 H -0.209 1.209 17 C 0.337 3.663 18 O -0.436 6.436 19 C -0.188 4.188 20 H 0.135 0.865 21 C -0.168 4.168 22 C -0.114 4.114 23 C -0.150 4.150 24 C -0.170 4.170 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.093 -9.910 -7.687 13.193 hybrid contribution 1.401 0.164 -0.117 1.416 sum -2.691 -9.746 -7.804 12.773 Atomic orbital electron populations 1.21761 0.95757 1.01337 1.00867 1.21451 0.96562 0.95773 1.00871 1.21597 1.00126 0.95852 0.94741 1.21554 1.00851 0.99295 0.94043 1.21779 1.00843 1.01067 0.97016 1.21420 0.97796 0.96209 0.84583 1.47813 1.20804 1.30790 1.32058 1.19782 0.80164 0.95265 0.95922 1.21362 0.95399 1.20013 1.20276 0.90472 1.24859 0.98770 0.94578 0.94537 1.69893 1.30386 1.26013 1.26773 0.86965 0.84982 0.78671 0.79839 1.19962 1.18943 1.20941 1.19436 0.85070 0.79702 0.82136 1.90591 1.21093 1.65194 1.66763 1.22248 0.99802 1.02446 0.94313 0.86548 1.23014 1.02462 0.98056 0.93307 1.21595 0.97703 0.89536 1.02559 1.21259 0.93259 1.00202 1.00317 1.21345 0.98616 0.96591 1.00418 0.93995 0.90873 0.94236 0.93557 0.91736 0.91548 0.91526 0.92136 0.92610 0.93274 0.93067 0.90458 0.90653 0.95193 0.95410 0.92482 0.88395 0.88739 0.91775 0.94320 0.91812 0.92461 0.92251 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.14 37.16 0.30 -1.75 16 2 C -0.11 -1.65 4.81 -26.73 -0.13 -1.78 16 3 C -0.10 -1.57 2.37 -90.62 -0.21 -1.78 16 4 C -0.12 -1.52 5.07 -26.73 -0.14 -1.66 16 5 C -0.15 -1.68 9.77 37.16 0.36 -1.32 16 6 C 0.12 2.20 4.90 -4.04 -0.02 2.18 16 7 N -0.59 -11.75 2.34 -175.06 -0.41 -12.16 16 8 C 0.21 4.66 4.06 -5.19 -0.02 4.63 16 9 C -0.53 -14.02 9.94 -34.44 -0.34 -14.36 16 10 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 13 Si 0.87 19.96 27.47 -169.99 -4.67 15.29 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.55 10.74 5.98 -10.99 -0.07 10.68 16 18 O -0.56 -10.91 8.88 5.55 0.05 -10.86 16 19 C -0.17 -3.05 5.01 -91.77 -0.46 -3.51 16 20 H 0.12 2.14 6.44 -51.93 -0.33 1.80 16 21 C -0.13 -2.26 9.52 -26.73 -0.25 -2.52 16 22 C -0.11 -1.76 2.70 -154.51 -0.42 -2.18 16 23 C -0.09 -1.43 8.09 37.16 0.30 -1.13 16 24 C -0.11 -1.44 9.85 37.15 0.37 -1.07 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.21 4.86 -51.93 -0.25 0.96 16 27 H 0.04 0.51 6.63 -51.93 -0.34 0.16 16 28 H 0.05 0.64 6.76 -51.93 -0.35 0.29 16 29 H 0.06 1.13 5.57 -51.93 -0.29 0.84 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.83 6.18 -51.93 -0.32 0.51 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.62 6.51 -51.93 -0.34 0.29 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.40 5.66 -51.93 -0.29 1.11 16 37 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 39 H 0.03 0.61 5.42 -51.93 -0.28 0.32 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.10 1.61 8.05 -51.93 -0.42 1.19 16 42 H 0.09 1.72 8.05 -51.93 -0.42 1.30 16 43 H 0.06 1.04 7.26 -51.93 -0.38 0.67 16 44 H 0.04 0.51 7.92 -51.93 -0.41 0.09 16 45 H 0.06 1.07 7.02 -51.93 -0.36 0.71 16 46 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 47 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -27.86 357.66 -8.22 -36.08 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.53 Total: 5.12 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.82 Total: -13.63 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.36 Total: -37.40 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.05 Total: -10.86 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.86 -8.22 -36.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121936499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.184 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds